Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Reverse (-)

41455289 .. 41456768

Gene Structure 1480 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025033

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCCGGAAGCGTAACCCGTGTTCACAGAAAACCCCGGATTGTTCTCGGTGCTTGCGGGTGTGCCGCTGCACTGGATTTTCCGAGATTGTGCCGAACTTTTCTTAATTGGGCAGAAGTAAAAGCTGTAGGCACACCCGACGGTTTCAAATACGTTGAACACGTAGCGATGCCAGTGGGGGTAAGTTTACTCATTAAGGATGATTGGAAAAATTTCCATGACCCTGTGCTTCATAGGCATCTTGCTGCTTGGGCTGATGCATTAGTCATTGCTCCATTGTCAGCAAACACTCTAAGCAAGATTGATGCAGGTCTTTGTGACAACCTTCTCACTGATGTTGTACGTGCATGGGACTGTGGAAAACCGTTATTTGTTGCGCCGGCAATGACCTACATGACATGGAAAAATACCATCACAAAGAAGTCTATAGAGTCAATTCGACAACATGGTATCAAAGTGATTGGACCGGCGGAAAGTGGTGGAATGGCTGAAATATATTCCATTGTTGATAAGGCGCCAATGCAAGGGTATGTCTCCCCTGGATTTGGTAGGCTTCCCACTCTTAACTTTAGTCACCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0042538 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

194

Amino Acids

21.04

Weight (kDa)

9.01

Isoelectric Point (pI)

