Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Reverse (-)

14002778 .. 14005516

Gene Structure 2739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G158000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCTGGCTCTGAACCTGAGAGTCCAGAAATGGAGCCAATACAAGCCAATCCTGCTCTGAGGAGGCCTCGGATTCTACTTGCTGCTAGCGGGAGTGTAGCGGCCATAAAGTTTGGCAACCTCTGCCATAGTTTTTCTGAATGGGCAGAAGTAAAAGCAGTTGCCACAAGAGCATCCTTGCATTTCATTGATAGGACATCACTTCCCAAGGATGTAATCCTGTACACCGATGAGGATGAGTGGTCCAGTTGGAACAAAATGGGTGATAGTGTGCTTCACATTGAGCTCCGCCGTTGGGCTGATATCTTGGTTATTGCCCCACTGTCAGCAAACACACTAGGCAAGATTGCTGGGGGATTGTGTGACAATCTACTCACCTGTGTTGTACGAGCATGGGACTACAGCAAGCCTTTCTTTGTTGCACCAGCCATGAACACGTTGATGTGGAAGAATCCCTTCACGGAGCGACATATCATGTCAATTGATGAACTTGGAGTGTCGCTCATCCCGCCTGTCACAAAGAGGCTGGCTTGTGGGGATTACGGAAATGGAGCAATGGCTGAACCTTCTTTGATTTATTCTACTGTAAGACTCTTTTTCGAGTCTCGAGTTCAACAAGGTGGCAGTGTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0042538 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

212

Amino Acids

23.28

Weight (kDa)

5.82

Isoelectric Point (pI)

