Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Forward (+)

1404518 .. 1407367

Gene Structure 2850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1015700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGTCGCTGAGAGAAAAGATAGAGGCAGAGGCTTCATTCAAGATCAGCAAGAAACACCCCTTCATCTTCGCGGCACACTCAGGCGGAAAGAAAGGTCAGATGAAGAATTTGATGGCGTCTTTTGAAGCGGTGGCTGGCAATGAACCTGGGAATCGCAGTAGCAGAGAGGAGCCAGTGCAAAGCAGTGATGCTATGAGGAAGCCTCGGATTTTACTTGCTGCTACTGGAAGTGTAGCTGCCCTAAAGTTTGTCAGCCTCTGCCAGATTTTTTCTCGATGGGCGGAAGTAAAAGCAGTTGCCACAAGAGCATCTTTGTGTTTCATTGATCGAGCATCGCTTCCAAAGGATGTGATTATTTACACTGATGGGGATGAATGGTCCAGTTGGAGGAAAATTGGAGATAGCGTGCTTCACATCGAACTTAAAAAATGGGCTGATATTATGGTTATTGCTCCATTGTCAGCAAACACACTAGGCAAGATTGCTGAGAGATTGTGTGACAATCTACTCACCTGTCTTGTAGATGCATGGGACTGGAAAAAGCCTTTGTTTGTTGCGCCGGCCATGAACACCTTGATGTGGAGCAATCCCTTCACCGAGCTACATGTGATGTCTATTGATAACCTAGGAATTTTACTCATCCCACCTATCCGTGGTGAAATGGCTGAGCCTTCTACAATCAACTCCACTGTAAGACTCTTTTACACTCACAAATTCAACAGGGTTGCTGCATTGGATGCATTACAAGACAATGCTCTGAGGAAGCCACGGATTCTACTCGCTGCTAGCGGGAGTGTAGCTGCCATAAAGTTTGCTCACCTCTGCCGTAGTTTCTCTGTATGGTCAGAAGTAAGAGCAATTGCCACAAGTGCATCTTTTCATTTCATCGATAGAGCATCACTCCCCAAGGATGTAATACTCTACACCGACGAAGAAGAATTGTCCAGATGGAACACAGAATATGATAGTGCGCGTCCCGTTGAGCTTCGCCATTGGGCTGATATAATGGTTATTGCCCCATTGTCAGCAAACACACTAGCCAAGATTGCCCGGGGATTGTGTGACAATCTACTCTCCTCTGTTGTATATGCATGGGATCACAACAAGCCTTTATATGTTGCACCGGCCATGAACGCCATGATGTGGAACAATCCTTTCACAGAGAAACATTTGAAGATGATTAGGGATGAACTCGGAGTTAAACTCATCCTTCCTCGTACAAAGAATGGTGCAATGGCTGAAATTGATGTGATTGACGGTTTTGTAAAAGACCGTTTACCAGACAAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

431

Amino Acids

48.08

Weight (kDa)

8.87

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavoprotein	PF02441	69 - 230	5.3e-25	Flavoprotein
Flavoprotein	PF02441	257 - 424	7.9e-27	Flavoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1143
AccII	CGCG	2 cut(s)	71, 973
AciI	CCGC	5 cut(s)	71, 84, 128, 281, 789
AclWI	GGATC	1 cut(s)	1104
AcoI	YGGCCR	2 cut(s)	561, 1125
AcsI	RAATTY	4 cut(s)	106, 630, 713, 1287
AcyI	GRCGYC	1 cut(s)	116
AfaI	GTAC	1 cut(s)	1219
AfiI	CCNNNNNNNGG	4 cut(s)	387, 579, 653, 1143
AflIII	ACRYGT	1 cut(s)	604
AgsI	TTSAA	4 cut(s)	40, 125, 718, 1174
AjnI	CCWGG	1 cut(s)	145
AluBI	AGCT	4 cut(s)	236, 601, 800, 985
AluI	AGCT	4 cut(s)	236, 601, 800, 985
