Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Reverse (-)

18972184 .. 18973764

Gene Structure 1581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g14100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAATGATCACCTTCGTCAGTCCGGAGGACACTTTTGGGGCATGACGCGCTCTGAACCTGCGAGTCCAGAAATTGAGCAACAAGCCAATCCTGCACCAAGGAGGCCTCGGATTCTACTTGCTGCTAGCGGAAGTGTAGCTGCCATAAAGTTTGGCAACCTATGCCATAGTTTTTCAGAATGGGCAGAAGTAAAAGCAGTTGCCACAAGAGCATCTTTGCATTTCATTGATAGAGCAACACTTCCCAAGGATGTAATCCTGTACACCGAAGAGGATGAATGGTCCACCTGGAACAAAGTTGGTGATAGTGTGCTTCACATTGAGCTCCGCAGTTGGGCAGATATCTTGATTATCGCCCCATTGTCAGCAAACACACTAGGCAAGATTGCTGGGGGATTGTGTGACAATCTACTGACGTGCATTGTACGAGCATGGGACTACAGCAAGCCTTTCTTCGTTGCACCAGCCATGAACACTTTGATATGGAAGAATCCCTTCACGGAGCAACATATCATGTCGATTGATGAACTTGGAGTTTCACTCATCCCACCTGTGACGAAGAGGCTGGCTTGTGGAGATTACGGGAATGGAGCAATGGCAGAACCTTCTGTGATTTATTCCACTGTAAGGCTCTTTTTCGAGTCACGAGTTCAACAGAGTGGTAATATCGTTCAGCAACCAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0042538 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

229

Amino Acids

25.25

Weight (kDa)

6.07

Isoelectric Point (pI)

