Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000449.1

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Reverse (-)

162151 .. 166631

Gene Structure 4481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000449.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atggccggaagcataacccctgttcacagaaaaccccggattgttctcggtgcttgcgggtgtgccgctgcactggattttccgagattgtgccgaacttttcttaattgggcagaagtaaaagctgtaggcacacccgacggtttcaaatacgttgaacacgtagcgatgcccgtgggggtaagtttactcatcaaggatgattggaaaagtttccatgaccctgtgcttcataggcatcttgctgcttgggctgatgcattagtcattgctccattgtcagcaaacactctaagcaagattgatgcaggtctttgtgacaaccttctcactgatattgtacgtgcatgggactgtggaaaaccgttatttgttgcgccggcaatgacctacatgacatggaaaaataccatcacaaagaagtctatagagtcaattcgacaacatggtatcaaagtgattggaccggcggaaagtggtggaatggctgaaatctattccattgttgataaggaccgccactttgatggcagtgatcgaggagccgccgctttgtatggccgtgacagagtcgcagtagactatgtccggcaacgtggaggttctacttgcgatttcagagcgttgggtttggccgtggaggcagacggcgtgcagcactgtcgtgtgatgtcgtttttagcggatggccgagatttgtctgatgttgacataaaagagagggaaaccgagtggttcaacacttcgtactttcaactgatatcgttgtcttcaagtgtcgctctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0042538 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

262

Amino Acids

28.73

Weight (kDa)

6.7

Isoelectric Point (pI)