AlwI	GGATC	1 cut(s)	1104
AlwNI	CAGNNNCTG	1 cut(s)	258
Ama87I	CYCGRG	1 cut(s)	1050
AoxI	GGCC	2 cut(s)	561, 1125
ApeKI	GCWGC	5 cut(s)	218, 236, 728, 782, 800
ApoI	RAATTY	4 cut(s)	106, 630, 713, 1287
AspA2I	CCTAGG	1 cut(s)	625
AspLEI	GCGC	2 cut(s)	559, 973
AspS9I	GGNCC	1 cut(s)	378
AsuC2I	CCSGG	2 cut(s)	1051, 1052
AsuHPI	GGTGA	4 cut(s)	502, 586, 668, 809
AsuNHI	GCTAGC	1 cut(s)	785
AvaI	CYCGRG	1 cut(s)	1050
AvaII	GGWCC	1 cut(s)	378
AvrII	CCTAGG	1 cut(s)	625
BbvI	GCAGC	5 cut(s)	205, 223, 715, 769, 787
BccI	CCATC	4 cut(s)	106, 270, 359, 942
BceAI	ACGGC	1 cut(s)	810
BciT130I	CCWGG	1 cut(s)	147
BcnI	CCSGG	2 cut(s)	1051, 1052
BfaI	CTAG	4 cut(s)	473, 626, 786, 1037
BisI	GCNGC	6 cut(s)	72, 219, 237, 729, 783, 801
BlnI	CCTAGG	1 cut(s)	625
BlpI	GCTNAGC	1 cut(s)	666
BlsI	GCNGC	6 cut(s)	73, 220, 238, 730, 784, 802
Bme1390I	CCNGG	3 cut(s)	147, 1051, 1052
Bme18I	GGWCC	1 cut(s)	378
BmeT110I	CYCGRG	1 cut(s)	1050
BmgT120I	GGNCC	1 cut(s)	378
BmiI	GGNNCC	1 cut(s)	171
BmrFI	CCNGG	3 cut(s)	147, 1051, 1052
BmsI	GCATC	7 cut(s)	178, 317, 341, 514, 727, 881, 905
BmtI	GCTAGC	1 cut(s)	789
BplI	GAGNNNNNCTC	6 cut(s)	187, 219, 885, 917, 1188, 1220
Bpu1102I	GCTNAGC	1 cut(s)	666
BpuMI	CCSGG	2 cut(s)	1051, 1052
Bsa29I	ATCGAT	1 cut(s)	888
BsaHI	GRCGYC	1 cut(s)	116
BsaJI	CCNNGG	8 cut(s)	146, 203, 625, 652, 767, 906, 1050, 1051
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	4 cut(s)	387, 579, 653, 1143
Bse118I	RCCGGY	2 cut(s)	559, 1123
Bse1I	ACTGG	4 cut(s)	173, 229, 381, 539
Bse3DI	GCAATG	2 cut(s)	145, 1239
BseBI	CCWGG	1 cut(s)	147
BseCI	ATCGAT	1 cut(s)	888
BseDI	CCNNGG	8 cut(s)	146, 203, 625, 652, 767, 906, 1050, 1051
BseGI	GGATG	7 cut(s)	352, 376, 639, 742, 916, 1192, 1206
BseLI	CCNNNNNNNGG	4 cut(s)	387, 579, 653, 1143
BseMI	GCAATG	2 cut(s)	145, 1239
BseMII	CTCAG	4 cut(s)	93, 477, 657, 749
BseNI	ACTGG	4 cut(s)	173, 229, 381, 539
BseRI	GAGGAG	2 cut(s)	182, 1066
BseXI	GCAGC	5 cut(s)	205, 223, 715, 769, 787
Bsh1236I	CGCG	2 cut(s)	71, 973
BshFI	GGCC	2 cut(s)	563, 1127
BshVI	ATCGAT	1 cut(s)	888
BsiHKCI	CYCGRG	1 cut(s)	1050
BsiSI	CCGG	3 cut(s)	560, 1051, 1124
BslFI	GGGAC	2 cut(s)	545, 960
BslI	CCNNNNNNNGG	4 cut(s)	387, 579, 653, 1143
BsmFI	GGGAC	2 cut(s)	545, 960
BsnI	GGCC	2 cut(s)	563, 1127
