Rh3DG103600

Flavoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001212
Physical Location & Seq
Forward (+)
8393276 .. 8397977
4702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG103600.1

Sequence Viewer

Length: 1098 bp
ATGCTTTCATATCAGGCACAAGGTGCACAAGGGCCGAGGGTGTTACTAGTTTGTACCCGAAGTGTAGAGGCAAAATTTTTCCCTCATCTTTGCCGTCATTTCTCTGAATGGGCAGAGGTAAAGGCAGTTTTGGACTCAAGTTCTTCAGGTCTCATTGACTTGCAATCAATTCCCAGTGACATACCTTGTTACGACGAAAAATACGAGCAATTGTGGAGATTTGGTGATTCCTTGACCCATACTGTACTCTCTAGATGGGCTGACGTGATTGTTATTGCTCCATTGTCAGTGCAGACACTAGGCAAGATTGCTGTAGGGTTGTCCAAGGATCTCGTCACATGTATCGTGAAAGAATGGGATTATAGAAAGCCCTTTTTTGTTGCCCCTGCCATGAATAACCGAATGTGGAGTAACTTGTTTATAGAGGAGCATATGAGACAGCTTAGGAATCATGGGATTAGGGTCATTGGCCCTAATAATGGTGCAATGGCTCAAGTTCCTGAAATCATTTCTATTGTAAGGCAGTGTTTTTGGGCAGTAGTTCCAAGATTAGTACCTTACATCAGTAAGCCACGGATTTTGGTGGCTGCTACAGGATGTATAGCTGCGTTTGATTTCATCAAAATATGTCGCTGCTTTTCACAATGGGGAGAGGTACGAGCAGTGGGCACAAGAGAGTCTTTGGAGTATATTGATAGACAGTCATTTCCCACAGATGTGTGGTTTTACACTGATGAGGATGAGTTTAAGATTCACAATATCATTAGAGGTGACAACGTGCTCGCCATTCATCTCTGTGATTGGGCTGATGTAATTGTCATTGCTCCTTTGTCAGCAAACACACTATCCAAGGTTGTTTGCGGTTTGGATGACAATCTACTTACCTGCATCATATATGGATGGGACTATAGCAAGAAACCCTTCTATGTTGCCCCAGCCATGTGCACATCAATGTGGAGAGATGGACGAACACAACATTATCTGGAGTCCATAACTCAGAAATATGGGATGTCAGTGATCAAGCCTCTAAGTTCCAGTGGGCAAATGGCTGATATATCCAGAATCATCTTGACTGTAAAACAATATTTCATTACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 ko01100 map00770 map01100
Pfam Domains
Protein Families
Flavoprotein

Protein Analysis

365

Amino Acids

41.49

Weight (kDa)

7.52

Isoelectric Point (pI)