18.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	299
AccI	GTMKAC	1 cut(s)	579
AciI	CCGC	7 cut(s)	57, 66, 470, 517, 546, 549, 683
AcoI	YGGCCR	4 cut(s)	3, 559, 633, 688
AfaI	GTAC	2 cut(s)	342, 749
AflIII	ACRYGT	1 cut(s)	160
AgsI	TTSAA	5 cut(s)	148, 158, 739, 755, 774
AleI	CACNNNNGTG	1 cut(s)	663
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
AoxI	GGCC	4 cut(s)	3, 559, 633, 688
ApeKI	GCWGC	3 cut(s)	68, 245, 655
ArsI	GACNNNNNNTTYG	2 cut(s)	506, 538
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	2 cut(s)	464, 514
AsuC2I	CCSGG	1 cut(s)	37
AvaII	GGWCC	2 cut(s)	464, 514
BbsI	GAAGAC	1 cut(s)	762
BbvI	GCAGC	3 cut(s)	55, 232, 667
BccI	CCATC	3 cut(s)	419, 521, 680
BceAI	ACGGC	3 cut(s)	546, 620, 664
BcgI	CGANNNNNNTGC	2 cut(s)	644, 678
BcnI	CCSGG	1 cut(s)	37
BfmI	CTRYAG	2 cut(s)	126, 426
BfuAI	ACCTGC	1 cut(s)	299
BglI	GCCNNNNNGGC	1 cut(s)	641
BisI	GCNGC	6 cut(s)	66, 69, 246, 546, 549, 656
BlsI	GCNGC	6 cut(s)	67, 70, 247, 547, 550, 657
Bme1390I	CCNGG	1 cut(s)	37
Bme18I	GGWCC	2 cut(s)	464, 514
BmgT120I	GGNCC	2 cut(s)	464, 514
BmiI	GGNNCC	1 cut(s)	544
BmrFI	CCNGG	1 cut(s)	37
BmsI	GCATC	4 cut(s)	159, 247, 247, 295
BpiI	GAAGAC	1 cut(s)	762
BpuMI	CCSGG	1 cut(s)	37
BsaAI	YACGTR	2 cut(s)	163, 344
BsaJI	CCNNGG	3 cut(s)	35, 174, 636
Bse118I	RCCGGY	2 cut(s)	379, 466
Bse1I	ACTGG	1 cut(s)	78
Bse3DI	GCAATG	2 cut(s)	267, 390
BseDI	CCNNGG	3 cut(s)	35, 174, 636
BseGI	GGATG	2 cut(s)	205, 691
BseMI	GCAATG	2 cut(s)	267, 390
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	555
BseXI	GCAGC	3 cut(s)	55, 232, 667
BsgI	GTGCAG	2 cut(s)	54, 674
BshFI	GGCC	4 cut(s)	5, 561, 635, 690
BsiSI	CCGG	5 cut(s)	6, 37, 380, 467, 589
BslFI	GGGAC	1 cut(s)	365
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	4 cut(s)	5, 561, 635, 690
Bsp143I	GATC	1 cut(s)	535
BspACI	CCGC	7 cut(s)	57, 66, 470, 517, 546, 549, 683
BspANI	GGCC	4 cut(s)	5, 561, 635, 690
BspLI	GGNNCC	1 cut(s)	544
BspMI	ACCTGC	1 cut(s)	299
BsrDI	GCAATG	2 cut(s)	267, 390
BsrFI	RCCGGY	2 cut(s)	379, 466
BsrI	ACTGG	1 cut(s)	78
BssAI	RCCGGY	2 cut(s)	379, 466
BssECI	CCNNGG	3 cut(s)	35, 174, 636
BssMI	GATC	1 cut(s)	535
Bst4CI	ACNGT	4 cut(s)	143, 356, 366, 662
BstBAI	YACGTR	2 cut(s)	163, 344
BstC8I	GCNNGC	3 cut(s)	55, 381, 653
BstDEI	CTNAG	1 cut(s)	293
BstDSI	CCRYGG	2 cut(s)	174, 636
BstF5I	GGATG	2 cut(s)	205, 691
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	1 cut(s)	538
BstMBI	GATC	1 cut(s)	535
BstMWI	GCNNNNNNNGC	3 cut(s)	235, 251, 641
BstSCI	CCNGG	1 cut(s)	35
BstSFI	CTRYAG	2 cut(s)	126, 426
BstV1I	GCAGC	3 cut(s)	55, 232, 667
BstV2I	GAAGAC	1 cut(s)	762
BstXI	CCANNNNNNTGG	1 cut(s)	527
BsuRI	GGCC	4 cut(s)	5, 561, 635, 690
BtgI	CCRYGG	2 cut(s)	174, 636
BtgZI	GCGATG	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	205, 691
BtsI	GCAGTG	1 cut(s)	538
BtsIMutI	CAGTG	4 cut(s)	71, 330, 538, 658
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	3 cut(s)	55, 381, 653
CfoI	GCGC	1 cut(s)	379
Cfr10I	RCCGGY	2 cut(s)	379, 466
Cfr13I	GGNCC	2 cut(s)	464, 514
Csp6I	GTAC	2 cut(s)	341, 748
CviAII	CATG	5 cut(s)	218, 348, 394, 399, 446
CviJI	RGCY	8 cut(s)	5, 125, 254, 488, 545, 561, 635, 690
CviKI_1	RGCY	8 cut(s)	5, 125, 254, 488, 545, 561, 635, 690
CviQI	GTAC	2 cut(s)	341, 748
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	1 cut(s)	537
DpnII	GATC	1 cut(s)	535
EaeI	YGGCCR	4 cut(s)	3, 559, 633, 688
EciI	GGCGGA	1 cut(s)	485
Eco32I	GATATC	1 cut(s)	762
Eco47I	GGWCC	2 cut(s)	464, 514
EcoRV	GATATC	1 cut(s)	762
EcoT22I	ATGCAT	1 cut(s)	262
FaeI	CATG	5 cut(s)	221, 351, 397, 402, 449
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	5 cut(s)	217, 347, 393, 398, 445
FauI	CCCGC	1 cut(s)	50
FblI	GTMKAC	1 cut(s)	579