BsoBI	CYCGRG	1 cut(s)	1050
Bsp143I	GATC	3 cut(s)	42, 325, 1096
Bsp1720I	GCTNAGC	1 cut(s)	666
BspACI	CCGC	5 cut(s)	71, 84, 128, 281, 789
BspANI	GGCC	2 cut(s)	563, 1127
BspCNI	CTCAG	4 cut(s)	92, 478, 658, 750
BspDI	ATCGAT	1 cut(s)	888
BspFNI	CGCG	2 cut(s)	71, 973
BspLI	GGNNCC	1 cut(s)	171
BspOI	GCTAGC	1 cut(s)	789
BspPI	GGATC	1 cut(s)	1104
BsrDI	GCAATG	2 cut(s)	145, 1239
BsrFI	RCCGGY	2 cut(s)	559, 1123
BsrI	ACTGG	4 cut(s)	173, 229, 381, 539
BssAI	RCCGGY	2 cut(s)	559, 1123
BssECI	CCNNGG	8 cut(s)	146, 203, 625, 652, 767, 906, 1050, 1051
BssMI	GATC	3 cut(s)	42, 325, 1096
BssNI	GRCGYC	1 cut(s)	116
BssT1I	CCWWGG	2 cut(s)	625, 906
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	3 cut(s)	691, 1259, 1274
BstACI	GRCGYC	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	737
BstC8I	GCNNGC	4 cut(s)	136, 407, 561, 787
BstDEI	CTNAG	5 cut(s)	8, 79, 486, 666, 758
BstDSI	CCRYGG	2 cut(s)	652, 767
BstF5I	GGATG	7 cut(s)	352, 376, 639, 742, 916, 1192, 1206
BstFNI	CGCG	2 cut(s)	71, 973
BstHHI	GCGC	2 cut(s)	559, 973
BstKTI	GATC	3 cut(s)	45, 328, 1099
BstMBI	GATC	3 cut(s)	42, 325, 1096
BstMWI	GCNNNNNNNGC	5 cut(s)	305, 737, 869, 1046, 1133
BstNI	CCWGG	1 cut(s)	147
BstNSI	RCATGY	1 cut(s)	608
BstSCI	CCNGG	3 cut(s)	145, 1049, 1050
BstUI	CGCG	2 cut(s)	71, 973
BstV1I	GCAGC	5 cut(s)	205, 223, 715, 769, 787
Bsu15I	ATCGAT	1 cut(s)	888
BsuRI	GGCC	2 cut(s)	563, 1127
BsuTUI	ATCGAT	1 cut(s)	888
BtgI	CCRYGG	2 cut(s)	652, 767
BtgZI	GCGATG	1 cut(s)	318
BtsCI	GGATG	7 cut(s)	352, 376, 639, 742, 916, 1192, 1206
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	4 cut(s)	180, 190, 360, 687
Cac8I	GCNNGC	4 cut(s)	136, 407, 561, 787
CaiI	CAGNNNCTG	1 cut(s)	258
CfoI	GCGC	2 cut(s)	559, 973
Cfr10I	RCCGGY	2 cut(s)	559, 1123
Cfr13I	GGNCC	1 cut(s)	378
Cfr9I	CCCGGG	1 cut(s)	1050
ClaI	ATCGAT	1 cut(s)	888
CseI	GACGC	2 cut(s)	105, 962
Csp6I	GTAC	1 cut(s)	1218
CviAII	CATG	6 cut(s)	528, 565, 605, 1092, 1129, 1138
CviQI	GTAC	1 cut(s)	1218
DdeI	CTNAG	5 cut(s)	8, 79, 486, 666, 758
DpnI	GATC	3 cut(s)	44, 327, 1098
DpnII	GATC	3 cut(s)	42, 325, 1096
EaeI	YGGCCR	2 cut(s)	561, 1125
EciI	GGCGGA	2 cut(s)	99, 296
Eco130I	CCWWGG	2 cut(s)	625, 906
Eco47I	GGWCC	1 cut(s)	378
Eco88I	CYCGRG	1 cut(s)	1050
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	2 cut(s)	625, 906