35.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Flavoprotein PF02441 13 - 175 5.2e-15 Flavoprotein
Flavoprotein PF02441 192 - 361 3.9e-20 Flavoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 893
AciI CCGC 1 cut(s) 861
AclWI GGATC 1 cut(s) 336
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 129
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 4 cut(s) 55, 246, 555, 657
AfiI CCNNNNNNNGG 1 cut(s) 479
AflIII ACRYGT 1 cut(s) 338
AhlI ACTAGT 1 cut(s) 46
AjiI CACGTC 1 cut(s) 265
AleI CACNNNNGTG 1 cut(s) 716
AluBI AGCT 2 cut(s) 442, 605
AluI AGCT 2 cut(s) 442, 605
Alw21I GWGCWC 3 cut(s) 28, 783, 947
Alw26I GTCTC 2 cut(s) 155, 430
Alw44I GTGCAC 2 cut(s) 24, 943
AlwI GGATC 1 cut(s) 336
AoxI GGCC 2 cut(s) 32, 469
ApaLI GTGCAC 2 cut(s) 24, 943
ApeKI GCWGC 3 cut(s) 587, 605, 633
ApoI RAATTY 1 cut(s) 74
Asp700I GAANNNNTTC 1 cut(s) 920
AspS9I GGNCC 2 cut(s) 32, 470
AsuHPI GGTGA 2 cut(s) 236, 782
BaeGI GKGCMC 3 cut(s) 28, 671, 947
Bbv12I GWGCWC 3 cut(s) 28, 783, 947
BbvI GCAGC 3 cut(s) 574, 592, 620
BccI CCATC 3 cut(s) 249, 894, 956
BceAI ACGGC 1 cut(s) 78
BclI TGATCA 1 cut(s) 1017
BcoDI GTCTC 2 cut(s) 155, 430
BcuI ACTAGT 1 cut(s) 46
BfaI CTAG 3 cut(s) 47, 252, 299
BfmI CTRYAG 3 cut(s) 312, 591, 907
BfuAI ACCTGC 1 cut(s) 893
BisI GCNGC 3 cut(s) 588, 606, 634
BlsI GCNGC 3 cut(s) 589, 607, 635
BmgBI CACGTC 1 cut(s) 265
BmgT120I GGNCC 2 cut(s) 32, 470
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 897
BmuI ACTGGG 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 1004
Bpu10I CCTNAGC 1 cut(s) 443
BpuEI CTTGAG 2 cut(s) 121, 477
BsaAI YACGTR 1 cut(s) 1095
BsaBI GATNNNNATC 1 cut(s) 873
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 4 cut(s) 35, 324, 572, 849
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bsc4I CCNNNNNNNGG 1 cut(s) 479
Bse1I ACTGG 2 cut(s) 174, 1035
Bse3DI GCAATG 2 cut(s) 492, 819
Bse8I GATNNNNATC 1 cut(s) 873
BseDI CCNNGG 4 cut(s) 35, 324, 572, 849
BseGI GGATG 5 cut(s) 602, 745, 874, 905, 1014
BseJI GATNNNNATC 1 cut(s) 873
BseLI CCNNNNNNNGG 1 cut(s) 479
BseMI GCAATG 2 cut(s) 492, 819
BseMII CTCAG 1 cut(s) 1010
BseNI ACTGG 2 cut(s) 174, 1035
BseRI GAGGAG 1 cut(s) 440
BseSI GKGCMC 3 cut(s) 28, 671, 947
BseXI GCAGC 3 cut(s) 574, 592, 620
BseYI CCCAGC 1 cut(s) 934
BsgI GTGCAG 1 cut(s) 311
BshFI GGCC 2 cut(s) 34, 471
BsiHKAI GWGCWC 3 cut(s) 28, 783, 947
BslFI GGGAC 1 cut(s) 917
BslI CCNNNNNNNGG 1 cut(s) 479
BsmAI GTCTC 2 cut(s) 155, 430
BsmFI GGGAC 1 cut(s) 917
BsnI GGCC 2 cut(s) 34, 471
Bso31I GGTCTC 1 cut(s) 155
Bsp1286I GDGCHC 4 cut(s) 28, 671, 783, 947
Bsp143I GATC 2 cut(s) 328, 1017
BspACI CCGC 1 cut(s) 861
BspANI GGCC 2 cut(s) 34, 471
BspCNI CTCAG 1 cut(s) 1009
BspMI ACCTGC 1 cut(s) 893
