Rmu_sc0000449.1_g000021

Flavoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000449.1
OG0001212
Physical Location & Seq
Reverse (-)
83432 .. 88106
4675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000449.1_g000021.1.cds

Sequence Viewer

Length: 684 bp
atgaataaccgaatgtggagcaacttgtttatagaggagcatatgagacagcttaggaatcatgggattagggtcgttggccctaataatggtgcaatggctcaagttcctgaaatcatttctattgtaagacagtgtttttgggcagtagttccaagattagtaccttacatcagtaagccacggattttggtggctgctacaggatgtatagctgcgtttgatttcatcaaaatatgtcgctgcttttcacaatggggagaggtacgagcactgggcacaagagagtctttggagtatattgatagacagtcatttcccacagatgtgtggttttacactgatgaggatgagtttaagattcacaatatcattagaggcgacaacgtgctcgccattcatctctgtgattgggctgatgtaattgtcattgctcctttgtcagcaaacacactatccaaggattgtgccaaagtatccttcgaatccacaggcttcccacgcatcttagctggggccatggcctataacaccagagtgccactttctatggcgttggcaccttgcctacctctgtgtagggtggtgctacgtcctcttatagggacgtccttccttgcagacatttttgcagcaaatgtgtgtgatctcgtcacttttaataaggatcgagatgagacatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 ko01100 map00770 map01100
Pfam Domains
Protein Families
Flavoprotein

Protein Analysis

227

Amino Acids

25.58

Weight (kDa)

6.88

Isoelectric Point (pI)