EcoT22I	ATGCAT	3 cut(s)	529, 742, 1093
ErhI	CCWWGG	2 cut(s)	625, 906
FaeI	CATG	6 cut(s)	531, 568, 608, 1095, 1132, 1141
FalI	AAGNNNNNCTT	4 cut(s)	295, 327, 859, 891
FaqI	GGGAC	2 cut(s)	545, 960
FatI	CATG	6 cut(s)	527, 564, 604, 1091, 1128, 1137
FauI	CCCGC	1 cut(s)	782
Fnu4HI	GCNGC	6 cut(s)	72, 219, 237, 729, 783, 801
FokI	GGATG	7 cut(s)	359, 383, 626, 749, 923, 1193, 1199
Fsp4HI	GCNGC	6 cut(s)	72, 219, 237, 729, 783, 801
FspBI	CTAG	4 cut(s)	473, 626, 786, 1037
GlaI	GCGC	2 cut(s)	558, 972
GluI	GCNGC	6 cut(s)	72, 219, 237, 729, 783, 801
HaeIII	GGCC	2 cut(s)	563, 1127
HapII	CCGG	3 cut(s)	560, 1051, 1124
HgaI	GACGC	2 cut(s)	105, 962
HhaI	GCGC	2 cut(s)	559, 973
Hin1I	GRCGYC	1 cut(s)	116
Hin1II	CATG	6 cut(s)	531, 568, 608, 1095, 1132, 1141
Hin6I	GCGC	2 cut(s)	557, 971
HinP1I	GCGC	2 cut(s)	557, 971
HinfI	GANTC	3 cut(s)	151, 696, 772
HpaII	CCGG	3 cut(s)	560, 1051, 1124
HphI	GGTGA	4 cut(s)	502, 586, 668, 809
Hpy166II	GTNNAC	1 cut(s)	1277
Hpy188I	TCNGA	5 cut(s)	99, 207, 759, 847, 1196
Hpy188III	TCNNGA	3 cut(s)	40, 273, 945
Hpy8I	GTNNAC	1 cut(s)	1277
Hpy99I	CGWCG	1 cut(s)	932
HpyAV	CCTTC	4 cut(s)	70, 601, 681, 1220
HpyCH4III	ACNGT	3 cut(s)	691, 1259, 1274
HpyCH4V	TGCA	8 cut(s)	178, 527, 731, 740, 872, 1091, 1121, 1232
HpyF10VI	GCNNNNNNNGC	5 cut(s)	305, 737, 869, 1046, 1133
HpyF3I	CTNAG	5 cut(s)	8, 79, 486, 666, 758
Hsp92I	GRCGYC	1 cut(s)	116
Hsp92II	CATG	6 cut(s)	531, 568, 608, 1095, 1132, 1141
HspAI	GCGC	2 cut(s)	557, 971
KroI	GCCGGC	1 cut(s)	559
KroNI	GCCGGC	1 cut(s)	561
Kzo9I	GATC	3 cut(s)	42, 325, 1096
LmnI	GCTCC	3 cut(s)	169, 457, 582
Lsp1109I	GCAGC	5 cut(s)	205, 223, 715, 769, 787
LweI	GCATC	7 cut(s)	178, 317, 341, 514, 727, 881, 905
MaeI	CTAG	4 cut(s)	473, 626, 786, 1037
MaeIII	GTNAC	2 cut(s)	497, 1061
MalI	GATC	3 cut(s)	44, 327, 1098
MboI	GATC	3 cut(s)	42, 325, 1096
MboII	GAAGA	5 cut(s)	58, 115, 944, 947, 1186
MfeI	CAATTG	1 cut(s)	858
MluCI	AATT	8 cut(s)	106, 393, 630, 713, 858, 938, 1242, 1287
MlyI	GAGTC	1 cut(s)	690
MmeI	TCCRAC	1 cut(s)	365
Mph1103I	ATGCAT	3 cut(s)	529, 742, 1093
MroNI	GCCGGC	1 cut(s)	559
MseI	TTAA	2 cut(s)	423, 1200
MslI	CAYNNNNRTG	2 cut(s)	313, 575
MspI	CCGG	3 cut(s)	560, 1051, 1124
MspR9I	CCNGG	3 cut(s)	147, 1051, 1052
MunI	CAATTG	1 cut(s)	858
