Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Forward (+)

953259 .. 954631

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g01340.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGAGGAAGCCTCGGATTTTACTTGCTGCTACTGGAAGTGTAGCTGCCCTAAAGTTTGTCAGCCTCTGCCAGATTTTTTCTCGATGGGCGGAAGTAAAAGCAGTTGCCACAAGAGCATCTTTGTGTTTCATTGATCGAGCATCGCTTCCAAAGGATGTGATTATTTACACTGATGGGGATGAGTGGTCCAGTTGGAGGAAAATTGGAGATAGCGTGCTTCACATCGAGCTTAAAAAATGGGCTGATATCATGGTTATTTCTCCATTGTCAGCAAACACACTGGGCAAGATTGCTGAGAGATTGTGTGACAATCTACTCACCTGTCTTGTAGATGCATGGGACTGGAAAAAGCCTTTGTTTGTTGCGCCGGCCATGAACGCGTTGATGTGGAGCAATCCCTTCACCGAGCTACATGTGATGTCTATTGATAACCTAGGAATTTCACTCATCCCACCTATCCGTGGTGAAATGGCTGAGCCTTCTACAATCAACTCCACTGTAAGACTCTTTTACGCTCACAAATTCAACAGGGTTGCTGCATTGGATGCACTACAAGACAATTCTCTGAGGAAGCCACGGATTCTACTCGCTGCTAGCGGGAGTGTAGCTGCCATAAAGTTTGCTCACCTCTGCCATAGTTTCTCTGGATGGTCAGAAGTAAGAGCAATTGCCACAAGTGCATCTTTTCATTTCATCGGTAGAGCATCACTCCCCAAGGATGTAATACTCTACACCGACGAAGAAGAATTGTCCAGATGGAACACAGAATATGATAGTGCGTGTCCCATTTATCTTCGCCATTGGGCTGATATAATGGTTATTGCCCCATTGTCAGCAAACACACTAGCCAAGATTGCCCGGGGATTGTGTGACAATCTACTCTCCTCTGTTGTATATGCATGGGATCACAACAAGCCTTTATATGTTGCACCGGCCATGAACGCCATGATGTGGAACAATCCTTTCACAGAGAAACATTTGAAGACGATTGGGGATGAACTCGGAGTTAAACTCATCCTTCCTCGTACAAAGAATGGTGCAATGGCTGAAATTGATGTGATTGACGGTTTTGTAAAAGACCGTTTACTAGACAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

367

Amino Acids

40.85

Weight (kDa)

