Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Reverse (-)

27387412 .. 27388747

Gene Structure 1336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0157000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAGAGGACTCTATGCTTTCAACACCATCAACCTAAACCAGAAACTCAGAAAACAAGCCCAGAATGAACCATTCAGTAAGCAAAACACAAAACAAGAAATTTGGCTCATCATTTTGTTTAGTATAAACACAAACTCACACACAAACGTGGCCAGCCCCAGTTCATCATACCCAGCAACCATCCTCATCCTCCTCAGCCAGATGCCCCACCTCTCCGACCCCAAAGTCATCGCCGCCATGACCCGCGCCGTCTCCGACGTCGCCCAGACCCACTCCGTCCTCAACGCCCTCGGCGACCGTCCCGACCACAACCTCCTCTCGCAACCACACCCTCAACGGCGATCCAAACTCTCCTTCATCACCCCCTCCGAAATCGCCGCCCGGATCAACAACTACAGCTTCGTGTCCTGCCTCGACTCCATCATCCAGCCTCCTAGAGTCCAAGTAGCAGCGTTTGCAGGGGGCGCACTGGAGCCAAACGACGTCGGAGCTGGTGTCGAGGACCATGTAGAGGTATTTAGGGGGAGTGCCGACGCCGATGCGGTTGAGGGAGAGGTGAGGGAGGTGAAGCGGAGGGCGTCGCAGTGGAGGCAGAGGTGGAAGAGCTGGGAGATGGTTTGGTTGGAGGAGAGGGCATCGAGGTGGTGGAGTTGGAGGGAGATGGAATCTGGGTCGGGTTCGGAGGTGGCGGAGAAGGATTCGGGTTGGGGGAGAGTAGGGGCGGAGGGGAAGGGGGAGAAGAGGAGGGTCTGGTGGTCAAGGGCGACGGAGAAGGAGAGGAGAAGAGTGAAGGTAATGGAAAAGAAGAAATGGGTTTTCTTTTTCTCCTCCATTTTTTTGGGTGGGGAGAAGAGAGAGAGAGAGAGGGAAAGAGGGTTTGGGGAAGAAGAAGTGGGAGAGAGAGTGAAGCATGCTTCTGTTCTGCAGGAAGAGGCTTTGAGTAGGGGTATTTTGGGAATTTCCCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0042538 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

322

Amino Acids

36.61

Weight (kDa)

