Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Reverse (-)

41083338 .. 41091952

Gene Structure 8615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00419690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGTGCAATGGCTCAAGTTCCTGAAATCATTTCTATTGTAAGACAGTGTTTATGGGCAGTGGTTCCAAGATTAGTACCTTACATCAGTAAGCCACGGATTTTGGTGGCTGCTACAGGATGTATAGCTGCGTTTGATTTCATCAAAATATGTAGCTGCTTTTCACAATGGGGAGAGGTACGAGCAGTGGGCACAAGAGAGTCTTTGGAGTATATTGATAGACAGTCATTTCCCACAGATGTGTGGTTTTACACTGATGAGGATGAGTTTAAGATTCACAATATCATTAGAGGTGACAACGTGCTCGCCATTCATCTCTGCGATTGGGCTGATGTAATTGTCATTGCTCCTTTGTCAGCAAACACACTATCCAAGTTGTATTCAGTATCTTGCAAGGAGTTGTGGATTGTTGTTTGCGGTTTGGATGACAATCTACTTACCTCCATCATATATGGATGGGACTATAGCAAGAAACCCTTCTATGTTGCCCCAGCCATGTGCACATCAATGTGGAGAGATGGACGAACACAACATTATCTGGAGTCCATAACTCAGAAATATGGGATGTCAGTGATCAAGCCTCTAAGTTCCAGTGGGCAAATGGCTGATATATCCAGAATCATCTTGACTGTAAAACAATATTTCATTACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0042538 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

217

Amino Acids

24.6

Weight (kDa)