20.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavoprotein	PF02441	13 - 172	6e-21	Flavoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	299
AccB1I	GGYRCC	1 cut(s)	514
AciI	CCGC	3 cut(s)	57, 66, 470
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	211
AcyI	GRCGYC	1 cut(s)	515
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	2 cut(s)	524, 545
AflIII	ACRYGT	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	148, 158
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	538
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	68, 245
ApoI	RAATTY	1 cut(s)	211
Asp700I	GAANNNNTTC	1 cut(s)	212
AspLEI	GCGC	2 cut(s)	379, 517
AspS9I	GGNCC	1 cut(s)	464
AsuC2I	CCSGG	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	566
AvaII	GGWCC	1 cut(s)	464
BanI	GGYRCC	1 cut(s)	514
BbvI	GCAGC	2 cut(s)	55, 232
BccI	CCATC	1 cut(s)	419
BciT130I	CCWGG	1 cut(s)	540
BcnI	CCSGG	1 cut(s)	37
BcoDI	GTCTC	1 cut(s)	538
BfaI	CTAG	1 cut(s)	580
BfmI	CTRYAG	2 cut(s)	126, 426
BfoI	RGCGCY	1 cut(s)	518
BfuAI	ACCTGC	1 cut(s)	299
BisI	GCNGC	3 cut(s)	66, 69, 246
BlsI	GCNGC	3 cut(s)	67, 70, 247
Bme1390I	CCNGG	2 cut(s)	37, 540
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	516
BmrFI	CCNGG	2 cut(s)	37, 540
BmsI	GCATC	4 cut(s)	159, 247, 247, 295
BpuMI	CCSGG	1 cut(s)	37
BsaAI	YACGTR	2 cut(s)	163, 344
BsaHI	GRCGYC	1 cut(s)	515
BsaJI	CCNNGG	2 cut(s)	35, 538
Bsc4I	CCNNNNNNNGG	2 cut(s)	524, 545
Bse118I	RCCGGY	2 cut(s)	379, 466
Bse1I	ACTGG	2 cut(s)	78, 173
Bse3DI	GCAATG	2 cut(s)	267, 390
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	35, 538
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	2 cut(s)	524, 545
BseMI	GCAATG	2 cut(s)	267, 390
BseNI	ACTGG	2 cut(s)	78, 173
BseXI	GCAGC	2 cut(s)	55, 232
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	514
BsiSI	CCGG	4 cut(s)	6, 37, 380, 467
BslFI	GGGAC	1 cut(s)	365
BslI	CCNNNNNNNGG	2 cut(s)	524, 545
BsmAI	GTCTC	1 cut(s)	538
BsmFI	GGGAC	1 cut(s)	365
BsnI	GGCC	1 cut(s)	5
BspACI	CCGC	3 cut(s)	57, 66, 470
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	516
BspMI	ACCTGC	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	514
BsrDI	GCAATG	2 cut(s)	267, 390
BsrFI	RCCGGY	2 cut(s)	379, 466
BsrI	ACTGG	2 cut(s)	78, 173
BssAI	RCCGGY	2 cut(s)	379, 466
BssECI	CCNNGG	2 cut(s)	35, 538
BssNI	GRCGYC	1 cut(s)	515
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	3 cut(s)	143, 356, 366
BstACI	GRCGYC	1 cut(s)	515
BstBAI	YACGTR	2 cut(s)	163, 344
BstC8I	GCNNGC	2 cut(s)	55, 381
BstDEI	CTNAG	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	205
BstH2I	RGCGCY	1 cut(s)	518
BstHHI	GCGC	2 cut(s)	379, 517
BstMAI	GTCTC	1 cut(s)	538
BstMWI	GCNNNNNNNGC	2 cut(s)	235, 251
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	2 cut(s)	35, 538
BstSFI	CTRYAG	2 cut(s)	126, 426
BstV1I	GCAGC	2 cut(s)	55, 232
BsuRI	GGCC	1 cut(s)	5
BtgZI	GCGATG	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	205
BtsIMutI	CAGTG	3 cut(s)	71, 180, 330
BveI	ACCTGC	1 cut(s)	299
Cac8I	GCNNGC	2 cut(s)	55, 381
CfoI	GCGC	2 cut(s)	379, 517
Cfr10I	RCCGGY	2 cut(s)	379, 466
Cfr13I	GGNCC	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	341
CviAII	CATG	5 cut(s)	218, 348, 394, 399, 446
CviJI	RGCY	5 cut(s)	5, 125, 254, 488, 553
CviKI_1	RGCY	5 cut(s)	5, 125, 254, 488, 553
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	1 cut(s)	293
DinI	GGCGCC	1 cut(s)	516
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	485
Eco47I	GGWCC	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	538
EcoT22I	ATGCAT	1 cut(s)	262
EgeI	GGCGCC	1 cut(s)	516
EheI	GGCGCC	1 cut(s)	516
