Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Reverse (-)

6167640 .. 6168966

Gene Structure 1327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G18030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAGAATGGGAAAAGAGACAGACAAGACATGGAAGTGAATACCACACCGAGGAAGCCTCGTGTACTACTCGCTGCAAGTGGAAGCGTCGCTGCTATCAAATTCGGCAATCTCTGCCATTGCTTCACCGAATGGGCAGAAGTCAGAGCCGTCGTTACGAAATCATCTCTACATTTCCTCGATAAACTCTCTCTCCCACAAGAAGTGACTCTGTATACTGATGAAGATGAATGGTCTAGCTGGAACAAGATCGGTGATCCTGTCCTTCACATCGAGCTTAGACGTTGGGCTGATGTTTTAGTCATTGCTCCTTTGTCTGCTAACACCTTAGGCAAGATTGCTGGTGGGCTTTGTGATAATCTTCTGACTTGCATTATACGAGCTTGGGACTATACCAAACCACTGTTTGTTGCTCCAGCTATGAATACTTTGATGTGGAACAATCCTTTCACTGAAAGGCATCTTTTGTCTCTTGATGAACTGGGAATCACACTTATTCCTCCTATCAAGAAGAGACTTGCCTGTGGAGACTACGGTAATGGAGCTATGGCTGAGCCCTCTCTTATCTATTCCACTGTCAGACTCTTCTGGGAGTCTCAGGCTCATCAGCAAACCGGTGGAACTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0042538 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

209

Amino Acids

23.35

Weight (kDa)

6.21

Isoelectric Point (pI)