9.51

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AatII	GACGTC	2 cut(s)	261, 486
AccII	CGCG	1 cut(s)	246
AciI	CCGC	7 cut(s)	234, 244, 378, 542, 571, 689, 722
AclWI	GGATC	2 cut(s)	336, 392
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	2 cut(s)	99, 957
AcyI	GRCGYC	4 cut(s)	258, 483, 534, 578
AfiI	CCNNNNNNNGG	1 cut(s)	511
AgsI	TTSAA	1 cut(s)	22
AjuI	GAANNNNNNNTTGG	4 cut(s)	338, 370, 861, 893
AleI	CACNNNNGTG	1 cut(s)	146
AluBI	AGCT	3 cut(s)	399, 491, 606
AluI	AGCT	3 cut(s)	399, 491, 606
Alw26I	GTCTC	1 cut(s)	256
AlwI	GGATC	2 cut(s)	336, 392
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	2 cut(s)	99, 957
AspLEI	GCGC	2 cut(s)	248, 467
AspS9I	GGNCC	1 cut(s)	502
AsuC2I	CCSGG	1 cut(s)	382
AsuHPI	GGTGA	3 cut(s)	352, 568, 577
AvaII	GGWCC	1 cut(s)	502
BalI	TGGCCA	1 cut(s)	152
BbvCI	CCTCAGC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	461
BccI	CCATC	5 cut(s)	35, 188, 428, 607, 655
BceAI	ACGGC	2 cut(s)	233, 353
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BcnI	CCSGG	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	256
BfaI	CTAG	1 cut(s)	435
BfmI	CTRYAG	2 cut(s)	394, 923
BisI	GCNGC	3 cut(s)	234, 378, 450
BlsI	GCNGC	3 cut(s)	235, 379, 451
Bme1390I	CCNGG	1 cut(s)	382
Bme18I	GGWCC	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	1 cut(s)	474
BmrFI	CCNGG	1 cut(s)	382
BmrI	ACTGGG	1 cut(s)	153
BmsI	GCATC	3 cut(s)	192, 529, 644
BmuI	ACTGGG	1 cut(s)	153
BpmI	CTGGAG	1 cut(s)	491
Bpu10I	CCTNAGC	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	382
BsaHI	GRCGYC	4 cut(s)	258, 483, 534, 578
BsaJI	CCNNGG	1 cut(s)	289
BsaXI	ACNNNNNCTCC	4 cut(s)	480, 510, 888, 918
Bsc4I	CCNNNNNNNGG	1 cut(s)	511
Bse1I	ACTGG	2 cut(s)	159, 474
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	3 cut(s)	180, 186, 423
BseLI	CCNNNNNNNGG	1 cut(s)	511
BseMII	CTCAG	2 cut(s)	61, 208
BseNI	ACTGG	2 cut(s)	159, 474
BseRI	GAGGAG	6 cut(s)	182, 305, 641, 757, 793, 817
BseXI	GCAGC	1 cut(s)	461
BseYI	CCCAGC	2 cut(s)	172, 606
Bsh1236I	CGCG	1 cut(s)	246
Bsh1285I	CGRYCG	1 cut(s)	298
BshFI	GGCC	1 cut(s)	152
BsiEI	CGRYCG	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	511
BsmAI	GTCTC	1 cut(s)	256
BsmBI	CGTCTC	1 cut(s)	256
BsmFI	GGGAC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	152
Bsp143I	GATC	2 cut(s)	341, 384
BspACI	CCGC	7 cut(s)	234, 244, 378, 542, 571, 689, 722
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	2 cut(s)	60, 207
BspFNI	CGCG	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	474
BspMAI	CTGCAG	1 cut(s)	927
BspPI	GGATC	2 cut(s)	336, 392
BspQI	GCTCTTC	1 cut(s)	596
BsrI	ACTGG	2 cut(s)	159, 474
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	2 cut(s)	341, 384
BssNI	GRCGYC	4 cut(s)	258, 483, 534, 578
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	5 cut(s)	596, 734, 778, 845, 924
BstACI	GRCGYC	4 cut(s)	258, 483, 534, 578
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	154, 912
BstDEI	CTNAG	2 cut(s)	47, 194
BstF5I	GGATG	3 cut(s)	180, 186, 423
BstFNI	CGCG	1 cut(s)	246
BstHHI	GCGC	2 cut(s)	248, 467
BstKTI	GATC	2 cut(s)	344, 387
BstMAI	GTCTC	1 cut(s)	256
BstMBI	GATC	2 cut(s)	341, 384
BstMCI	CGRYCG	1 cut(s)	298
BstMWI	GCNNNNNNNGC	3 cut(s)	455, 464, 589
BstNSI	RCATGY	1 cut(s)	914
BstSCI	CCNGG	1 cut(s)	380
BstSFI	CTRYAG	2 cut(s)	394, 923
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	461
BstXI	CCANNNNNNTGG	1 cut(s)	838
BsuRI	GGCC	1 cut(s)	152
BtgZI	GCGATG	1 cut(s)	214
BtsCI	GGATG	3 cut(s)	180, 186, 423
BtsI	GCAGTG	1 cut(s)	590
BtsIMutI	CAGTG	2 cut(s)	467, 590
Cac8I	GCNNGC	2 cut(s)	154, 912
CfoI	GCGC	2 cut(s)	248, 467
Cfr13I	GGNCC	1 cut(s)	502
CseI	GACGC	2 cut(s)	542, 567
CviAII	CATG	3 cut(s)	238, 506, 911
DdeI	CTNAG	2 cut(s)	47, 194
DpnI	GATC	2 cut(s)	343, 386
DpnII	GATC	2 cut(s)	341, 384
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	150
