Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Forward (+)

57691537 .. 57695923

Gene Structure 4387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGATTTTGTCGAACCTGGGAGCTCTGGAACCCGGAGGATACAAGCTCCGAGGAGGCCACGTGTTCTACTTGGTGCTAGTGGAAGTGTAGCGGCCTTGGATTTTGATGAACTCTGCCATTCTTTCTGTGAATGGGCAGAAGTAAGAGCAGTTGCCACAAGAGCGTCTTTGCATTACATTGACAGAGCATCATTGCCCAAGGATGTAATCCTTTACACTGATGAAGATGAATTGTCTTGGTGGGACGAAACAGGTGATAATGTGGTTCACATTGAGCTGCAGAATTGGGCTGATATCATGGTTATTGCTCCCTTATCAGTAAATACACTAGGAAAGATTGCTGCTGGATTGTGTGACAATCTACTTACCAATGTCGTATTTGCTTGGAATTACGAAAAACCTTTGTTTGTTGCACCAGCCATGAATGCCTTGATGTGGAGGAATTCTTTCACCGAGAAGCATCTGATATCAATTGATGAACAGGGAATTATACTCATACGACCTGAGGATGGCAAAATGGCTGAACATTCTATAATTTACTCCACTGTTATGGCTTGTCCCAAACTTGGAAATGTTATATGGGAGCCAATACAAGCCGATGCTGCACTCAGAAAGCCAAGAATTCTACTCGGTGCTAGTGGAAGTGTAGCTGCCATGAAACTCAGTCACCTCTGCCGTAGTTTTTCTGATTGGGCAGAAGTAAGAGCAGTTGCCACAGGAGCATCTTTGAGATTCATTGATAAAGCATCATTTCCCAATGTAATTGCTTACACCGATGGGGATGAATTTTCCCGTTGGAACACAAAAGATGATAGTGTGCTTCCCGTTAAGCTCCACCACTGGGCAGATATCATGGTTATTGCTCCATTATCAGCAAACACATTAGGCAAGATTGCTGGAGGGCTGTGTGACAATCTACTCACCCACATTGTATATGCATGGGATGACAGCAAGCCTTTGTTTGTTGCGCCAGCTATGAACACCCTGATGTGGGATAATCCCTTGACGCAGCAACACATCAAGGCGATTGAGGAACTTGGATTTTCACTCATCCTACCCGTCACAAGGAATGGTGCAATGGCTGAAGTTTCGTTGATATACTCCACTGTGAGAACCTTTGTACATTCGCACGTTCAACCAGCAGGGAGAGTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

385

Amino Acids

42.6

Weight (kDa)