BspPI GGATC 1 cut(s) 336
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 492, 819
BsrI ACTGG 2 cut(s) 174, 1035
BssECI CCNNGG 4 cut(s) 35, 324, 572, 849
BssMI GATC 2 cut(s) 328, 1017
BssT1I CCWWGG 2 cut(s) 324, 849
Bst4CI ACNGT 3 cut(s) 244, 702, 1075
BstAPI GCANNNNNTGC 1 cut(s) 23
BstBAI YACGTR 1 cut(s) 1095
BstC8I GCNNGC 1 cut(s) 783
BstDEI CTNAG 3 cut(s) 443, 996, 1028
BstDSI CCRYGG 1 cut(s) 572
BstF5I GGATG 5 cut(s) 602, 745, 874, 905, 1014
BstKTI GATC 2 cut(s) 331, 1020
BstMAI GTCTC 2 cut(s) 155, 430
BstMBI GATC 2 cut(s) 328, 1017
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 342
BstSFI CTRYAG 3 cut(s) 312, 591, 907
BstSLI GKGCMC 3 cut(s) 28, 671, 947
BstSNI TACGTA 1 cut(s) 1095
BstV1I GCAGC 3 cut(s) 574, 592, 620
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BsuRI GGCC 2 cut(s) 34, 471
BtgI CCRYGG 1 cut(s) 572
BtrI CACGTC 1 cut(s) 265
BtsCI GGATG 5 cut(s) 602, 745, 874, 905, 1014
BtsI GCAGTG 2 cut(s) 530, 669
BtsIMutI CAGTG 7 cut(s) 181, 294, 530, 669, 729, 1020, 1042
BveI ACCTGC 1 cut(s) 893
Cac8I GCNNGC 1 cut(s) 783
Cfr13I GGNCC 2 cut(s) 32, 470
Csp6I GTAC 4 cut(s) 54, 245, 554, 656
CspCI CAANNNNNGTGG 2 cut(s) 561, 596
CviAII CATG 4 cut(s) 339, 391, 452, 940
CviQI GTAC 4 cut(s) 54, 245, 554, 656
DdeI CTNAG 3 cut(s) 443, 996, 1028
DpnI GATC 2 cut(s) 330, 1019
DpnII GATC 2 cut(s) 328, 1017
DraIII CACNNNGTG 1 cut(s) 23
Eco105I TACGTA 1 cut(s) 1095
Eco130I CCWWGG 2 cut(s) 324, 849
Eco31I GGTCTC 1 cut(s) 155
Eco57I CTGAAG 1 cut(s) 129
EcoT14I CCWWGG 2 cut(s) 324, 849
ErhI CCWWGG 2 cut(s) 324, 849
FaeI CATG 4 cut(s) 342, 394, 455, 943
FalI AAGNNNNNCTT 4 cut(s) 664, 696, 905, 937
FaqI GGGAC 1 cut(s) 917
FatI CATG 4 cut(s) 338, 390, 451, 939
FauNDI CATATG 1 cut(s) 432
FbaI TGATCA 1 cut(s) 1017
Fnu4HI GCNGC 3 cut(s) 588, 606, 634
FokI GGATG 5 cut(s) 609, 752, 881, 912, 1021
Fsp4HI GCNGC 3 cut(s) 588, 606, 634
FspBI CTAG 3 cut(s) 47, 252, 299
GluI GCNGC 3 cut(s) 588, 606, 634
GsaI CCCAGC 1 cut(s) 938
GsuI CTGGAG 1 cut(s) 1004
HaeIII GGCC 2 cut(s) 34, 471
Hin1II CATG 4 cut(s) 342, 394, 455, 943
HinfI GANTC 7 cut(s) 134, 227, 448, 677, 751, 986, 1062
HphI GGTGA 2 cut(s) 236, 782
Hpy166II GTNNAC 2 cut(s) 26, 945
Hpy188I TCNGA 2 cut(s) 106, 999
Hpy188III TCNNGA 6 cut(s) 252, 346, 500, 983, 1059, 1069
Hpy8I GTNNAC 2 cut(s) 26, 945
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 931
HpyCH4III ACNGT 3 cut(s) 244, 702, 1075
HpyCH4IV ACGT 3 cut(s) 264, 777, 1094
HpyCH4V TGCA 6 cut(s) 26, 163, 292, 485, 888, 945
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 3 cut(s) 443, 996, 1028
HpySE526I ACGT 3 cut(s) 264, 777, 1094
Hsp92II CATG 4 cut(s) 342, 394, 455, 943
Ksp22I TGATCA 1 cut(s) 1017
Kzo9I GATC 2 cut(s) 328, 1017