Eam1104I	CTCTTC	5 cut(s)	596, 734, 778, 845, 924
EarI	CTCTTC	5 cut(s)	596, 734, 778, 845, 924
EciI	GGCGGA	2 cut(s)	704, 737
Eco47I	GGWCC	1 cut(s)	502
Esp3I	CGTCTC	1 cut(s)	256
FaeI	CATG	3 cut(s)	241, 509, 914
FaiI	YATR	6 cut(s)	15, 125, 169, 239, 507, 912
FaqI	GGGAC	1 cut(s)	285
FatI	CATG	3 cut(s)	237, 505, 910
FauI	CCCGC	1 cut(s)	251
Fnu4HI	GCNGC	3 cut(s)	234, 378, 450
FokI	GGATG	3 cut(s)	167, 173, 410
Fsp4HI	GCNGC	3 cut(s)	234, 378, 450
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	2 cut(s)	247, 466
GluI	GCNGC	3 cut(s)	234, 378, 450
GsaI	CCCAGC	2 cut(s)	176, 610
GsuI	CTGGAG	1 cut(s)	491
HaeIII	GGCC	1 cut(s)	152
HapII	CCGG	1 cut(s)	382
HgaI	GACGC	2 cut(s)	542, 567
HhaI	GCGC	2 cut(s)	248, 467
Hin1I	GRCGYC	4 cut(s)	258, 483, 534, 578
Hin1II	CATG	3 cut(s)	241, 509, 914
Hin6I	GCGC	2 cut(s)	246, 465
HinP1I	GCGC	2 cut(s)	246, 465
HinfI	GANTC	5 cut(s)	9, 416, 438, 665, 698
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	3 cut(s)	352, 568, 577
Hpy188I	TCNGA	6 cut(s)	50, 217, 256, 370, 488, 682
Hpy188III	TCNNGA	1 cut(s)	302
Hpy99I	CGWCG	7 cut(s)	260, 263, 485, 488, 536, 583, 769
HpyAV	CCTTC	5 cut(s)	364, 688, 724, 766, 784
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4IV	ACGT	3 cut(s)	147, 258, 483
HpyCH4V	TGCA	2 cut(s)	458, 925
HpyF10VI	GCNNNNNNNGC	3 cut(s)	455, 464, 589
HpyF3I	CTNAG	2 cut(s)	47, 194
HpySE526I	ACGT	3 cut(s)	147, 258, 483
Hsp92I	GRCGYC	4 cut(s)	258, 483, 534, 578
Hsp92II	CATG	3 cut(s)	241, 509, 914
HspAI	GCGC	2 cut(s)	246, 465
Kzo9I	GATC	2 cut(s)	341, 384
LguI	GCTCTTC	1 cut(s)	596
LmnI	GCTCC	2 cut(s)	472, 488
Lsp1109I	GCAGC	1 cut(s)	461
LweI	GCATC	3 cut(s)	192, 529, 644
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	3 cut(s)	147, 258, 483
MalI	GATC	2 cut(s)	343, 386
MboI	GATC	2 cut(s)	341, 384
MboII	GAAGA	8 cut(s)	613, 751, 795, 817, 862, 896, 899, 941
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	2 cut(s)	99, 957
MluNI	TGGCCA	1 cut(s)	152
MlyI	GAGTC	3 cut(s)	3, 410, 447
MmeI	TCCRAC	5 cut(s)	240, 279, 466, 603, 632
Mox20I	TGGCCA	1 cut(s)	152
MscI	TGGCCA	1 cut(s)	152
MslI	CAYNNNNRTG	2 cut(s)	146, 640
Msp20I	TGGCCA	1 cut(s)	152
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	1 cut(s)	382
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	3 cut(s)	455, 464, 589
NciI	CCSGG	1 cut(s)	382
NdeII	GATC	2 cut(s)	341, 384
NlaIII	CATG	3 cut(s)	241, 509, 914
NlaIV	GGNNCC	1 cut(s)	474
NmeAIII	GCCGAG	1 cut(s)	270
NspI	RCATGY	1 cut(s)	914
OliI	CACNNNNGTG	1 cut(s)	146
PaeI	GCATGC	1 cut(s)	914
PciSI	GCTCTTC	1 cut(s)	596
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PfeI	GAWTC	2 cut(s)	665, 698
PkrI	GCNGC	3 cut(s)	235, 379, 451
PleI	GAGTC	3 cut(s)	3, 410, 446
PpsI	GAGTC	3 cut(s)	3, 410, 446
PspFI	CCCAGC	2 cut(s)	172, 606
PspN4I	GGNNCC	1 cut(s)	474
PspPI	GGNCC	1 cut(s)	502
PstI	CTGCAG	1 cut(s)	927
RseI	CAYNNNNRTG	2 cut(s)	146, 640
SapI	GCTCTTC	1 cut(s)	596
SatI	GCNGC	3 cut(s)	234, 378, 450
Sau3AI	GATC	2 cut(s)	341, 384
Sau96I	GGNCC	1 cut(s)	502
SchI	GAGTC	3 cut(s)	3, 410, 447
ScrFI	CCNGG	1 cut(s)	382
SfaNI	GCATC	3 cut(s)	192, 529, 644
SfcI	CTRYAG	2 cut(s)	394, 923
SinI	GGWCC	1 cut(s)	502
SmiMI	CAYNNNNRTG	2 cut(s)	146, 640
SphI	GCATGC	1 cut(s)	914
Sse9I	AATT	2 cut(s)	99, 957
SsiI	CCGC	7 cut(s)	234, 244, 378, 542, 571, 689, 722
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	299
TaiI	ACGT	3 cut(s)	150, 261, 486
TaqI	TCGA	3 cut(s)	414, 498, 638
TasI	AATT	2 cut(s)	99, 957
TauI	GCSGC	2 cut(s)	236, 380
TfiI	GAWTC	2 cut(s)	665, 698
TscAI	CASTG	2 cut(s)	474, 590
TseI	GCWGC	1 cut(s)	449
TspDTI	ATGAA	3 cut(s)	81, 153, 346
TspGWI	ACGGA	2 cut(s)	265, 782
TspRI	CASTG	2 cut(s)	474, 590
VpaK11BI	GGWCC	1 cut(s)	502
XapI	RAATTY	2 cut(s)	99, 957
XceI	RCATGY	1 cut(s)	914
XspI	CTAG	1 cut(s)	435
ZraI	GACGTC	2 cut(s)	259, 484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.