8.39

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	951
AccII	CGCG	1 cut(s)	380
AciI	CCGC	2 cut(s)	89, 597
AclWI	GGATC	1 cut(s)	912
AcoI	YGGCCR	2 cut(s)	369, 933
AcsI	RAATTY	3 cut(s)	438, 521, 1095
AfaI	GTAC	1 cut(s)	1027
AfiI	CCNNNNNNNGG	3 cut(s)	195, 461, 951
AflIII	ACRYGT	2 cut(s)	378, 412
AgsI	TTSAA	2 cut(s)	526, 982
AluBI	AGCT	4 cut(s)	44, 229, 409, 608
AluI	AGCT	4 cut(s)	44, 229, 409, 608
AlwI	GGATC	1 cut(s)	912
AlwNI	CAGNNNCTG	1 cut(s)	66
Ama87I	CYCGRG	1 cut(s)	858
AoxI	GGCC	2 cut(s)	369, 933
ApeKI	GCWGC	5 cut(s)	26, 44, 536, 590, 608
ApoI	RAATTY	3 cut(s)	438, 521, 1095
AspA2I	CCTAGG	1 cut(s)	433
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	186
AsuC2I	CCSGG	2 cut(s)	859, 860
AsuHPI	GGTGA	4 cut(s)	310, 394, 476, 617
AsuNHI	GCTAGC	1 cut(s)	593
AvaI	CYCGRG	1 cut(s)	858
AvaII	GGWCC	1 cut(s)	186
AvrII	CCTAGG	1 cut(s)	433
BbsI	GAAGAC	1 cut(s)	989
BbvI	GCAGC	5 cut(s)	13, 31, 523, 577, 595
BccI	CCATC	4 cut(s)	78, 167, 642, 750
BcnI	CCSGG	2 cut(s)	859, 860
BfaI	CTAG	4 cut(s)	434, 594, 845, 1088
BisI	GCNGC	5 cut(s)	27, 45, 537, 591, 609
BlnI	CCTAGG	1 cut(s)	433
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	5 cut(s)	28, 46, 538, 592, 610
Bme1390I	CCNGG	2 cut(s)	859, 860
Bme18I	GGWCC	1 cut(s)	186
BmeT110I	CYCGRG	1 cut(s)	858
BmgT120I	GGNCC	1 cut(s)	186
BmrFI	CCNGG	2 cut(s)	859, 860
BmrI	ACTGGG	1 cut(s)	290
BmsI	GCATC	6 cut(s)	125, 149, 322, 535, 689, 713
BmtI	GCTAGC	1 cut(s)	597
BmuI	ACTGGG	1 cut(s)	290
BpiI	GAAGAC	1 cut(s)	989
BplI	GAGNNNNNCTC	5 cut(s)	27, 693, 725, 996, 1028
Bpu1102I	GCTNAGC	1 cut(s)	474
BpuMI	CCSGG	2 cut(s)	859, 860
BsaJI	CCNNGG	7 cut(s)	11, 433, 460, 575, 714, 858, 859
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 461, 951
Bse118I	RCCGGY	2 cut(s)	367, 931
Bse1I	ACTGG	4 cut(s)	37, 189, 285, 347
Bse3DI	GCAATG	1 cut(s)	1047
BseDI	CCNNGG	7 cut(s)	11, 433, 460, 575, 714, 858, 859
BseGI	GGATG	8 cut(s)	160, 184, 447, 550, 653, 724, 1000, 1014
BseLI	CCNNNNNNNGG	3 cut(s)	195, 461, 951
BseMI	GCAATG	1 cut(s)	1047
BseMII	CTCAG	3 cut(s)	285, 465, 557
BseNI	ACTGG	4 cut(s)	37, 189, 285, 347
BseRI	GAGGAG	1 cut(s)	874
BseXI	GCAGC	5 cut(s)	13, 31, 523, 577, 595
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	2 cut(s)	371, 935
BsiHKCI	CYCGRG	1 cut(s)	858
BsiSI	CCGG	3 cut(s)	368, 859, 932
BslFI	GGGAC	2 cut(s)	353, 768
BslI	CCNNNNNNNGG	3 cut(s)	195, 461, 951
BsmFI	GGGAC	2 cut(s)	353, 768
BsnI	GGCC	2 cut(s)	371, 935
BsoBI	CYCGRG	1 cut(s)	858
Bsp143I	GATC	2 cut(s)	133, 904
Bsp1720I	GCTNAGC	1 cut(s)	474
BspACI	CCGC	2 cut(s)	89, 597
BspANI	GGCC	2 cut(s)	371, 935
BspCNI	CTCAG	3 cut(s)	286, 466, 558
BspFNI	CGCG	1 cut(s)	380
BspOI	GCTAGC	1 cut(s)	597
BspPI	GGATC	1 cut(s)	912
BsrDI	GCAATG	1 cut(s)	1047
BsrFI	RCCGGY	2 cut(s)	367, 931
BsrI	ACTGG	4 cut(s)	37, 189, 285, 347
BssAI	RCCGGY	2 cut(s)	367, 931
BssECI	CCNNGG	7 cut(s)	11, 433, 460, 575, 714, 858, 859
BssMI	GATC	2 cut(s)	133, 904