35.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavoprotein	PF02441	21 - 191	5.5e-28	Flavoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	215
AclWI	GGATC	1 cut(s)	251
AcsI	RAATTY	1 cut(s)	101
AfaI	GTAC	1 cut(s)	66
AfiI	CCNNNNNNNGG	1 cut(s)	51
AgeI	ACCGGT	1 cut(s)	614
AhlI	ACTAGT	1 cut(s)	623
AluBI	AGCT	5 cut(s)	240, 277, 383, 419, 545
AluI	AGCT	5 cut(s)	240, 277, 383, 419, 545
Alw26I	GTCTC	5 cut(s)	12, 474, 508, 522, 600
AlwI	GGATC	1 cut(s)	251
ApeKI	GCWGC	2 cut(s)	74, 92
ApoI	RAATTY	1 cut(s)	101
AsiGI	ACCGGT	1 cut(s)	614
AsuHPI	GGTGA	2 cut(s)	118, 266
AxyI	CCTNAGG	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	558
BauI	CACGAG	1 cut(s)	60
BbvI	GCAGC	2 cut(s)	61, 79
BceAI	ACGGC	1 cut(s)	134
BcoDI	GTCTC	5 cut(s)	12, 474, 508, 522, 600
BcuI	ACTAGT	1 cut(s)	623
BfaI	CTAG	2 cut(s)	237, 624
BisI	GCNGC	2 cut(s)	75, 93
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	2 cut(s)	76, 94
BmrI	ACTGGG	1 cut(s)	491
BmsI	GCATC	1 cut(s)	469
BmuI	ACTGGG	1 cut(s)	491
BplI	GAGNNNNNCTC	2 cut(s)	43, 75
BpmI	CTGGAG	1 cut(s)	399
Bpu1102I	GCTNAGC	1 cut(s)	552
BsaJI	CCNNGG	1 cut(s)	50
BsaWI	WCCGGW	1 cut(s)	614
BsaXI	ACNNNNNCTCC	2 cut(s)	177, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse118I	RCCGGY	1 cut(s)	614
Bse1I	ACTGG	1 cut(s)	486
Bse21I	CCTNAGG	1 cut(s)	328
Bse3DI	GCAATG	2 cut(s)	118, 303
BseDI	CCNNGG	1 cut(s)	50
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMI	GCAATG	2 cut(s)	118, 303
BseMII	CTCAG	2 cut(s)	543, 611
BseNI	ACTGG	1 cut(s)	486
BseXI	GCAGC	2 cut(s)	61, 79
BshTI	ACCGGT	1 cut(s)	614
BsiSI	CCGG	1 cut(s)	615
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	5 cut(s)	12, 474, 508, 522, 600
BsmFI	GGGAC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp143I	GATC	2 cut(s)	249, 256
Bsp1720I	GCTNAGC	1 cut(s)	552
BspCNI	CTCAG	2 cut(s)	544, 610
BspPI	GGATC	1 cut(s)	251
BsrDI	GCAATG	2 cut(s)	118, 303
BsrFI	RCCGGY	1 cut(s)	614
BsrI	ACTGG	1 cut(s)	486
BssAI	RCCGGY	1 cut(s)	614
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	2 cut(s)	249, 256
BssNAI	GTATAC	1 cut(s)	216
BssSI	CACGAG	1 cut(s)	60
Bst1107I	GTATAC	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	60
Bst4CI	ACNGT	3 cut(s)	405, 536, 577
Bst6I	CTCTTC	2 cut(s)	506, 590
BstAPI	GCANNNNNTGC	1 cut(s)	114
BstDEI	CTNAG	4 cut(s)	278, 328, 552, 597
BstKTI	GATC	2 cut(s)	252, 259
BstMAI	GTCTC	5 cut(s)	12, 474, 508, 522, 600
BstMBI	GATC	2 cut(s)	249, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	61, 79
BstZ17I	GTATAC	1 cut(s)	216
Bsu36I	CCTNAGG	1 cut(s)	328
BtsIMutI	CAGTG	3 cut(s)	401, 450, 573
Cfr10I	RCCGGY	1 cut(s)	614
CseI	GACGC	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	65
CspAI	ACCGGT	1 cut(s)	614
CviAII	CATG	1 cut(s)	31
CviQI	GTAC	1 cut(s)	65
DdeI	CTNAG	4 cut(s)	278, 328, 552, 597
DpnI	GATC	2 cut(s)	251, 258
DpnII	GATC	2 cut(s)	249, 256
Eam1104I	CTCTTC	2 cut(s)	506, 590
EarI	CTCTTC	2 cut(s)	506, 590
Eco24I	GRGCYC	1 cut(s)	558
Eco81I	CCTNAGG	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	558
FaeI	CATG	1 cut(s)	34
FaiI	YATR	6 cut(s)	32, 216, 377, 393, 422, 548
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	215
Fnu4HI	GCNGC	2 cut(s)	75, 93
FriOI	GRGCYC	1 cut(s)	558
Fsp4HI	GCNGC	2 cut(s)	75, 93
FspBI	CTAG	2 cut(s)	237, 624
GluI	GCNGC	2 cut(s)	75, 93
GsuI	CTGGAG	1 cut(s)	399
HapII	CCGG	1 cut(s)	615
HgaI	GACGC	1 cut(s)	76
Hin1II	CATG	1 cut(s)	34
HinfI	GANTC	4 cut(s)	208, 486, 582, 593
HpaII	CCGG	1 cut(s)	615
HphI	GGTGA	2 cut(s)	118, 266
Hpy166II	GTNNAC	2 cut(s)	65, 216
Hpy188I	TCNGA	3 cut(s)	146, 366, 581
Hpy188III	TCNNGA	2 cut(s)	473, 508
Hpy8I	GTNNAC	2 cut(s)	65, 216
Hpy99I	CGWCG	2 cut(s)	92, 155
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	3 cut(s)	405, 536, 577
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	2 cut(s)	77, 372
HpyF10VI	GCNNNNNNNGC	1 cut(s)	114
HpyF3I	CTNAG	4 cut(s)	278, 328, 552, 597
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	249, 256
LmnI	GCTCC	3 cut(s)	313, 418, 542
LpnPI	CCDG	8 cut(s)	226, 273, 327, 429, 467, 535, 574, 584
Lsp1109I	GCAGC	2 cut(s)	61, 79
LweI	GCATC	1 cut(s)	469
MaeI	CTAG	2 cut(s)	237, 624
MaeII	ACGT	1 cut(s)	283
MaeIII	GTNAC	2 cut(s)	154, 205
MalI	GATC	2 cut(s)	251, 258
MboI	GATC	2 cut(s)	249, 256
MboII	GAAGA	4 cut(s)	236, 353, 523, 577
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	1 cut(s)	101
MlyI	GAGTC	3 cut(s)	202, 576, 602
MnlI	CCTC	5 cut(s)	45, 69, 188, 510, 568
MseI	TTAA	1 cut(s)	628
MslI	CAYNNNNRTG	1 cut(s)	35
MspI	CCGG	1 cut(s)	615
MwoI	GCNNNNNNNGC	1 cut(s)	114
NdeII	GATC	2 cut(s)	249, 256
NlaIII	CATG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	486
PinAI	ACCGGT	1 cut(s)	614
PkrI	GCNGC	2 cut(s)	76, 94
PleI	GAGTC	3 cut(s)	202, 576, 601
PpsI	GAGTC	3 cut(s)	202, 576, 601
RsaI	GTAC	1 cut(s)	66
RsaNI	GTAC	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	628
SatI	GCNGC	2 cut(s)	75, 93
Sau3AI	GATC	2 cut(s)	249, 256
SchI	GAGTC	3 cut(s)	202, 576, 602
SduI	GDGCHC	1 cut(s)	558
SetI	ASST	7 cut(s)	242, 279, 286, 329, 385, 421, 547
SfaNI	GCATC	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	35
SpeI	ACTAGT	1 cut(s)	623
Sse9I	AATT	1 cut(s)	101
SspMI	CTAG	2 cut(s)	237, 624
TaaI	ACNGT	3 cut(s)	405, 536, 577
TaiI	ACGT	1 cut(s)	286
TaqI	TCGA	2 cut(s)	180, 273
TasI	AATT	1 cut(s)	101
TatI	WGTACW	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	486
Tru1I	TTAA	1 cut(s)	628
Tru9I	TTAA	1 cut(s)	628
TscAI	CASTG	3 cut(s)	408, 457, 580
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	2 cut(s)	74, 92
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	4 cut(s)	237, 243, 437, 492
TspRI	CASTG	3 cut(s)	408, 457, 580
XapI	RAATTY	1 cut(s)	101
XmiI	GTMKAC	1 cut(s)	215
XspI	CTAG	2 cut(s)	237, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.