Rh3BG102600

Flavoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001212
Physical Location & Seq
Forward (+)
8229365 .. 8233211
3847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG102600.1

Sequence Viewer

Length: 972 bp
ATGTTTCACGGTGGAATCTGTCGGAGAAAGTTCAATTTTAGTAAGGGTATGCTTTCATATCAGGCACAAGGTGCACAAGGGCCGAGGGTGTTACTAGTTTGTACCCGAAGTGTAGAGGCAAAATTTTTCCCTCATCTTTGCCGTCATTTCTCTGAATGGGCAGAGGTAAAGGCAGTTTTGGACTCAAGTTCTTCAGGTCTCATTGACTTGCAATCAATTCCCAGTGACATACCTTGTTACGACGAAAAATACGAGCAATTGTGGAGATTTGGTGATTCCTTGACCCATACTGTACTCTCTAGATGGGCTGACGTGATTGTTATTGCTCCATTGTCAGTGCAGACACTAGGCAAGATTTCTGTAGGGTTGTCCAAGGATCTCGTCACATGTATCGTGAAAGAATGGGATTATAGAAAGCCCTTTTTTGTTGCCCCTGCCATGAATAACCGAATGTGGAGCAACTTGTTTATAGAGGAGCATATGAGACAGCTTAGGAATCATGGGATTAGGGTCGTTGGCCCTAATAATGGTGCAATGGCTCAAGTTCCTGAAATCATTTCTATTGTAAGACAGTGTTTTTGGGCAGTAGTTCCAAGATTAGTACCTTACATCAGTAAGCCACGGATTTTGGTGGCTGCTACAGGATGTATAGCTGCGTTTGATTTCATCAAAATATGTCGCTGCTTTTCACAATGGGGAGAGGTACGAGCACTGGGCACAAGAGAGTCTTTGGAGTATATTGATAGACAGTCATTTCCCACAGATGTGTGGTTTTACACTGATGAGGATGAGTTTAAGATTCACAATATCATTAGAGGTGACAACGTGCTCGCCATTCATCTCTGTGATTGGGCTGATGTAATTGTCATTGCTCCTTTGTCAGCAAACACACTATCCAAGGCAAGGTGGAATATGGTTGTTGCAGGAACAAAAGTAGGCAATATGTTGAAGAGAAGTTTCATTATAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 ko01100 map00770 map01100
Pfam Domains
Protein Families
Flavoprotein

Protein Analysis

323

Amino Acids

36.71

Weight (kDa)