BssT1I	CCWWGG	2 cut(s)	433, 714
Bst4CI	ACNGT	3 cut(s)	499, 1067, 1082
BstAPI	GCANNNNNTGC	1 cut(s)	545
BstC8I	GCNNGC	3 cut(s)	215, 369, 595
BstDEI	CTNAG	3 cut(s)	294, 474, 566
BstDSI	CCRYGG	2 cut(s)	460, 575
BstF5I	GGATG	8 cut(s)	160, 184, 447, 550, 653, 724, 1000, 1014
BstFNI	CGCG	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	367
BstKTI	GATC	2 cut(s)	136, 907
BstMBI	GATC	2 cut(s)	133, 904
BstMWI	GCNNNNNNNGC	6 cut(s)	113, 377, 545, 677, 854, 941
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	857, 858
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	5 cut(s)	13, 31, 523, 577, 595
BstV2I	GAAGAC	1 cut(s)	989
BsuRI	GGCC	2 cut(s)	371, 935
BtgI	CCRYGG	2 cut(s)	460, 575
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	8 cut(s)	160, 184, 447, 550, 653, 724, 1000, 1014
BtsIMutI	CAGTG	3 cut(s)	168, 278, 495
Cac8I	GCNNGC	3 cut(s)	215, 369, 595
CaiI	CAGNNNCTG	1 cut(s)	66
CfoI	GCGC	1 cut(s)	367
Cfr10I	RCCGGY	2 cut(s)	367, 931
Cfr13I	GGNCC	1 cut(s)	186
Cfr9I	CCCGGG	1 cut(s)	858
Csp6I	GTAC	1 cut(s)	1026
CviAII	CATG	7 cut(s)	250, 336, 373, 413, 900, 937, 946
CviQI	GTAC	1 cut(s)	1026
DdeI	CTNAG	3 cut(s)	294, 474, 566
DpnI	GATC	2 cut(s)	135, 906
DpnII	GATC	2 cut(s)	133, 904
EaeI	YGGCCR	2 cut(s)	369, 933
EciI	GGCGGA	1 cut(s)	104
Eco130I	CCWWGG	2 cut(s)	433, 714
Eco32I	GATATC	1 cut(s)	247
Eco47I	GGWCC	1 cut(s)	186
Eco88I	CYCGRG	1 cut(s)	858
EcoRV	GATATC	1 cut(s)	247
EcoT14I	CCWWGG	2 cut(s)	433, 714
EcoT22I	ATGCAT	2 cut(s)	337, 901
ErhI	CCWWGG	2 cut(s)	433, 714
FaeI	CATG	7 cut(s)	253, 339, 376, 416, 903, 940, 949
FalI	AAGNNNNNCTT	4 cut(s)	103, 135, 667, 699
FaqI	GGGAC	2 cut(s)	353, 768
FatI	CATG	7 cut(s)	249, 335, 372, 412, 899, 936, 945
FauI	CCCGC	1 cut(s)	590
Fnu4HI	GCNGC	5 cut(s)	27, 45, 537, 591, 609
FokI	GGATG	8 cut(s)	167, 191, 434, 557, 660, 731, 1001, 1007
Fsp4HI	GCNGC	5 cut(s)	27, 45, 537, 591, 609
FspBI	CTAG	4 cut(s)	434, 594, 845, 1088
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	5 cut(s)	27, 45, 537, 591, 609
HaeIII	GGCC	2 cut(s)	371, 935
HapII	CCGG	3 cut(s)	368, 859, 932
HhaI	GCGC	1 cut(s)	367
Hin1II	CATG	7 cut(s)	253, 339, 376, 416, 903, 940, 949
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HinfI	GANTC	2 cut(s)	504, 580
HpaII	CCGG	3 cut(s)	368, 859, 932
HphI	GGTGA	4 cut(s)	310, 394, 476, 617
Hpy166II	GTNNAC	1 cut(s)	1085
Hpy188I	TCNGA	4 cut(s)	15, 567, 655, 1004
Hpy188III	TCNNGA	3 cut(s)	81, 645, 753
Hpy8I	GTNNAC	1 cut(s)	1085
Hpy99I	CGWCG	1 cut(s)	740
HpyAV	CCTTC	3 cut(s)	409, 489, 1028
HpyCH4III	ACNGT	3 cut(s)	499, 1067, 1082
HpyCH4V	TGCA	7 cut(s)	335, 539, 548, 680, 899, 929, 1040
HpyF10VI	GCNNNNNNNGC	6 cut(s)	113, 377, 545, 677, 854, 941
HpyF3I	CTNAG	3 cut(s)	294, 474, 566
Hsp92II	CATG	7 cut(s)	253, 339, 376, 416, 903, 940, 949
HspAI	GCGC	1 cut(s)	365
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
Kzo9I	GATC	2 cut(s)	133, 904
LmnI	GCTCC	1 cut(s)	390
Lsp1109I	GCAGC	5 cut(s)	13, 31, 523, 577, 595