MvaI	CCWGG	1 cut(s)	147
MvnI	CGCG	2 cut(s)	71, 973
MwoI	GCNNNNNNNGC	5 cut(s)	305, 737, 869, 1046, 1133
NaeI	GCCGGC	1 cut(s)	561
NciI	CCSGG	2 cut(s)	1051, 1052
NdeII	GATC	3 cut(s)	42, 325, 1096
NgoMIV	GCCGGC	1 cut(s)	559
NheI	GCTAGC	1 cut(s)	785
NlaIII	CATG	6 cut(s)	531, 568, 608, 1095, 1132, 1141
NlaIV	GGNNCC	1 cut(s)	171
NmuCI	GTSAC	2 cut(s)	497, 1061
NsiI	ATGCAT	3 cut(s)	529, 742, 1093
NspI	RCATGY	1 cut(s)	608
PciI	ACATGT	1 cut(s)	604
PdiI	GCCGGC	1 cut(s)	561
PfeI	GAWTC	2 cut(s)	151, 772
PflMI	CCANNNNNTGG	1 cut(s)	1143
PkrI	GCNGC	6 cut(s)	73, 220, 238, 730, 784, 802
PleI	GAGTC	1 cut(s)	690
PpsI	GAGTC	1 cut(s)	690
PscI	ACATGT	1 cut(s)	604
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	171
PspPI	GGNCC	1 cut(s)	378
PstNI	CAGNNNCTG	1 cut(s)	258
RsaI	GTAC	1 cut(s)	1219
RsaNI	GTAC	1 cut(s)	1218
RseI	CAYNNNNRTG	2 cut(s)	313, 575
SaqAI	TTAA	2 cut(s)	423, 1200
SatI	GCNGC	6 cut(s)	72, 219, 237, 729, 783, 801
Sau3AI	GATC	3 cut(s)	42, 325, 1096
Sau96I	GGNCC	1 cut(s)	378
SchI	GAGTC	1 cut(s)	690
ScrFI	CCNGG	3 cut(s)	147, 1051, 1052
SfaNI	GCATC	7 cut(s)	178, 317, 341, 514, 727, 881, 905
SinI	GGWCC	1 cut(s)	378
SmaI	CCCGGG	1 cut(s)	1052
SmiMI	CAYNNNNRTG	2 cut(s)	313, 575
Sse9I	AATT	8 cut(s)	106, 393, 630, 713, 858, 938, 1242, 1287
SsiI	CCGC	5 cut(s)	71, 84, 128, 281, 789
SspMI	CTAG	4 cut(s)	473, 626, 786, 1037
StyD4I	CCNGG	3 cut(s)	145, 1049, 1050
StyI	CCWWGG	2 cut(s)	625, 906
TaaI	ACNGT	3 cut(s)	691, 1259, 1274
TaqI	TCGA	4 cut(s)	274, 328, 417, 888
TasI	AATT	8 cut(s)	106, 393, 630, 713, 858, 938, 1242, 1287
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	2 cut(s)	151, 772
Tru1I	TTAA	2 cut(s)	423, 1200
Tru9I	TTAA	2 cut(s)	423, 1200
TscAI	CASTG	4 cut(s)	180, 190, 367, 694
TseFI	GTSAC	2 cut(s)	497, 1061
TseI	GCWGC	5 cut(s)	218, 236, 728, 782, 800
Tsp45I	GTSAC	2 cut(s)	497, 1061
TspGWI	ACGGA	2 cut(s)	641, 784
TspMI	CCCGGG	1 cut(s)	1050
TspRI	CASTG	4 cut(s)	180, 190, 367, 694
Van91I	CCANNNNNTGG	1 cut(s)	1143
VpaK11BI	GGWCC	1 cut(s)	378
XapI	RAATTY	4 cut(s)	106, 630, 713, 1287
XceI	RCATGY	1 cut(s)	608
XmaI	CCCGGG	1 cut(s)	1050
XmaJI	CCTAGG	1 cut(s)	625
XspI	CTAG	4 cut(s)	473, 626, 786, 1037
Zsp2I	ATGCAT	3 cut(s)	529, 742, 1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.