LmnI GCTCC 3 cut(s) 283, 427, 829
Lsp1109I GCAGC 3 cut(s) 574, 592, 620
LweI GCATC 1 cut(s) 897
MaeI CTAG 3 cut(s) 47, 252, 299
MaeII ACGT 3 cut(s) 264, 777, 1094
MaeIII GTNAC 6 cut(s) 42, 176, 188, 334, 410, 770
MalI GATC 2 cut(s) 330, 1019
MboI GATC 2 cut(s) 328, 1017
MboII GAAGA 1 cut(s) 135
MfeI CAATTG 1 cut(s) 209
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 4 cut(s) 28, 671, 783, 947
MluCI AATT 4 cut(s) 74, 168, 209, 813
MlyI GAGTC 3 cut(s) 128, 686, 995
MnlI CCTC 9 cut(s) 30, 61, 93, 109, 418, 646, 730, 761, 1035
MroXI GAANNNNTTC 1 cut(s) 920
MseI TTAA 1 cut(s) 747
MslI CAYNNNNRTG 4 cut(s) 716, 795, 950, 952
MunI CAATTG 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeI CATATG 1 cut(s) 432
NdeII GATC 2 cut(s) 328, 1017
NlaIII CATG 4 cut(s) 342, 394, 455, 943
NmeAIII GCCGAG 1 cut(s) 60
NmuCI GTSAC 3 cut(s) 176, 334, 770
NspI RCATGY 1 cut(s) 342
OliI CACNNNNGTG 1 cut(s) 716
PciI ACATGT 1 cut(s) 338
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 920
PfeI GAWTC 4 cut(s) 227, 448, 751, 1062
PkrI GCNGC 3 cut(s) 589, 607, 635
PleI GAGTC 3 cut(s) 128, 685, 994
PpsI GAGTC 3 cut(s) 128, 685, 994
Ppu21I YACGTR 1 cut(s) 1095
PscI ACATGT 1 cut(s) 338
PspFI CCCAGC 1 cut(s) 934
PspPI GGNCC 2 cut(s) 32, 470
PsuI RGATCY 1 cut(s) 328
RsaI GTAC 4 cut(s) 55, 246, 555, 657
RsaNI GTAC 4 cut(s) 54, 245, 554, 656
RseI CAYNNNNRTG 4 cut(s) 716, 795, 950, 952
SaqAI TTAA 1 cut(s) 747
SatI GCNGC 3 cut(s) 588, 606, 634
Sau3AI GATC 2 cut(s) 328, 1017
Sau96I GGNCC 2 cut(s) 32, 470
SchI GAGTC 3 cut(s) 128, 686, 995
SduI GDGCHC 4 cut(s) 28, 671, 783, 947
SfaNI GCATC 1 cut(s) 897
SfcI CTRYAG 3 cut(s) 312, 591, 907
SmiMI CAYNNNNRTG 4 cut(s) 716, 795, 950, 952
SmlI CTYRAG 2 cut(s) 136, 492
SmoI CTYRAG 2 cut(s) 136, 492
SnaBI TACGTA 1 cut(s) 1095
SpeI ACTAGT 1 cut(s) 46
Sse9I AATT 4 cut(s) 74, 168, 209, 813
SsiI CCGC 1 cut(s) 861
SspI AATATT 1 cut(s) 1085
SspMI CTAG 3 cut(s) 47, 252, 299
StyI CCWWGG 2 cut(s) 324, 849
TaaI ACNGT 3 cut(s) 244, 702, 1075
TaiI ACGT 3 cut(s) 267, 780, 1097
TasI AATT 4 cut(s) 74, 168, 209, 813
TatI WGTACW 1 cut(s) 244
TfiI GAWTC 4 cut(s) 227, 448, 751, 1062
Tru1I TTAA 1 cut(s) 747
Tru9I TTAA 1 cut(s) 747
TscAI CASTG 7 cut(s) 181, 294, 530, 669, 736, 1020, 1042
TseFI GTSAC 3 cut(s) 176, 334, 770
TseI GCWGC 3 cut(s) 587, 605, 633
Tsp45I GTSAC 3 cut(s) 176, 334, 770
TspDTI ATGAA 4 cut(s) 407, 607, 779, 1078
TspGWI ACGGA 1 cut(s) 589
TspRI CASTG 7 cut(s) 181, 294, 530, 669, 736, 1020, 1042
VneI GTGCAC 2 cut(s) 24, 943
XapI RAATTY 1 cut(s) 74
XbaI TCTAGA 1 cut(s) 251
XceI RCATGY 1 cut(s) 342
XcmI CCANNNNNNNNNTGG 1 cut(s) 1042
XmnI GAANNNNTTC 1 cut(s) 920
XspI CTAG 3 cut(s) 47, 252, 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.