5.54

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavoprotein	PF02441	21 - 181	3.6e-25	Flavoprotein
Flavoprotein	PF02441	207 - 370	5.9e-26	Flavoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	92
AcsI	RAATTY	3 cut(s)	442, 621, 785
AcuI	CTGAAG	1 cut(s)	1104
AcvI	CACGTG	1 cut(s)	62
AfaI	GTAC	1 cut(s)	1122
AfiI	CCNNNNNNNGG	7 cut(s)	435, 509, 566, 841, 990, 991, 1065
AflIII	ACRYGT	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	1136
AjnI	CCWGG	1 cut(s)	16
AluBI	AGCT	6 cut(s)	24, 47, 277, 650, 832, 974
AluI	AGCT	6 cut(s)	24, 47, 277, 650, 832, 974
Alw21I	GWGCWC	1 cut(s)	26
AoxI	GGCC	2 cut(s)	56, 93
ApeKI	GCWGC	5 cut(s)	277, 341, 602, 650, 1009
ApoI	RAATTY	3 cut(s)	442, 621, 785
Asp700I	GAANNNNTTC	1 cut(s)	446
AspLEI	GCGC	1 cut(s)	970
AsuC2I	CCSGG	1 cut(s)	34
AsuHPI	GGTGA	4 cut(s)	266, 442, 659, 913
AxyI	CCTNAGG	1 cut(s)	504
BanII	GRGCYC	1 cut(s)	26
BbrPI	CACGTG	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	5 cut(s)	264, 328, 589, 637, 1021
BccI	CCATC	2 cut(s)	503, 770
BceAI	ACGGC	1 cut(s)	660
BciT130I	CCWGG	1 cut(s)	18
BciVI	GTATCC	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	34
BfaI	CTAG	3 cut(s)	78, 329, 636
BfmI	CTRYAG	1 cut(s)	278
BfuI	GTATCC	1 cut(s)	33
BisI	GCNGC	6 cut(s)	93, 278, 342, 603, 651, 1010
BlsI	GCNGC	6 cut(s)	94, 279, 343, 604, 652, 1011
Bme1390I	CCNGG	2 cut(s)	18, 34
BmiI	GGNNCC	2 cut(s)	31, 585
BmrFI	CCNGG	2 cut(s)	18, 34
BmrI	ACTGGG	1 cut(s)	850
BmsI	GCATC	5 cut(s)	197, 469, 589, 731, 755
BmuI	ACTGGG	1 cut(s)	850
BpmI	CTGGAG	1 cut(s)	918
BpuMI	CCSGG	1 cut(s)	34
BsaAI	YACGTR	1 cut(s)	62
BsaJI	CCNNGG	4 cut(s)	17, 50, 96, 198
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	7 cut(s)	435, 509, 566, 841, 990, 991, 1065
Bse1I	ACTGG	1 cut(s)	845
Bse21I	CCTNAGG	1 cut(s)	504
Bse3DI	GCAATG	2 cut(s)	191, 1083
BseBI	CCWGG	1 cut(s)	18
BseDI	CCNNGG	4 cut(s)	17, 50, 96, 198
BseGI	GGATG	5 cut(s)	208, 514, 787, 949, 1050
BseLI	CCNNNNNNNGG	7 cut(s)	435, 509, 566, 841, 990, 991, 1065
BseMI	GCAATG	2 cut(s)	191, 1083
BseMII	CTCAG	3 cut(s)	495, 622, 676
BseNI	ACTGG	1 cut(s)	845
BseRI	GAGGAG	1 cut(s)	67
BseXI	GCAGC	5 cut(s)	264, 328, 589, 637, 1021
BsgI	GTGCAG	1 cut(s)	588
BshFI	GGCC	2 cut(s)	58, 95
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	34
BslFI	GGGAC	2 cut(s)	257, 543
BslI	CCNNNNNNNGG	7 cut(s)	435, 509, 566, 841, 990, 991, 1065
BsmFI	GGGAC	2 cut(s)	257, 543
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	2 cut(s)	58, 95
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp1407I	TGTACA	1 cut(s)	1120
BspACI	CCGC	1 cut(s)	92
BspANI	GGCC	2 cut(s)	58, 95
BspCNI	CTCAG	3 cut(s)	496, 621, 675
BspLI	GGNNCC	2 cut(s)	31, 585