62.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	67
AccII	CGCG	1 cut(s)	49
AccIII	TCCGGA	1 cut(s)	23
AciI	CCGC	2 cut(s)	129, 328
AfaI	GTAC	2 cut(s)	263, 426
AfiI	CCNNNNNNNGG	2 cut(s)	334, 627
AgsI	TTSAA	1 cut(s)	653
AjiI	CACGTC	1 cut(s)	417
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	2 cut(s)	140, 325
AluI	AGCT	2 cut(s)	140, 325
Alw21I	GWGCWC	1 cut(s)	327
Aor13HI	TCCGGA	1 cut(s)	23
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	2 cut(s)	122, 140
Asp700I	GAANNNNTTC	1 cut(s)	494
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	314
AsuNHI	GCTAGC	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	282
BanII	GRGCYC	1 cut(s)	327
BauI	CACGAG	1 cut(s)	645
Bbv12I	GWGCWC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	109, 127
BciT130I	CCWGG	1 cut(s)	289
BclI	TGATCA	1 cut(s)	7
BfaI	CTAG	2 cut(s)	126, 377
BfmI	CTRYAG	1 cut(s)	439
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	2 cut(s)	123, 141
BlsI	GCNGC	2 cut(s)	124, 142
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	282
BmgBI	CACGTC	1 cut(s)	417
BmgT120I	GGNCC	1 cut(s)	282
BmrFI	CCNGG	1 cut(s)	289
BmsI	GCATC	1 cut(s)	221
BmtI	GCTAGC	1 cut(s)	129
BplI	GAGNNNNNCTC	2 cut(s)	525, 557
BsaJI	CCNNGG	3 cut(s)	98, 107, 246
BsaWI	WCCGGW	1 cut(s)	23
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 627
Bse1I	ACTGG	1 cut(s)	680
Bse3DI	GCAATG	1 cut(s)	600
BseAI	TCCGGA	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	3 cut(s)	98, 107, 246
BseGI	GGATG	3 cut(s)	256, 280, 543
BseLI	CCNNNNNNNGG	2 cut(s)	334, 627
BseMI	GCAATG	1 cut(s)	600
BseNI	ACTGG	1 cut(s)	680
BseXI	GCAGC	2 cut(s)	109, 127
BseYI	CCCAGC	1 cut(s)	389
BsgI	GTGCAG	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	49
BshFI	GGCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	2 cut(s)	334, 627
BsmFI	GGGAC	1 cut(s)	449
BsnI	GGCC	1 cut(s)	106
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp13I	TCCGGA	1 cut(s)	23
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	7
BspACI	CCGC	2 cut(s)	129, 328
BspANI	GGCC	1 cut(s)	106
BspEI	TCCGGA	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	49
BspMI	ACCTGC	1 cut(s)	67
BspOI	GCTAGC	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	600
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	680
BssECI	CCNNGG	3 cut(s)	98, 107, 246
BssMI	GATC	1 cut(s)	7
BssSI	CACGAG	1 cut(s)	645
BssT1I	CCWWGG	2 cut(s)	98, 246
Bst2BI	CACGAG	1 cut(s)	645
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	625
Bst6I	CTCTTC	2 cut(s)	264, 554
BstAPI	GCANNNNNTGC	1 cut(s)	162
BstAUI	TGTACA	1 cut(s)	261
BstC8I	GCNNGC	3 cut(s)	127, 446, 567
BstF5I	GGATG	3 cut(s)	256, 280, 543
BstFNI	CGCG	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	1 cut(s)	10
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 92, 162, 209
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	439
BstUI	CGCG	1 cut(s)	49
BstV1I	GCAGC	2 cut(s)	109, 127
BsuRI	GGCC	1 cut(s)	106
BtrI	CACGTC	1 cut(s)	417
BtsCI	GGATG	3 cut(s)	256, 280, 543
BtsIMutI	CAGTG	1 cut(s)	621
BveI	ACCTGC	1 cut(s)	67
Cac8I	GCNNGC	3 cut(s)	127, 446, 567
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	1 cut(s)	282
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	262, 425
CviAII	CATG	4 cut(s)	43, 432, 469, 514
CviJI	RGCY	9 cut(s)	86, 106, 140, 325, 448, 467, 565, 569, 631
CviKI_1	RGCY	9 cut(s)	86, 106, 140, 325, 448, 467, 565, 569, 631
CviQI	GTAC	2 cut(s)	262, 425
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
Eam1104I	CTCTTC	2 cut(s)	264, 554
EarI	CTCTTC	2 cut(s)	264, 554
Ecl136II	GAGCTC	1 cut(s)	325
Eco130I	CCWWGG	2 cut(s)	98, 246
Eco147I	AGGCCT	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	327
Eco32I	GATATC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	282
Eco53kI	GAGCTC	1 cut(s)	325
EcoICRI	GAGCTC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	343
EcoT14I	CCWWGG	2 cut(s)	98, 246
EcoT38I	GRGCYC	1 cut(s)	327
ErhI	CCWWGG	2 cut(s)	98, 246
FaeI	CATG	4 cut(s)	46, 435, 472, 517
FalI	AAGNNNNNCTT	6 cut(s)	199, 231, 437, 469, 479, 511
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	4 cut(s)	42, 431, 468, 513
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	2 cut(s)	123, 141
FokI	GGATG	3 cut(s)	263, 287, 530
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	2 cut(s)	123, 141
FspBI	CTAG	2 cut(s)	126, 377
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	2 cut(s)	123, 141
GsaI	CCCAGC	1 cut(s)	393
HaeIII	GGCC	1 cut(s)	106
HapII	CCGG	1 cut(s)	24
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	1 cut(s)	51
Hin1II	CATG	4 cut(s)	46, 435, 472, 517
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HinfI	GANTC	4 cut(s)	64, 112, 490, 641
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	2 cut(s)	264, 285
Hpy188I	TCNGA	3 cut(s)	55, 111, 178
Hpy188III	TCNNGA	4 cut(s)	24, 68, 346, 645
Hpy8I	GTNNAC	2 cut(s)	264, 285
HpyAV	CCTTC	3 cut(s)	23, 505, 615
HpyCH4III	ACNGT	1 cut(s)	625
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	4 cut(s)	95, 220, 420, 461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 92, 162, 209
HpySE526I	ACGT	1 cut(s)	416
Hsp92II	CATG	4 cut(s)	46, 435, 472, 517
HspAI	GCGC	1 cut(s)	49
Kpn2I	TCCGGA	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	3 cut(s)	330, 502, 590
Lsp1109I	GCAGC	2 cut(s)	109, 127
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	2 cut(s)	126, 377
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	3 cut(s)	401, 553, 642
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	4 cut(s)	281, 445, 499, 571
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	1 cut(s)	72
MlyI	GAGTC	2 cut(s)	73, 650
MnlI	CCTC	5 cut(s)	20, 96, 117, 265, 555
MroI	TCCGGA	1 cut(s)	23
MroXI	GAANNNNTTC	1 cut(s)	494
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MvnI	CGCG	1 cut(s)	49
MwoI	GCNNNNNNNGC	4 cut(s)	48, 92, 162, 209
NdeII	GATC	1 cut(s)	7
NheI	GCTAGC	1 cut(s)	125
NlaIII	CATG	4 cut(s)	46, 435, 472, 517
NmuCI	GTSAC	3 cut(s)	401, 553, 642
PceI	AGGCCT	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	2 cut(s)	112, 490
PkrI	GCNGC	2 cut(s)	124, 142
PleI	GAGTC	2 cut(s)	72, 649
PpsI	GAGTC	2 cut(s)	72, 649
Psp124BI	GAGCTC	1 cut(s)	327
Psp6I	CCWGG	1 cut(s)	287
PspFI	CCCAGC	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	287
PspPI	GGNCC	1 cut(s)	282
RsaI	GTAC	2 cut(s)	263, 426
RsaNI	GTAC	2 cut(s)	262, 425
SacI	GAGCTC	1 cut(s)	327
SatI	GCNGC	2 cut(s)	123, 141
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	1 cut(s)	282
SchI	GAGTC	2 cut(s)	73, 650
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	9 cut(s)	15, 61, 142, 162, 290, 327, 419, 553, 607
SfaNI	GCATC	1 cut(s)	221
SfcI	CTRYAG	1 cut(s)	439
SinI	GGWCC	1 cut(s)	282
Sse9I	AATT	1 cut(s)	72
SseBI	AGGCCT	1 cut(s)	106
SsiI	CCGC	2 cut(s)	129, 328
SspMI	CTAG	2 cut(s)	126, 377
SstI	GAGCTC	1 cut(s)	327
StuI	AGGCCT	1 cut(s)	106
StyD4I	CCNGG	1 cut(s)	287
StyI	CCWWGG	2 cut(s)	98, 246
TaaI	ACNGT	1 cut(s)	625
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	2 cut(s)	518, 639
TasI	AATT	1 cut(s)	72
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	112, 490
TscAI	CASTG	1 cut(s)	628
TseFI	GTSAC	3 cut(s)	401, 553, 642
TseI	GCWGC	2 cut(s)	122, 140
Tsp45I	GTSAC	3 cut(s)	401, 553, 642
TspDTI	ATGAA	5 cut(s)	17, 214, 291, 485, 540
TspGWI	ACGGA	1 cut(s)	515
TspRI	CASTG	1 cut(s)	628
VpaK11BI	GGWCC	1 cut(s)	282
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	2 cut(s)	126, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.