31.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 611
AccB1I GGYRCC 1 cut(s) 559
AclWI GGATC 1 cut(s) 675
AcyI GRCGYC 1 cut(s) 608
AfaI GTAC 2 cut(s) 165, 267
AfiI CCNNNNNNNGG 2 cut(s) 89, 602
AjuI GAANNNNNNNTTGG 2 cut(s) 464, 496
AleI CACNNNNGTG 2 cut(s) 326, 536
AluBI AGCT 3 cut(s) 52, 215, 512
AluI AGCT 3 cut(s) 52, 215, 512
Alw21I GWGCWC 2 cut(s) 274, 393
Alw26I GTCTC 2 cut(s) 40, 671
AlwI GGATC 1 cut(s) 675
AoxI GGCC 3 cut(s) 79, 516, 522
ApeKI GCWGC 4 cut(s) 197, 215, 243, 632
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
AspS9I GGNCC 2 cut(s) 80, 516
AsuII TTCGAA 1 cut(s) 483
BaeGI GKGCMC 1 cut(s) 281
BanI GGYRCC 1 cut(s) 559
Bbv12I GWGCWC 2 cut(s) 274, 393
BbvI GCAGC 4 cut(s) 184, 202, 230, 644
BciVI GTATCC 1 cut(s) 487
BcoDI GTCTC 2 cut(s) 40, 671
BfmI CTRYAG 1 cut(s) 201
BfuI GTATCC 1 cut(s) 487
BisI GCNGC 4 cut(s) 198, 216, 244, 633
BlsI GCNGC 4 cut(s) 199, 217, 245, 634
BmgT120I GGNCC 2 cut(s) 80, 516
BmiI GGNNCC 2 cut(s) 517, 561
BmrI ACTGGG 1 cut(s) 284
BmsI GCATC 1 cut(s) 513
BmuI ACTGGG 1 cut(s) 284
Bpu10I CCTNAGC 1 cut(s) 53
Bpu14I TTCGAA 1 cut(s) 483
BpuEI CTTGAG 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 608
BsaJI CCNNGG 3 cut(s) 182, 459, 519
Bsc4I CCNNNNNNNGG 2 cut(s) 89, 602
Bse1I ACTGG 1 cut(s) 279
Bse3DI GCAATG 2 cut(s) 102, 429
BseDI CCNNGG 3 cut(s) 182, 459, 519
BseGI GGATG 2 cut(s) 212, 355
BseLI CCNNNNNNNGG 2 cut(s) 89, 602
BseMI GCAATG 2 cut(s) 102, 429
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 281
BseXI GCAGC 4 cut(s) 184, 202, 230, 644
BseYI CCCAGC 1 cut(s) 512
BshFI GGCC 3 cut(s) 81, 518, 524
BshNI GGYRCC 1 cut(s) 559
BsiHKAI GWGCWC 2 cut(s) 274, 393
BslFI GGGAC 1 cut(s) 619
BslI CCNNNNNNNGG 2 cut(s) 89, 602
BsmAI GTCTC 2 cut(s) 40, 671
BsmFI GGGAC 1 cut(s) 619
BsnI GGCC 3 cut(s) 81, 518, 524
Bsp119I TTCGAA 1 cut(s) 483
Bsp1286I GDGCHC 3 cut(s) 274, 281, 393
Bsp143I GATC 2 cut(s) 646, 667
Bsp19I CCATGG 1 cut(s) 519
BspANI GGCC 3 cut(s) 81, 518, 524
BspLI GGNNCC 2 cut(s) 517, 561
BspPI GGATC 1 cut(s) 675
BspT104I TTCGAA 1 cut(s) 483
BspT107I GGYRCC 1 cut(s) 559
BsrDI GCAATG 2 cut(s) 102, 429
BsrI ACTGG 1 cut(s) 279
BssECI CCNNGG 3 cut(s) 182, 459, 519
BssMI GATC 2 cut(s) 646, 667
BssNI GRCGYC 1 cut(s) 608
BssT1I CCWWGG 2 cut(s) 459, 519
Bst4CI ACNGT 2 cut(s) 135, 312
BstACI GRCGYC 1 cut(s) 608
BstBI TTCGAA 1 cut(s) 483
BstC8I GCNNGC 1 cut(s) 393
BstDEI CTNAG 2 cut(s) 53, 508
BstDSI CCRYGG 2 cut(s) 182, 519
BstENI CCTNNNNNAGG 1 cut(s) 600
BstF5I GGATG 2 cut(s) 212, 355
BstKTI GATC 2 cut(s) 649, 670
BstMAI GTCTC 2 cut(s) 40, 671
BstMBI GATC 2 cut(s) 646, 667
BstMWI GCNNNNNNNGC 1 cut(s) 501
BstSFI CTRYAG 1 cut(s) 201
BstSLI GKGCMC 1 cut(s) 281
BstV1I GCAGC 4 cut(s) 184, 202, 230, 644
BsuI GTATCC 1 cut(s) 487
BsuRI GGCC 3 cut(s) 81, 518, 524
BtgI CCRYGG 2 cut(s) 182, 519
BtsCI GGATG 2 cut(s) 212, 355
BtsIMutI CAGTG 3 cut(s) 140, 272, 339
Cac8I GCNNGC 1 cut(s) 393
Cfr13I GGNCC 2 cut(s) 80, 516
Csp6I GTAC 2 cut(s) 164, 266
CspCI CAANNNNNGTGG 2 cut(s) 171, 206
CviAII CATG 2 cut(s) 62, 520