8.9

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Flavoprotein PF02441 29 - 191 2.6e-14 Flavoprotein
Flavoprotein PF02441 208 - 300 2.5e-09 Flavoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 965
AclWI GGATC 1 cut(s) 384
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 177
AdeI CACNNNGTG 1 cut(s) 71
AfaI GTAC 4 cut(s) 103, 294, 603, 705
AfiI CCNNNNNNNGG 2 cut(s) 527, 903
AflIII ACRYGT 1 cut(s) 386
AgsI TTSAA 2 cut(s) 34, 949
AhlI ACTAGT 1 cut(s) 94
AjiI CACGTC 1 cut(s) 313
AleI CACNNNNGTG 1 cut(s) 764
AluBI AGCT 2 cut(s) 490, 653
AluI AGCT 2 cut(s) 490, 653
Alw21I GWGCWC 3 cut(s) 76, 712, 831
Alw26I GTCTC 2 cut(s) 203, 478
Alw44I GTGCAC 1 cut(s) 72
AlwI GGATC 1 cut(s) 384
AoxI GGCC 2 cut(s) 80, 517
ApaLI GTGCAC 1 cut(s) 72
ApeKI GCWGC 3 cut(s) 635, 653, 681
ApoI RAATTY 1 cut(s) 122
ArsI GACNNNNNNTTYG 2 cut(s) 561, 593
AspS9I GGNCC 2 cut(s) 80, 518
AsuHPI GGTGA 2 cut(s) 284, 830
BaeGI GKGCMC 2 cut(s) 76, 719
Bbv12I GWGCWC 3 cut(s) 76, 712, 831
BbvI GCAGC 3 cut(s) 622, 640, 668
BccI CCATC 1 cut(s) 297
BceAI ACGGC 1 cut(s) 126
BcoDI GTCTC 2 cut(s) 203, 478
BcuI ACTAGT 1 cut(s) 94
BfaI CTAG 3 cut(s) 95, 300, 347
BfmI CTRYAG 2 cut(s) 360, 639
BisI GCNGC 3 cut(s) 636, 654, 682
BlsI GCNGC 3 cut(s) 637, 655, 683
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 2 cut(s) 80, 518
BmrI ACTGGG 2 cut(s) 216, 722
BmuI ACTGGG 2 cut(s) 216, 722
Bpu10I CCTNAGC 1 cut(s) 491
BpuEI CTTGAG 2 cut(s) 169, 525
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 4 cut(s) 83, 372, 620, 897
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 2 cut(s) 527, 903
Bse1I ACTGG 2 cut(s) 222, 717
Bse3DI GCAATG 2 cut(s) 540, 867
BseDI CCNNGG 4 cut(s) 83, 372, 620, 897
BseGI GGATG 2 cut(s) 650, 793
BseLI CCNNNNNNNGG 2 cut(s) 527, 903
BseMI GCAATG 2 cut(s) 540, 867
BseNI ACTGG 2 cut(s) 222, 717
BseRI GAGGAG 1 cut(s) 488
BseSI GKGCMC 2 cut(s) 76, 719
BseXI GCAGC 3 cut(s) 622, 640, 668
BsgI GTGCAG 1 cut(s) 359
BshFI GGCC 2 cut(s) 82, 519
BsiHKAI GWGCWC 3 cut(s) 76, 712, 831
BslI CCNNNNNNNGG 2 cut(s) 527, 903
BsmAI GTCTC 2 cut(s) 203, 478
BsnI GGCC 2 cut(s) 82, 519
Bso31I GGTCTC 1 cut(s) 203
Bsp1286I GDGCHC 4 cut(s) 76, 712, 719, 831
Bsp143I GATC 1 cut(s) 376
BspANI GGCC 2 cut(s) 82, 519
BspPI GGATC 1 cut(s) 384
BspTNI GGTCTC 1 cut(s) 203
BsrDI GCAATG 2 cut(s) 540, 867
BsrI ACTGG 2 cut(s) 222, 717
BssECI CCNNGG 4 cut(s) 83, 372, 620, 897
BssMI GATC 1 cut(s) 376
BssT1I CCWWGG 2 cut(s) 372, 897
Bst4CI ACNGT 4 cut(s) 11, 292, 573, 750
Bst6I CTCTTC 1 cut(s) 944
BstAPI GCANNNNNTGC 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 831
BstDEI CTNAG 1 cut(s) 491
BstDSI CCRYGG 1 cut(s) 620
BstF5I GGATG 2 cut(s) 650, 793
BstKTI GATC 1 cut(s) 379
BstMAI GTCTC 2 cut(s) 203, 478
BstMBI GATC 1 cut(s) 376
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNSI RCATGY 1 cut(s) 390
BstSFI CTRYAG 2 cut(s) 360, 639
BstSLI GKGCMC 2 cut(s) 76, 719
BstV1I GCAGC 3 cut(s) 622, 640, 668
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
BsuRI GGCC 2 cut(s) 82, 519
BtgI CCRYGG 1 cut(s) 620
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 2 cut(s) 650, 793
BtsIMutI CAGTG 5 cut(s) 229, 342, 578, 710, 777
Cac8I GCNNGC 1 cut(s) 831
Cfr13I GGNCC 2 cut(s) 80, 518
Csp6I GTAC 4 cut(s) 102, 293, 602, 704
CspCI CAANNNNNGTGG 2 cut(s) 609, 644
CviAII CATG 3 cut(s) 387, 439, 500
CviQI GTAC 4 cut(s) 102, 293, 602, 704
DdeI CTNAG 1 cut(s) 491
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
DraIII CACNNNGTG 1 cut(s) 71