6.29

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavoprotein	PF02441	33 - 213	7e-18	Flavoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	417
AfaI	GTAC	2 cut(s)	78, 180
AleI	CACNNNNGTG	1 cut(s)	239
AluBI	AGCT	2 cut(s)	128, 156
AluI	AGCT	2 cut(s)	128, 156
Alw21I	GWGCWC	2 cut(s)	306, 503
Alw44I	GTGCAC	1 cut(s)	499
ApaLI	GTGCAC	1 cut(s)	499
ApeKI	GCWGC	3 cut(s)	110, 128, 156
Asp700I	GAANNNNTTC	1 cut(s)	476
AsuHPI	GGTGA	1 cut(s)	305
BaeGI	GKGCMC	2 cut(s)	194, 503
Bbv12I	GWGCWC	2 cut(s)	306, 503
BbvI	GCAGC	3 cut(s)	97, 115, 143
BccI	CCATC	3 cut(s)	450, 452, 512
BclI	TGATCA	1 cut(s)	573
BfmI	CTRYAG	2 cut(s)	114, 463
BisI	GCNGC	3 cut(s)	111, 129, 157
BlsI	GCNGC	3 cut(s)	112, 130, 158
BmiI	GGNNCC	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	560
BsaAI	YACGTR	1 cut(s)	651
BsaBI	GATNNNNATC	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	591
Bse3DI	GCAATG	2 cut(s)	15, 342
Bse8I	GATNNNNATC	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	5 cut(s)	125, 268, 430, 461, 570
BseJI	GATNNNNATC	1 cut(s)	429
BseMI	GCAATG	2 cut(s)	15, 342
BseMII	CTCAG	1 cut(s)	566
BseNI	ACTGG	1 cut(s)	591
BseSI	GKGCMC	2 cut(s)	194, 503
BseXI	GCAGC	3 cut(s)	97, 115, 143
BseYI	CCCAGC	1 cut(s)	490
BsiHKAI	GWGCWC	2 cut(s)	306, 503
BslFI	GGGAC	1 cut(s)	473
BsmFI	GGGAC	1 cut(s)	473
Bsp1286I	GDGCHC	3 cut(s)	194, 306, 503
Bsp143I	GATC	1 cut(s)	573
BspACI	CCGC	1 cut(s)	417
BspCNI	CTCAG	1 cut(s)	565
BspLI	GGNNCC	1 cut(s)	66
BsrDI	GCAATG	2 cut(s)	15, 342
BsrI	ACTGG	1 cut(s)	591
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	1 cut(s)	573
Bst4CI	ACNGT	3 cut(s)	48, 225, 631
BstBAI	YACGTR	1 cut(s)	651
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	2 cut(s)	552, 584
BstDSI	CCRYGG	1 cut(s)	95
BstF5I	GGATG	5 cut(s)	125, 268, 430, 461, 570
BstKTI	GATC	1 cut(s)	576
BstMBI	GATC	1 cut(s)	573
BstSFI	CTRYAG	2 cut(s)	114, 463
BstSLI	GKGCMC	2 cut(s)	194, 503
BstSNI	TACGTA	1 cut(s)	651
BstV1I	GCAGC	3 cut(s)	97, 115, 143
BtgI	CCRYGG	1 cut(s)	95
BtsCI	GGATG	5 cut(s)	125, 268, 430, 461, 570
BtsI	GCAGTG	2 cut(s)	66, 192
BtsIMutI	CAGTG	6 cut(s)	53, 66, 192, 252, 576, 598
Cac8I	GCNNGC	1 cut(s)	306
Csp6I	GTAC	2 cut(s)	77, 179
CspCI	CAANNNNNGTGG	2 cut(s)	84, 119
CviAII	CATG	1 cut(s)	496
CviJI	RGCY	9 cut(s)	14, 94, 110, 128, 156, 329, 494, 580, 605
CviKI_1	RGCY	9 cut(s)	14, 94, 110, 128, 156, 329, 494, 580, 605
CviQI	GTAC	2 cut(s)	77, 179
DdeI	CTNAG	2 cut(s)	552, 584
DpnI	GATC	1 cut(s)	575
DpnII	GATC	1 cut(s)	573
Eco105I	TACGTA	1 cut(s)	651
FaeI	CATG	1 cut(s)	499
FalI	AAGNNNNNCTT	4 cut(s)	187, 219, 461, 493
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	1 cut(s)	495
FbaI	TGATCA	1 cut(s)	573
Fnu4HI	GCNGC	3 cut(s)	111, 129, 157
FokI	GGATG	5 cut(s)	132, 275, 437, 468, 577
Fsp4HI	GCNGC	3 cut(s)	111, 129, 157
GluI	GCNGC	3 cut(s)	111, 129, 157
GsaI	CCCAGC	1 cut(s)	494
GsuI	CTGGAG	1 cut(s)	560
Hin1II	CATG	1 cut(s)	499
HinfI	GANTC	4 cut(s)	200, 274, 542, 618
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	501
Hpy188I	TCNGA	1 cut(s)	555
Hpy188III	TCNNGA	4 cut(s)	23, 539, 615, 625
Hpy8I	GTNNAC	1 cut(s)	501
HpyAV	CCTTC	1 cut(s)	487
HpyCH4III	ACNGT	3 cut(s)	48, 225, 631
HpyCH4IV	ACGT	2 cut(s)	300, 650
HpyCH4V	TGCA	3 cut(s)	8, 393, 501
HpyF3I	CTNAG	2 cut(s)	552, 584
HpySE526I	ACGT	2 cut(s)	300, 650
Hsp92II	CATG	1 cut(s)	499
Ksp22I	TGATCA	1 cut(s)	573
Kzo9I	GATC	1 cut(s)	573
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	6 cut(s)	36, 102, 504, 524, 604, 628
Lsp1109I	GCAGC	3 cut(s)	97, 115, 143
MaeII	ACGT	2 cut(s)	300, 650
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	1 cut(s)	575
MboI	GATC	1 cut(s)	573
MhlI	GDGCHC	3 cut(s)	194, 306, 503
MluCI	AATT	1 cut(s)	336
MlyI	GAGTC	2 cut(s)	209, 551
MnlI	CCTC	5 cut(s)	169, 253, 284, 451, 591
MroXI	GAANNNNTTC	1 cut(s)	476
MseI	TTAA	1 cut(s)	270
MslI	CAYNNNNRTG	3 cut(s)	239, 506, 508
NdeII	GATC	1 cut(s)	573
NlaIII	CATG	1 cut(s)	499
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	293
OliI	CACNNNNGTG	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	2 cut(s)	274, 618
PkrI	GCNGC	3 cut(s)	112, 130, 158
PleI	GAGTC	2 cut(s)	208, 550
PpsI	GAGTC	2 cut(s)	208, 550
Ppu21I	YACGTR	1 cut(s)	651
PspFI	CCCAGC	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	66
RsaI	GTAC	2 cut(s)	78, 180
RsaNI	GTAC	2 cut(s)	77, 179
RseI	CAYNNNNRTG	3 cut(s)	239, 506, 508
SaqAI	TTAA	1 cut(s)	270
SatI	GCNGC	3 cut(s)	111, 129, 157
Sau3AI	GATC	1 cut(s)	573
SchI	GAGTC	2 cut(s)	209, 551
SduI	GDGCHC	3 cut(s)	194, 306, 503
SetI	ASST	8 cut(s)	82, 130, 158, 180, 295, 303, 443, 653
SfcI	CTRYAG	2 cut(s)	114, 463
SmiMI	CAYNNNNRTG	3 cut(s)	239, 506, 508
SmlI	CTYRAG	1 cut(s)	15
SmoI	CTYRAG	1 cut(s)	15
SnaBI	TACGTA	1 cut(s)	651
Sse9I	AATT	1 cut(s)	336
SsiI	CCGC	1 cut(s)	417
SspI	AATATT	1 cut(s)	641
TaaI	ACNGT	3 cut(s)	48, 225, 631
TaiI	ACGT	2 cut(s)	303, 653
TasI	AATT	1 cut(s)	336
TfiI	GAWTC	2 cut(s)	274, 618
Tru1I	TTAA	1 cut(s)	270
Tru9I	TTAA	1 cut(s)	270
TscAI	CASTG	6 cut(s)	53, 66, 192, 259, 576, 598
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	3 cut(s)	110, 128, 156
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	3 cut(s)	130, 302, 634
TspGWI	ACGGA	1 cut(s)	112
TspRI	CASTG	6 cut(s)	53, 66, 192, 259, 576, 598
VneI	GTGCAC	1 cut(s)	499
XcmI	CCANNNNNNNNNTGG	1 cut(s)	598
XmnI	GAANNNNTTC	1 cut(s)	476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.