Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Forward (+)

8271116 .. 8272211

Gene Structure 1096 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG104400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTGTGTGTTTGAGACAAGAGAACCAGTGAGGGGTTTTGTAATACTGCCTTATTGCGTGAGAGACTTGAGGCAGTTATGGTGTTACGCAGCTGGGAAGATGGAAAAGAACAGTAAAACTGTGCTGTTGCTAGAGGTGAGGAAAATGCTCACATATGATCCTGCTCAAAGAATCACAGCGAGAAAAGCAATGGAGCATCCCTATTTCAACCAAGATGGCTTTGAGATCGAGGTGGCAGTTCTGAAGATTTTGTGGGAATGTAATTGGGATAGTGGGTTATCCTTGGTTCCTAGTCACTTGGAAATAGCTAGTAGTGTTACTGAAATGGAGATGGTTAATACAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000278 GO:0001558 GO:0001701 GO:0001824 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005737 GO:0006355 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006915 GO:0007049 GO:0007088 GO:0007275 GO:0007346 GO:0008144 GO:0008150 GO:0008152 GO:0008219 GO:0008283 GO:0009790 GO:0009792 GO:0009889 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010564 GO:0010646 GO:0010647 GO:0010648 GO:0010941 GO:0012501 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019219 GO:0019222 GO:0019538 GO:0023051 GO:0023056 GO:0023057 GO:0030554 GO:0031090 GO:0031323 GO:0031326 GO:0031347 GO:0031349 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033043 GO:0034121 GO:0034123 GO:0034124 GO:0034126 GO:0035639 GO:0036094 GO:0036211 GO:0040008 GO:0042981 GO:0043009 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045089 GO:0048471 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048856 GO:0050684 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0051726 GO:0051783 GO:0060255 GO:0060548 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0097159 GO:0097367 GO:0097472 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903311 GO:1903506 GO:2000112 GO:2001141 GO:2001233 GO:2001234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

115

Amino Acids

13.29

Weight (kDa)

5.68

Isoelectric Point (pI)

49.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	152
AcuI	CTGAAG	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	208
AluBI	AGCT	2 cut(s)	92, 308
AluI	AGCT	2 cut(s)	92, 308
Alw26I	GTCTC	2 cut(s)	8, 57
AlwI	GGATC	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	148
BbvI	GCAGC	1 cut(s)	101
BccI	CCATC	3 cut(s)	94, 209, 325
BcoDI	GTCTC	2 cut(s)	8, 57
BfaI	CTAG	3 cut(s)	131, 291, 309
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
BmiI	GGNNCC	1 cut(s)	288
BmsI	GCATC	1 cut(s)	205
BpuEI	CTTGAG	1 cut(s)	88
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	26
Bse3DI	GCAATG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	101
BseYI	CCCAGC	1 cut(s)	92
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	2 cut(s)	8, 57
Bsp143I	GATC	2 cut(s)	157, 225
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	2 cut(s)	157, 225
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	113, 121
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	2 cut(s)	160, 228
BstMAI	GTCTC	2 cut(s)	8, 57
BstMBI	GATC	2 cut(s)	157, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	1 cut(s)	33
CviJI	RGCY	3 cut(s)	92, 219, 308
CviKI_1	RGCY	3 cut(s)	92, 219, 308
DpnI	GATC	2 cut(s)	159, 227
DpnII	GATC	2 cut(s)	157, 225
Eco130I	CCWWGG	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaiI	YATR	3 cut(s)	79, 154, 156
FauNDI	CATATG	1 cut(s)	154
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	90
FspBI	CTAG	3 cut(s)	131, 291, 309
GluI	GCNGC	1 cut(s)	90
GsaI	CCCAGC	1 cut(s)	96
HinfI	GANTC	1 cut(s)	171
HphI	GGTGA	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	243
HpyCH4III	ACNGT	2 cut(s)	113, 121
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
Kzo9I	GATC	2 cut(s)	157, 225
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	4 cut(s)	39, 78, 174, 327
Lsp1109I	GCAGC	1 cut(s)	101
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	3 cut(s)	131, 291, 309
MaeIII	GTNAC	3 cut(s)	83, 293, 316
MalI	GATC	2 cut(s)	159, 227
MboI	GATC	2 cut(s)	157, 225
MboII	GAAGA	2 cut(s)	109, 256
MluCI	AATT	1 cut(s)	262
MnlI	CCTC	5 cut(s)	24, 63, 127, 132, 223
MseI	TTAA	1 cut(s)	336
MspA1I	CMGCKG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	185
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	2 cut(s)	157, 225
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	91
PspFI	CCCAGC	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	288
PvuII	CAGCTG	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	2 cut(s)	157, 225
SetI	ASST	4 cut(s)	94, 138, 234, 310
SfaNI	GCATC	1 cut(s)	205
SmlI	CTYRAG	1 cut(s)	67
SmoI	CTYRAG	1 cut(s)	67
Sse9I	AATT	1 cut(s)	262
SspMI	CTAG	3 cut(s)	131, 291, 309
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	113, 121
TaqI	TCGA	1 cut(s)	228
TasI	AATT	1 cut(s)	262
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	293
TspRI	CASTG	1 cut(s)	33
XspI	CTAG	3 cut(s)	131, 291, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.