FaeI	CATG	5 cut(s)	221, 351, 397, 402, 449
FaiI	YATR	9 cut(s)	219, 234, 349, 395, 400, 428, 447, 496, 531
FaqI	GGGAC	1 cut(s)	365
FatI	CATG	5 cut(s)	217, 347, 393, 398, 445
FauI	CCCGC	1 cut(s)	50
Fnu4HI	GCNGC	3 cut(s)	66, 69, 246
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	3 cut(s)	66, 69, 246
FspBI	CTAG	1 cut(s)	580
GlaI	GCGC	2 cut(s)	378, 516
GluI	GCNGC	3 cut(s)	66, 69, 246
HaeII	RGCGCY	1 cut(s)	518
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	4 cut(s)	6, 37, 380, 467
HhaI	GCGC	2 cut(s)	379, 517
Hin1I	GRCGYC	1 cut(s)	515
Hin1II	CATG	5 cut(s)	221, 351, 397, 402, 449
Hin6I	GCGC	2 cut(s)	377, 515
HinP1I	GCGC	2 cut(s)	377, 515
HinfI	GANTC	1 cut(s)	431
HpaII	CCGG	4 cut(s)	6, 37, 380, 467
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	2 cut(s)	25, 188
Hpy188I	TCNGA	1 cut(s)	84
Hpy8I	GTNNAC	2 cut(s)	25, 188
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	3 cut(s)	143, 356, 366
HpyCH4IV	ACGT	3 cut(s)	153, 162, 343
HpyCH4V	TGCA	5 cut(s)	71, 260, 308, 347, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	235, 251
HpyF3I	CTNAG	1 cut(s)	293
HpySE526I	ACGT	3 cut(s)	153, 162, 343
Hsp92I	GRCGYC	1 cut(s)	515
Hsp92II	CATG	5 cut(s)	221, 351, 397, 402, 449
HspAI	GCGC	2 cut(s)	377, 515
KasI	GGCGCC	1 cut(s)	514
KroI	GCCGGC	1 cut(s)	379
KroNI	GCCGGC	1 cut(s)	381
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	2 cut(s)	55, 232
LweI	GCATC	4 cut(s)	159, 247, 247, 295
MaeI	CTAG	1 cut(s)	580
MaeII	ACGT	3 cut(s)	153, 162, 343
MaeIII	GTNAC	3 cut(s)	13, 317, 572
MluCI	AATT	3 cut(s)	106, 211, 435
Mly113I	GGCGCC	1 cut(s)	515
MlyI	GAGTC	1 cut(s)	440
Mph1103I	ATGCAT	1 cut(s)	262
MroNI	GCCGGC	1 cut(s)	379
MroXI	GAANNNNTTC	1 cut(s)	212
MseI	TTAA	3 cut(s)	105, 195, 564
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	4 cut(s)	6, 37, 380, 467
MspR9I	CCNGG	2 cut(s)	37, 540
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	2 cut(s)	235, 251
NaeI	GCCGGC	1 cut(s)	381
NarI	GGCGCC	1 cut(s)	515
NciI	CCSGG	1 cut(s)	37
NgoMIV	GCCGGC	1 cut(s)	379
NlaIII	CATG	5 cut(s)	221, 351, 397, 402, 449
NlaIV	GGNNCC	1 cut(s)	516
NmuCI	GTSAC	2 cut(s)	317, 572
NsiI	ATGCAT	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PdiI	GCCGGC	1 cut(s)	381
PdmI	GAANNNNTTC	1 cut(s)	212
PkrI	GCNGC	3 cut(s)	67, 70, 247
PleI	GAGTC	1 cut(s)	439
PluTI	GGCGCC	1 cut(s)	518
PpsI	GAGTC	1 cut(s)	439
Ppu21I	YACGTR	2 cut(s)	163, 344
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	1 cut(s)	516
PspPI	GGNCC	1 cut(s)	464
PsrI	GAACNNNNNNTAC	1 cut(s)	38
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
SaqAI	TTAA	3 cut(s)	105, 195, 564
SatI	GCNGC	3 cut(s)	66, 69, 246
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	2 cut(s)	37, 540
SetI	ASST	7 cut(s)	127, 156, 165, 313, 327, 346, 392
SfaNI	GCATC	4 cut(s)	159, 247, 247, 295
SfcI	CTRYAG	2 cut(s)	126, 426
SfoI	GGCGCC	1 cut(s)	516
SinI	GGWCC	1 cut(s)	464
Sse9I	AATT	3 cut(s)	106, 211, 435
SsiI	CCGC	3 cut(s)	57, 66, 470
SspDI	GGCGCC	1 cut(s)	514
SspMI	CTAG	1 cut(s)	580
StyD4I	CCNGG	2 cut(s)	35, 538
TaaI	ACNGT	3 cut(s)	143, 356, 366
TaiI	ACGT	3 cut(s)	156, 165, 346
TaqI	TCGA	1 cut(s)	439
TasI	AATT	3 cut(s)	106, 211, 435
TauI	GCSGC	1 cut(s)	68
Tru1I	TTAA	3 cut(s)	105, 195, 564
Tru9I	TTAA	3 cut(s)	105, 195, 564
TscAI	CASTG	3 cut(s)	78, 180, 337
TseFI	GTSAC	2 cut(s)	317, 572
TseI	GCWGC	2 cut(s)	68, 245
Tsp45I	GTSAC	2 cut(s)	317, 572
TspDTI	ATGAA	1 cut(s)	221
TspRI	CASTG	3 cut(s)	78, 180, 337
VpaK11BI	GGWCC	1 cut(s)	464
XapI	RAATTY	1 cut(s)	211
XmnI	GAANNNNTTC	1 cut(s)	212
XspI	CTAG	1 cut(s)	580
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.