LweI	GCATC	6 cut(s)	125, 149, 322, 535, 689, 713
MaeI	CTAG	4 cut(s)	434, 594, 845, 1088
MaeIII	GTNAC	2 cut(s)	305, 869
MalI	GATC	2 cut(s)	135, 906
MboI	GATC	2 cut(s)	133, 904
MboII	GAAGA	4 cut(s)	752, 755, 785, 994
MfeI	CAATTG	1 cut(s)	666
MluCI	AATT	8 cut(s)	201, 438, 521, 559, 666, 746, 1050, 1095
MluI	ACGCGT	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	498
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	7 cut(s)	21, 74, 189, 561, 638, 895, 1032
Mph1103I	ATGCAT	2 cut(s)	337, 901
MroNI	GCCGGC	1 cut(s)	367
MseI	TTAA	2 cut(s)	231, 1008
MslI	CAYNNNNRTG	1 cut(s)	121
MspI	CCGG	3 cut(s)	368, 859, 932
MspR9I	CCNGG	2 cut(s)	859, 860
MunI	CAATTG	1 cut(s)	666
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	6 cut(s)	113, 377, 545, 677, 854, 941
NaeI	GCCGGC	1 cut(s)	369
NciI	CCSGG	2 cut(s)	859, 860
NdeII	GATC	2 cut(s)	133, 904
NgoMIV	GCCGGC	1 cut(s)	367
NheI	GCTAGC	1 cut(s)	593
NlaIII	CATG	7 cut(s)	253, 339, 376, 416, 903, 940, 949
NmuCI	GTSAC	2 cut(s)	305, 869
NsiI	ATGCAT	2 cut(s)	337, 901
NspI	RCATGY	1 cut(s)	416
PciI	ACATGT	1 cut(s)	412
PdiI	GCCGGC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	580
PflMI	CCANNNNNTGG	1 cut(s)	951
PkrI	GCNGC	5 cut(s)	28, 46, 538, 592, 610
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
PscI	ACATGT	1 cut(s)	412
PspPI	GGNCC	1 cut(s)	186
PstNI	CAGNNNCTG	1 cut(s)	66
RsaI	GTAC	1 cut(s)	1027
RsaNI	GTAC	1 cut(s)	1026
RseI	CAYNNNNRTG	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	231, 1008
SatI	GCNGC	5 cut(s)	27, 45, 537, 591, 609
Sau3AI	GATC	2 cut(s)	133, 904
Sau96I	GGNCC	1 cut(s)	186
SchI	GAGTC	1 cut(s)	498
ScrFI	CCNGG	2 cut(s)	859, 860
SetI	ASST	8 cut(s)	46, 231, 323, 411, 435, 457, 610, 630
SfaNI	GCATC	6 cut(s)	125, 149, 322, 535, 689, 713
SinI	GGWCC	1 cut(s)	186
SmaI	CCCGGG	1 cut(s)	860
SmiMI	CAYNNNNRTG	1 cut(s)	121
Sse9I	AATT	8 cut(s)	201, 438, 521, 559, 666, 746, 1050, 1095
SsiI	CCGC	2 cut(s)	89, 597
SspMI	CTAG	4 cut(s)	434, 594, 845, 1088
StyD4I	CCNGG	2 cut(s)	857, 858
StyI	CCWWGG	2 cut(s)	433, 714
TaaI	ACNGT	3 cut(s)	499, 1067, 1082
TaqI	TCGA	3 cut(s)	82, 136, 225
TasI	AATT	8 cut(s)	201, 438, 521, 559, 666, 746, 1050, 1095
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	2 cut(s)	231, 1008
Tru9I	TTAA	2 cut(s)	231, 1008
TscAI	CASTG	3 cut(s)	175, 285, 502
TseFI	GTSAC	2 cut(s)	305, 869
TseI	GCWGC	5 cut(s)	26, 44, 536, 590, 608
Tsp45I	GTSAC	2 cut(s)	305, 869
TspDTI	ATGAA	6 cut(s)	118, 389, 677, 682, 953, 1011
TspGWI	ACGGA	2 cut(s)	449, 592
TspMI	CCCGGG	1 cut(s)	858
TspRI	CASTG	3 cut(s)	175, 285, 502
Van91I	CCANNNNNTGG	1 cut(s)	951
VpaK11BI	GGWCC	1 cut(s)	186
XapI	RAATTY	3 cut(s)	438, 521, 1095
XceI	RCATGY	1 cut(s)	416
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XmaI	CCCGGG	1 cut(s)	858
XmaJI	CCTAGG	1 cut(s)	433
XspI	CTAG	4 cut(s)	434, 594, 845, 1088
Zsp2I	ATGCAT	2 cut(s)	337, 901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.