Fnu4HI	GCNGC	6 cut(s)	66, 69, 246, 546, 549, 656
FokI	GGATG	2 cut(s)	212, 698
Fsp4HI	GCNGC	6 cut(s)	66, 69, 246, 546, 549, 656
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	6 cut(s)	66, 69, 246, 546, 549, 656
HaeIII	GGCC	4 cut(s)	5, 561, 635, 690
HapII	CCGG	5 cut(s)	6, 37, 380, 467, 589
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	5 cut(s)	221, 351, 397, 402, 449
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HinfI	GANTC	2 cut(s)	431, 570
HpaII	CCGG	5 cut(s)	6, 37, 380, 467, 589
Hpy166II	GTNNAC	4 cut(s)	25, 188, 580, 709
Hpy188I	TCNGA	3 cut(s)	84, 620, 703
Hpy8I	GTNNAC	4 cut(s)	25, 188, 580, 709
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	4 cut(s)	143, 356, 366, 662
HpyCH4IV	ACGT	4 cut(s)	153, 162, 343, 595
HpyCH4V	TGCA	5 cut(s)	71, 260, 308, 347, 655
HpyF10VI	GCNNNNNNNGC	3 cut(s)	235, 251, 641
HpyF3I	CTNAG	1 cut(s)	293
HpySE526I	ACGT	4 cut(s)	153, 162, 343, 595
Hsp92II	CATG	5 cut(s)	221, 351, 397, 402, 449
HspAI	GCGC	1 cut(s)	377
KroI	GCCGGC	1 cut(s)	379
KroNI	GCCGGC	1 cut(s)	381
Kzo9I	GATC	1 cut(s)	535
LmnI	GCTCC	2 cut(s)	277, 542
LpnPI	CCDG	9 cut(s)	19, 33, 50, 59, 237, 294, 393, 480, 602
Lsp1109I	GCAGC	3 cut(s)	55, 232, 667
LweI	GCATC	4 cut(s)	159, 247, 247, 295
MaeII	ACGT	4 cut(s)	153, 162, 343, 595
MaeIII	GTNAC	2 cut(s)	317, 563
MalI	GATC	1 cut(s)	537
MboI	GATC	1 cut(s)	535
MboII	GAAGA	1 cut(s)	762
MluCI	AATT	2 cut(s)	106, 435
MlyI	GAGTC	2 cut(s)	440, 579
MnlI	CCTC	4 cut(s)	533, 593, 634, 714
Mph1103I	ATGCAT	1 cut(s)	262
MroNI	GCCGGC	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	212
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	2 cut(s)	525, 663
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	5 cut(s)	6, 37, 380, 467, 589
MspR9I	CCNGG	1 cut(s)	37
MwoI	GCNNNNNNNGC	3 cut(s)	235, 251, 641
NaeI	GCCGGC	1 cut(s)	381
NciI	CCSGG	1 cut(s)	37
NdeII	GATC	1 cut(s)	535
NgoMIV	GCCGGC	1 cut(s)	379
NlaIII	CATG	5 cut(s)	221, 351, 397, 402, 449
NlaIV	GGNNCC	1 cut(s)	544
NmeAIII	GCCGAG	1 cut(s)	716
NmuCI	GTSAC	2 cut(s)	317, 563
NsiI	ATGCAT	1 cut(s)	262
OliI	CACNNNNGTG	1 cut(s)	663
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdiI	GCCGGC	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	212
PflFI	GACNNNGTC	2 cut(s)	569, 584
PkrI	GCNGC	6 cut(s)	67, 70, 247, 547, 550, 657
PleI	GAGTC	2 cut(s)	439, 578
PpsI	GAGTC	2 cut(s)	439, 578
Ppu21I	YACGTR	2 cut(s)	163, 344
PspN4I	GGNNCC	1 cut(s)	544
PspPI	GGNCC	2 cut(s)	464, 514
PsyI	GACNNNGTC	2 cut(s)	569, 584
RsaI	GTAC	2 cut(s)	342, 749
RsaNI	GTAC	2 cut(s)	341, 748
RseI	CAYNNNNRTG	2 cut(s)	525, 663
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	6 cut(s)	66, 69, 246, 546, 549, 656
Sau3AI	GATC	1 cut(s)	535
Sau96I	GGNCC	2 cut(s)	464, 514
SchI	GAGTC	2 cut(s)	440, 579
ScrFI	CCNGG	1 cut(s)	37
SetI	ASST	9 cut(s)	127, 156, 165, 313, 327, 346, 392, 598, 604
SfaNI	GCATC	4 cut(s)	159, 247, 247, 295
SfcI	CTRYAG	2 cut(s)	126, 426
SinI	GGWCC	2 cut(s)	464, 514
SmiMI	CAYNNNNRTG	2 cut(s)	525, 663
Sse9I	AATT	2 cut(s)	106, 435
SsiI	CCGC	7 cut(s)	57, 66, 470, 517, 546, 549, 683
StyD4I	CCNGG	1 cut(s)	35
TaaI	ACNGT	4 cut(s)	143, 356, 366, 662
TaiI	ACGT	4 cut(s)	156, 165, 346, 598
TaqI	TCGA	2 cut(s)	439, 538
TasI	AATT	2 cut(s)	106, 435
TauI	GCSGC	3 cut(s)	68, 548, 551
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	4 cut(s)	78, 337, 538, 665
TseFI	GTSAC	2 cut(s)	317, 563
TseI	GCWGC	3 cut(s)	68, 245, 655
Tsp45I	GTSAC	2 cut(s)	317, 563
TspDTI	ATGAA	1 cut(s)	221
TspRI	CASTG	4 cut(s)	78, 337, 538, 665
Tth111I	GACNNNGTC	2 cut(s)	569, 584
VpaK11BI	GGWCC	2 cut(s)	464, 514
XmiI	GTMKAC	1 cut(s)	579
XmnI	GAANNNNTTC	1 cut(s)	212
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.