BspMAI	CTGCAG	1 cut(s)	282
BsrDI	GCAATG	2 cut(s)	191, 1083
BsrGI	TGTACA	1 cut(s)	1120
BsrI	ACTGG	1 cut(s)	845
BssECI	CCNNGG	4 cut(s)	17, 50, 96, 198
BssT1I	CCWWGG	2 cut(s)	96, 198
Bst2UI	CCWGG	1 cut(s)	18
Bst4CI	ACNGT	2 cut(s)	547, 1108
BstAUI	TGTACA	1 cut(s)	1120
BstBAI	YACGTR	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	953, 972
BstDEI	CTNAG	3 cut(s)	504, 608, 662
BstF5I	GGATG	5 cut(s)	208, 514, 787, 949, 1050
BstHHI	GCGC	1 cut(s)	970
BstMWI	GCNNNNNNNGC	4 cut(s)	161, 425, 602, 719
BstNI	CCWGG	1 cut(s)	18
BstSCI	CCNGG	2 cut(s)	16, 32
BstSFI	CTRYAG	1 cut(s)	278
BstV1I	GCAGC	5 cut(s)	264, 328, 589, 637, 1021
BstXI	CCANNNNNNTGG	1 cut(s)	550
Bsu36I	CCTNAGG	1 cut(s)	504
BsuI	GTATCC	1 cut(s)	33
BsuRI	GGCC	2 cut(s)	58, 95
BtsCI	GGATG	5 cut(s)	208, 514, 787, 949, 1050
BtsIMutI	CAGTG	4 cut(s)	216, 543, 838, 1104
Cac8I	GCNNGC	2 cut(s)	953, 972
CfoI	GCGC	1 cut(s)	970
CseI	GACGC	2 cut(s)	153, 1015
Csp6I	GTAC	1 cut(s)	1121
CviAII	CATG	5 cut(s)	298, 421, 655, 853, 939
CviQI	GTAC	1 cut(s)	1121
DdeI	CTNAG	3 cut(s)	504, 608, 662
Ecl136II	GAGCTC	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	96, 198
Eco24I	GRGCYC	1 cut(s)	26
Eco32I	GATATC	3 cut(s)	295, 468, 850
Eco53kI	GAGCTC	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	1104
Eco72I	CACGTG	1 cut(s)	62
Eco81I	CCTNAGG	1 cut(s)	504
EcoICRI	GAGCTC	1 cut(s)	24
EcoRI	GAATTC	2 cut(s)	442, 621
EcoRII	CCWGG	1 cut(s)	16
EcoRV	GATATC	3 cut(s)	295, 468, 850
EcoT14I	CCWWGG	2 cut(s)	96, 198
EcoT22I	ATGCAT	1 cut(s)	940
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	2 cut(s)	96, 198
FaeI	CATG	5 cut(s)	301, 424, 658, 856, 942
FalI	AAGNNNNNCTT	2 cut(s)	151, 183
FaqI	GGGAC	2 cut(s)	257, 543
FatI	CATG	5 cut(s)	297, 420, 654, 852, 938
Fnu4HI	GCNGC	6 cut(s)	93, 278, 342, 603, 651, 1010
FokI	GGATG	5 cut(s)	215, 521, 794, 956, 1037
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	6 cut(s)	93, 278, 342, 603, 651, 1010
FspBI	CTAG	3 cut(s)	78, 329, 636
GlaI	GCGC	1 cut(s)	969
GluI	GCNGC	6 cut(s)	93, 278, 342, 603, 651, 1010
GsuI	CTGGAG	1 cut(s)	918
HaeIII	GGCC	2 cut(s)	58, 95
HapII	CCGG	1 cut(s)	34
HgaI	GACGC	2 cut(s)	153, 1015
HhaI	GCGC	1 cut(s)	970
Hin1II	CATG	5 cut(s)	301, 424, 658, 856, 942
Hin6I	GCGC	1 cut(s)	968
HinP1I	GCGC	1 cut(s)	968
HinfI	GANTC	1 cut(s)	732
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	4 cut(s)	266, 442, 659, 913
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	4 cut(s)	51, 465, 611, 688
Hpy188III	TCNNGA	1 cut(s)	27
Hpy8I	GTNNAC	1 cut(s)	268
HpyCH4III	ACNGT	2 cut(s)	547, 1108
HpyCH4IV	ACGT	2 cut(s)	61, 1131
HpyCH4V	TGCA	6 cut(s)	172, 280, 413, 605, 938, 1076
HpyF10VI	GCNNNNNNNGC	4 cut(s)	161, 425, 602, 719