Eam1104I CTCTTC 1 cut(s) 944
EarI CTCTTC 1 cut(s) 944
Eco130I CCWWGG 2 cut(s) 372, 897
Eco31I GGTCTC 1 cut(s) 203
Eco57I CTGAAG 1 cut(s) 177
EcoT14I CCWWGG 2 cut(s) 372, 897
ErhI CCWWGG 2 cut(s) 372, 897
FaeI CATG 3 cut(s) 390, 442, 503
FalI AAGNNNNNCTT 2 cut(s) 712, 744
FatI CATG 3 cut(s) 386, 438, 499
FauNDI CATATG 1 cut(s) 480
Fnu4HI GCNGC 3 cut(s) 636, 654, 682
FokI GGATG 2 cut(s) 657, 800
Fsp4HI GCNGC 3 cut(s) 636, 654, 682
FspBI CTAG 3 cut(s) 95, 300, 347
GluI GCNGC 3 cut(s) 636, 654, 682
HaeIII GGCC 2 cut(s) 82, 519
Hin1II CATG 3 cut(s) 390, 442, 503
HinfI GANTC 6 cut(s) 15, 182, 275, 496, 725, 799
HphI GGTGA 2 cut(s) 284, 830
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 24, 154
Hpy188III TCNNGA 3 cut(s) 300, 394, 548
Hpy8I GTNNAC 1 cut(s) 74
Hpy99I CGWCG 1 cut(s) 245
HpyCH4III ACNGT 4 cut(s) 11, 292, 573, 750
HpyCH4IV ACGT 2 cut(s) 312, 825
HpyCH4V TGCA 5 cut(s) 74, 211, 340, 533, 923
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 491
HpySE526I ACGT 2 cut(s) 312, 825
Hsp92II CATG 3 cut(s) 390, 442, 503
Kzo9I GATC 1 cut(s) 376
LmnI GCTCC 4 cut(s) 331, 456, 475, 877
LpnPI CCDG 8 cut(s) 47, 180, 235, 447, 561, 627, 698, 909
Lsp1109I GCAGC 3 cut(s) 622, 640, 668
MaeI CTAG 3 cut(s) 95, 300, 347
MaeII ACGT 2 cut(s) 312, 825
MaeIII GTNAC 5 cut(s) 90, 224, 236, 382, 818
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 2 cut(s) 183, 961
MfeI CAATTG 1 cut(s) 257
MflI RGATCY 1 cut(s) 376
MhlI GDGCHC 4 cut(s) 76, 712, 719, 831
MluCI AATT 5 cut(s) 34, 122, 216, 257, 861
MlyI GAGTC 2 cut(s) 176, 734
MnlI CCTC 8 cut(s) 78, 109, 141, 157, 466, 694, 778, 809
MseI TTAA 2 cut(s) 795, 970
MslI CAYNNNNRTG 2 cut(s) 764, 843
MunI CAATTG 1 cut(s) 257
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeI CATATG 1 cut(s) 480
NdeII GATC 1 cut(s) 376
NlaIII CATG 3 cut(s) 390, 442, 503
NmeAIII GCCGAG 1 cut(s) 108
NmuCI GTSAC 3 cut(s) 224, 382, 818
NspI RCATGY 1 cut(s) 390
OliI CACNNNNGTG 1 cut(s) 764
PciI ACATGT 1 cut(s) 386
PcsI WCGNNNNNNNCGW 1 cut(s) 249
PfeI GAWTC 4 cut(s) 15, 275, 496, 799
PkrI GCNGC 3 cut(s) 637, 655, 683
PleI GAGTC 2 cut(s) 176, 733
PpsI GAGTC 2 cut(s) 176, 733
PscI ACATGT 1 cut(s) 386
PsiI TTATAA 1 cut(s) 965
PspPI GGNCC 2 cut(s) 80, 518
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 4 cut(s) 103, 294, 603, 705
RsaNI GTAC 4 cut(s) 102, 293, 602, 704
RseI CAYNNNNRTG 2 cut(s) 764, 843
SaqAI TTAA 2 cut(s) 795, 970
SatI GCNGC 3 cut(s) 636, 654, 682
Sau3AI GATC 1 cut(s) 376
Sau96I GGNCC 2 cut(s) 80, 518
SchI GAGTC 2 cut(s) 176, 734
SduI GDGCHC 4 cut(s) 76, 712, 719, 831
SfcI CTRYAG 2 cut(s) 360, 639
SmiMI CAYNNNNRTG 2 cut(s) 764, 843
SmlI CTYRAG 2 cut(s) 184, 540
SmoI CTYRAG 2 cut(s) 184, 540
SpeI ACTAGT 1 cut(s) 94
Sse9I AATT 5 cut(s) 34, 122, 216, 257, 861
SspMI CTAG 3 cut(s) 95, 300, 347
StyI CCWWGG 2 cut(s) 372, 897
TaaI ACNGT 4 cut(s) 11, 292, 573, 750
TaiI ACGT 2 cut(s) 315, 828
TasI AATT 5 cut(s) 34, 122, 216, 257, 861
TatI WGTACW 1 cut(s) 292
TfiI GAWTC 4 cut(s) 15, 275, 496, 799
Tru1I TTAA 2 cut(s) 795, 970
Tru9I TTAA 2 cut(s) 795, 970
TscAI CASTG 5 cut(s) 229, 342, 578, 717, 784
TseFI GTSAC 3 cut(s) 224, 382, 818
TseI GCWGC 3 cut(s) 635, 653, 681
Tsp45I GTSAC 3 cut(s) 224, 382, 818
TspDTI ATGAA 5 cut(s) 45, 455, 655, 827, 949
TspGWI ACGGA 1 cut(s) 637
TspRI CASTG 5 cut(s) 229, 342, 578, 717, 784
VneI GTGCAC 1 cut(s) 72
XapI RAATTY 1 cut(s) 122
XbaI TCTAGA 1 cut(s) 299
XceI RCATGY 1 cut(s) 390
XspI CTAG 3 cut(s) 95, 300, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.