CviQI GTAC 2 cut(s) 164, 266
DdeI CTNAG 2 cut(s) 53, 508
DpnI GATC 2 cut(s) 648, 669
DpnII GATC 2 cut(s) 646, 667
Eco130I CCWWGG 2 cut(s) 459, 519
EcoNI CCTNNNNNAGG 1 cut(s) 600
EcoT14I CCWWGG 2 cut(s) 459, 519
ErhI CCWWGG 2 cut(s) 459, 519
FaeI CATG 2 cut(s) 65, 523
FalI AAGNNNNNCTT 2 cut(s) 274, 306
FaqI GGGAC 1 cut(s) 619
FatI CATG 2 cut(s) 61, 519
FauNDI CATATG 1 cut(s) 42
Fnu4HI GCNGC 4 cut(s) 198, 216, 244, 633
FokI GGATG 2 cut(s) 219, 362
Fsp4HI GCNGC 4 cut(s) 198, 216, 244, 633
GluI GCNGC 4 cut(s) 198, 216, 244, 633
GsaI CCCAGC 1 cut(s) 516
HaeIII GGCC 3 cut(s) 81, 518, 524
Hin1I GRCGYC 1 cut(s) 608
Hin1II CATG 2 cut(s) 65, 523
HinfI GANTC 4 cut(s) 58, 287, 361, 485
Hpy188III TCNNGA 2 cut(s) 110, 671
HpyAV CCTTC 2 cut(s) 490, 622
HpyCH4III ACNGT 2 cut(s) 135, 312
HpyCH4IV ACGT 3 cut(s) 387, 592, 608
HpyCH4V TGCA 3 cut(s) 95, 620, 632
HpyF10VI GCNNNNNNNGC 1 cut(s) 501
HpyF3I CTNAG 2 cut(s) 53, 508
HpySE526I ACGT 3 cut(s) 387, 592, 608
Hsp92I GRCGYC 1 cut(s) 608
Hsp92II CATG 2 cut(s) 65, 523
Kzo9I GATC 2 cut(s) 646, 667
LmnI GCTCC 3 cut(s) 18, 37, 439
LpnPI CCDG 6 cut(s) 123, 189, 260, 477, 498, 547
Lsp1109I GCAGC 4 cut(s) 184, 202, 230, 644
LweI GCATC 1 cut(s) 513
MaeII ACGT 3 cut(s) 387, 592, 608
MaeIII GTNAC 1 cut(s) 652
MalI GATC 2 cut(s) 648, 669
MboI GATC 2 cut(s) 646, 667
MhlI GDGCHC 3 cut(s) 274, 281, 393
MluCI AATT 1 cut(s) 423
MlyI GAGTC 1 cut(s) 296
MnlI CCTC 6 cut(s) 28, 256, 340, 371, 582, 606
MseI TTAA 2 cut(s) 357, 660
MslI CAYNNNNRTG 3 cut(s) 326, 405, 536
MwoI GCNNNNNNNGC 1 cut(s) 501
NcoI CCATGG 1 cut(s) 519
NdeI CATATG 1 cut(s) 42
NdeII GATC 2 cut(s) 646, 667
NlaIII CATG 2 cut(s) 65, 523
NlaIV GGNNCC 2 cut(s) 517, 561
NmuCI GTSAC 1 cut(s) 652
NspV TTCGAA 1 cut(s) 483
OliI CACNNNNGTG 2 cut(s) 326, 536
PfeI GAWTC 3 cut(s) 58, 361, 485
PkrI GCNGC 4 cut(s) 199, 217, 245, 634
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PspFI CCCAGC 1 cut(s) 512
PspN4I GGNNCC 2 cut(s) 517, 561
PspPI GGNCC 2 cut(s) 80, 516
RsaI GTAC 2 cut(s) 165, 267
RsaNI GTAC 2 cut(s) 164, 266
RseI CAYNNNNRTG 3 cut(s) 326, 405, 536
SaqAI TTAA 2 cut(s) 357, 660
SatI GCNGC 4 cut(s) 198, 216, 244, 633
Sau3AI GATC 2 cut(s) 646, 667
Sau96I GGNCC 2 cut(s) 80, 516
SchI GAGTC 1 cut(s) 296
SduI GDGCHC 3 cut(s) 274, 281, 393
SfaNI GCATC 1 cut(s) 513
SfcI CTRYAG 1 cut(s) 201
SfuI TTCGAA 1 cut(s) 483
SmiMI CAYNNNNRTG 3 cut(s) 326, 405, 536
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 1 cut(s) 423
StyI CCWWGG 2 cut(s) 459, 519
TaaI ACNGT 2 cut(s) 135, 312
TaiI ACGT 3 cut(s) 390, 595, 611
TaqI TCGA 2 cut(s) 483, 670
TasI AATT 1 cut(s) 423
TfiI GAWTC 3 cut(s) 58, 361, 485
Tru1I TTAA 2 cut(s) 357, 660
Tru9I TTAA 2 cut(s) 357, 660
TscAI CASTG 3 cut(s) 140, 279, 346
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 4 cut(s) 197, 215, 243, 632
Tsp45I GTSAC 1 cut(s) 652
TspDTI ATGAA 3 cut(s) 17, 217, 389
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 3 cut(s) 140, 279, 346
XagI CCTNNNNNAGG 1 cut(s) 600
ZraI GACGTC 1 cut(s) 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.