HpyF3I	CTNAG	3 cut(s)	504, 608, 662
HpySE526I	ACGT	2 cut(s)	61, 1131
Hsp92II	CATG	5 cut(s)	301, 424, 658, 856, 942
HspAI	GCGC	1 cut(s)	968
LmnI	GCTCC	7 cut(s)	21, 52, 313, 583, 719, 837, 868
Lsp1109I	GCAGC	5 cut(s)	264, 328, 589, 637, 1021
LweI	GCATC	5 cut(s)	197, 469, 589, 731, 755
MaeI	CTAG	3 cut(s)	78, 329, 636
MaeII	ACGT	2 cut(s)	61, 1131
MaeIII	GTNAC	4 cut(s)	353, 665, 908, 1060
MboII	GAAGA	1 cut(s)	236
MfeI	CAATTG	1 cut(s)	471
MhlI	GDGCHC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	776
MnlI	CCTC	8 cut(s)	30, 45, 48, 432, 499, 680, 893, 1024
Mph1103I	ATGCAT	1 cut(s)	940
MroXI	GAANNNNTTC	1 cut(s)	446
MseI	TTAA	1 cut(s)	828
MslI	CAYNNNNRTG	2 cut(s)	548, 986
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	2 cut(s)	18, 34
MunI	CAATTG	1 cut(s)	471
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	4 cut(s)	161, 425, 602, 719
NciI	CCSGG	1 cut(s)	34
NlaIII	CATG	5 cut(s)	301, 424, 658, 856, 942
NlaIV	GGNNCC	2 cut(s)	31, 585
NmuCI	GTSAC	4 cut(s)	353, 665, 908, 1060
NsiI	ATGCAT	1 cut(s)	940
PctI	GAATGC	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	446
PfeI	GAWTC	1 cut(s)	732
PkrI	GCNGC	6 cut(s)	94, 279, 343, 604, 652, 1011
PmaCI	CACGTG	1 cut(s)	62
PmlI	CACGTG	1 cut(s)	62
Ppu21I	YACGTR	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	26
Psp6I	CCWGG	1 cut(s)	16
PspCI	CACGTG	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	16
PspN4I	GGNNCC	2 cut(s)	31, 585
PstI	CTGCAG	1 cut(s)	282
RsaI	GTAC	1 cut(s)	1122
RsaNI	GTAC	1 cut(s)	1121
RseI	CAYNNNNRTG	2 cut(s)	548, 986
SacI	GAGCTC	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	828
SatI	GCNGC	6 cut(s)	93, 278, 342, 603, 651, 1010
ScrFI	CCNGG	2 cut(s)	18, 34
SduI	GDGCHC	1 cut(s)	26
SfaNI	GCATC	5 cut(s)	197, 469, 589, 731, 755
SfcI	CTRYAG	1 cut(s)	278
SmiMI	CAYNNNNRTG	2 cut(s)	548, 986
SsiI	CCGC	1 cut(s)	92
SspMI	CTAG	3 cut(s)	78, 329, 636
SstI	GAGCTC	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	16, 32
StyI	CCWWGG	2 cut(s)	96, 198
TaaI	ACNGT	2 cut(s)	547, 1108
TaiI	ACGT	2 cut(s)	64, 1134
TaqI	TCGA	1 cut(s)	12
TatI	WGTACW	1 cut(s)	1120
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	732
Tru1I	TTAA	1 cut(s)	828
Tru9I	TTAA	1 cut(s)	828
TscAI	CASTG	4 cut(s)	223, 550, 845, 1111
TseFI	GTSAC	4 cut(s)	353, 665, 908, 1060
TseI	GCWGC	5 cut(s)	277, 341, 602, 650, 1009
Tsp45I	GTSAC	4 cut(s)	353, 665, 908, 1060
TspDTI	ATGAA	9 cut(s)	123, 237, 243, 437, 492, 671, 724, 798, 992
TspRI	CASTG	4 cut(s)	223, 550, 845, 1111
XapI	RAATTY	3 cut(s)	442, 621, 785
XmnI	GAANNNNTTC	1 cut(s)	446
XspI	CTAG	3 cut(s)	78, 329, 636
Zsp2I	ATGCAT	1 cut(s)	940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.