59.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	90, 101, 289, 509
AcoI	YGGCCR	1 cut(s)	102
AfaI	GTAC	2 cut(s)	224, 387
AfiI	CCNNNNNNNGG	1 cut(s)	295
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	1 cut(s)	614
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	1 cut(s)	609
Ama87I	CYCGRG	1 cut(s)	606
AoxI	GGCC	2 cut(s)	65, 102
ApeKI	GCWGC	1 cut(s)	83
Asp700I	GAANNNNTTC	1 cut(s)	455
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	2 cut(s)	275, 367
AsuNHI	GCTAGC	1 cut(s)	86
AvaI	CYCGRG	1 cut(s)	606
AvaII	GGWCC	1 cut(s)	243
BanII	GRGCYC	1 cut(s)	288
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	609
BfaI	CTAG	2 cut(s)	87, 338
BfmI	CTRYAG	1 cut(s)	400
BisI	GCNGC	2 cut(s)	84, 102
BlsI	GCNGC	2 cut(s)	85, 103
Bme18I	GGWCC	1 cut(s)	243
BmeT110I	CYCGRG	1 cut(s)	606
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	1 cut(s)	36
BmsI	GCATC	1 cut(s)	182
BmtI	GCTAGC	1 cut(s)	90
BplI	GAGNNNNNCTC	4 cut(s)	52, 84, 486, 518
BsaJI	CCNNGG	2 cut(s)	68, 207
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	246
Bse3DI	GCAATG	1 cut(s)	561
BseDI	CCNNGG	2 cut(s)	68, 207
BseGI	GGATG	4 cut(s)	173, 217, 241, 504
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	2 cut(s)	9, 50
BseNI	ACTGG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	70
BseYI	CCCAGC	1 cut(s)	350
BshFI	GGCC	2 cut(s)	67, 104
BsiHKAI	GWGCWC	1 cut(s)	288
BsiHKCI	CYCGRG	1 cut(s)	606
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	609
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	2 cut(s)	67, 104
BsoBI	CYCGRG	1 cut(s)	606
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp1407I	TGTACA	1 cut(s)	222
BspACI	CCGC	4 cut(s)	90, 101, 289, 509
BspANI	GGCC	2 cut(s)	67, 104
BspCNI	CTCAG	2 cut(s)	10, 51
BspLI	GGNNCC	1 cut(s)	36
BspOI	GCTAGC	1 cut(s)	90
BsrDI	GCAATG	1 cut(s)	561
BsrGI	TGTACA	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	68, 207
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	324, 586
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstAUI	TGTACA	1 cut(s)	222
BstC8I	GCNNGC	3 cut(s)	88, 407, 528
BstDEI	CTNAG	2 cut(s)	18, 59
BstF5I	GGATG	4 cut(s)	173, 217, 241, 504
BstMAI	GTCTC	1 cut(s)	609
BstMWI	GCNNNNNNNGC	4 cut(s)	53, 123, 170, 508
BstSFI	CTRYAG	1 cut(s)	400
BstV1I	GCAGC	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	67, 104
BtsCI	GGATG	4 cut(s)	173, 217, 241, 504
BtsI	GCAGTG	1 cut(s)	631
BtsIMutI	CAGTG	2 cut(s)	320, 631
Cac8I	GCNNGC	3 cut(s)	88, 407, 528
Cfr13I	GGNCC	1 cut(s)	243
Csp6I	GTAC	2 cut(s)	223, 386
CviAII	CATG	3 cut(s)	393, 430, 475
CviQI	GTAC	2 cut(s)	223, 386
DdeI	CTNAG	2 cut(s)	18, 59
EaeI	YGGCCR	1 cut(s)	102
EciI	GGCGGA	1 cut(s)	278
Ecl136II	GAGCTC	1 cut(s)	286
Eco130I	CCWWGG	1 cut(s)	207
Eco147I	AGGCCT	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	304
Eco47I	GGWCC	1 cut(s)	243
Eco53kI	GAGCTC	1 cut(s)	286
Eco88I	CYCGRG	1 cut(s)	606
EcoICRI	GAGCTC	1 cut(s)	286
EcoRV	GATATC	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	207
EcoT38I	GRGCYC	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	3 cut(s)	396, 433, 478
FaiI	YATR	6 cut(s)	107, 129, 394, 431, 471, 476
FalI	AAGNNNNNCTT	4 cut(s)	398, 430, 440, 472
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	3 cut(s)	392, 429, 474
FauI	CCCGC	2 cut(s)	83, 516
Fnu4HI	GCNGC	2 cut(s)	84, 102
FokI	GGATG	4 cut(s)	160, 224, 248, 491
FriOI	GRGCYC	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	84, 102
FspBI	CTAG	2 cut(s)	87, 338
GluI	GCNGC	2 cut(s)	84, 102
GsaI	CCCAGC	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	67, 104
Hin1II	CATG	3 cut(s)	396, 433, 478
HinfI	GANTC	5 cut(s)	22, 73, 451, 591, 602
HphI	GGTGA	2 cut(s)	275, 367
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	4 cut(s)	13, 60, 72, 139
Hpy188III	TCNNGA	2 cut(s)	26, 606
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	2 cut(s)	466, 576
HpyCH4III	ACNGT	2 cut(s)	324, 586
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	2 cut(s)	181, 422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	53, 123, 170, 508
HpyF3I	CTNAG	2 cut(s)	18, 59
HpySE526I	ACGT	1 cut(s)	437
Hsp92II	CATG	3 cut(s)	396, 433, 478
LmnI	GCTCC	4 cut(s)	34, 291, 463, 551
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	2 cut(s)	87, 338
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	2 cut(s)	362, 514
MboII	GAAGA	1 cut(s)	460
MfeI	CAATTG	1 cut(s)	480
MhlI	GDGCHC	1 cut(s)	288
MluCI	AATT	1 cut(s)	480
MlyI	GAGTC	3 cut(s)	31, 585, 611
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	6 cut(s)	54, 57, 78, 131, 226, 516
MroXI	GAANNNNTTC	1 cut(s)	455
MslI	CAYNNNNRTG	1 cut(s)	440
MunI	CAATTG	1 cut(s)	480
MwoI	GCNNNNNNNGC	4 cut(s)	53, 123, 170, 508
NheI	GCTAGC	1 cut(s)	86
NlaIII	CATG	3 cut(s)	396, 433, 478
NlaIV	GGNNCC	1 cut(s)	36
NmuCI	GTSAC	2 cut(s)	362, 514
PaeR7I	CTCGAG	1 cut(s)	606
PceI	AGGCCT	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	455
PfeI	GAWTC	2 cut(s)	73, 451
PkrI	GCNGC	2 cut(s)	85, 103
PleI	GAGTC	3 cut(s)	30, 585, 610
PpsI	GAGTC	3 cut(s)	30, 585, 610
Psp124BI	GAGCTC	1 cut(s)	288
PspFI	CCCAGC	1 cut(s)	350
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	243
RsaI	GTAC	2 cut(s)	224, 387
RsaNI	GTAC	2 cut(s)	223, 386
RseI	CAYNNNNRTG	1 cut(s)	440
SacI	GAGCTC	1 cut(s)	288
SatI	GCNGC	2 cut(s)	84, 102
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	3 cut(s)	31, 585, 611
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	7 cut(s)	19, 123, 288, 380, 440, 568, 622
SfaNI	GCATC	1 cut(s)	182
SfcI	CTRYAG	1 cut(s)	400
Sfr274I	CTCGAG	1 cut(s)	606
SinI	GGWCC	1 cut(s)	243
SlaI	CTCGAG	1 cut(s)	606
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	1 cut(s)	606
SmoI	CTYRAG	1 cut(s)	606
Sse9I	AATT	1 cut(s)	480
SseBI	AGGCCT	1 cut(s)	67
SsiI	CCGC	4 cut(s)	90, 101, 289, 509
SspMI	CTAG	2 cut(s)	87, 338
SstI	GAGCTC	1 cut(s)	288
StuI	AGGCCT	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	2 cut(s)	324, 586
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	2 cut(s)	600, 607
TasI	AATT	1 cut(s)	480
TatI	WGTACW	1 cut(s)	222
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	2 cut(s)	73, 451
TscAI	CASTG	2 cut(s)	327, 631
TseFI	GTSAC	2 cut(s)	362, 514
TseI	GCWGC	1 cut(s)	83
Tsp45I	GTSAC	2 cut(s)	362, 514
TspDTI	ATGAA	3 cut(s)	175, 446, 501
TspGWI	ACGGA	2 cut(s)	476, 558
TspRI	CASTG	2 cut(s)	327, 631
VpaK11BI	GGWCC	1 cut(s)	243
XhoI	CTCGAG	1 cut(s)	606
XmnI	GAANNNNTTC	1 cut(s)	455
XspI	CTAG	2 cut(s)	87, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.