Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Forward (+)

57680656 .. 57684611

Gene Structure 3956 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCTTGCTCTGAATCTGGCGGAGAAGAAAGGGAAGCAACACAAGCCAATGCTGCTCCAAGGAAGCCACGGATTCTACTTGCTGCTAGTGGAAGTGTAGCTGCCATAAAGTTTGGTAACCTCTGCCATTCTTTTTGTGAATGGGCTGAAGTAAGAGCCATTGCCACAAAAGCATCCTTGCATTTCATTGATAGAGCAGCACTTCCCAAAGATGTAATTCTTTACACAGATGATGATGAATGGTCCAGTTGGAACAAAATAGGTGATAGTGTGCTTCATATTGAGCTACGCCGTTGGGCTGATGTCATGGTTATTGCCCCATTGTCAGCAAACACCTTAGCCAAGATTGCTGGCGGTTTGTGTGACAATCTACTCACCTGTGTTGTGCGAGCATGGGACTACAACAAGCCTTTGTTTGTTGCACCAGCCATGAACACCTTGATGTGGAAGAATCCCTTCACAGAGCGACATCTCATGTCGATTGATGAACTTGGAGTTTCGCTCATCCCACCTGTCAAGAAGAGGCTGGCTTGTGGGGATTATGGGAATGGTGCAATGGCTGAGCCTTCTGTGATCTATTCTACTGTAAGACTATTCTATGAGTCGCGAGTTCAACAAGGTGGCAGTAGTGTTCAGTCTACTGGATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0042538 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

216

Amino Acids

23.59

Weight (kDa)

6.42

Isoelectric Point (pI)

48.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavoprotein	PF02441	24 - 195	1.3e-29	Flavoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	638
AccII	CGCG	1 cut(s)	607
AciI	CCGC	2 cut(s)	21, 354
AcuI	CTGAAG	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	444
AgsI	TTSAA	1 cut(s)	614
AluBI	AGCT	2 cut(s)	101, 286
AluI	AGCT	2 cut(s)	101, 286
ApeKI	GCWGC	4 cut(s)	53, 83, 101, 197
Asp700I	GAANNNNTTC	1 cut(s)	455
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	2 cut(s)	275, 367
AvaII	GGWCC	1 cut(s)	243
BbvI	GCAGC	4 cut(s)	40, 70, 88, 209
BceAI	ACGGC	1 cut(s)	276
BfaI	CTAG	1 cut(s)	87
BisI	GCNGC	4 cut(s)	54, 84, 102, 198
BlpI	GCTNAGC	1 cut(s)	561
BlsI	GCNGC	4 cut(s)	55, 85, 103, 199
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	243
BmsI	GCATC	1 cut(s)	182
BplI	GAGNNNNNCTC	2 cut(s)	486, 518
Bpu10I	CCTNAGC	1 cut(s)	337
Bpu1102I	GCTNAGC	1 cut(s)	561
BsaJI	CCNNGG	2 cut(s)	59, 68
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse1I	ACTGG	2 cut(s)	246, 646
Bse3DI	GCAATG	2 cut(s)	159, 561
BseDI	CCNNGG	2 cut(s)	59, 68
BseGI	GGATG	2 cut(s)	173, 504
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMI	GCAATG	2 cut(s)	159, 561
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	2 cut(s)	246, 646
BseXI	GCAGC	4 cut(s)	40, 70, 88, 209
Bsh1236I	CGCG	1 cut(s)	607
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmFI	GGGAC	1 cut(s)	410
Bsp143I	GATC	2 cut(s)	573, 644
Bsp1720I	GCTNAGC	1 cut(s)	561
Bsp68I	TCGCGA	1 cut(s)	607
BspACI	CCGC	2 cut(s)	21, 354
BspCNI	CTCAG	1 cut(s)	553
BspFNI	CGCG	1 cut(s)	607
BsrDI	GCAATG	2 cut(s)	159, 561
BsrI	ACTGG	2 cut(s)	246, 646
BssECI	CCNNGG	2 cut(s)	59, 68
BssMI	GATC	2 cut(s)	573, 644
BssT1I	CCWWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	586
Bst6I	CTCTTC	1 cut(s)	515
BstC8I	GCNNGC	4 cut(s)	7, 352, 390, 528
BstDEI	CTNAG	2 cut(s)	337, 561
BstDSI	CCRYGG	1 cut(s)	68
BstEII	GGTNACC	1 cut(s)	116
BstF5I	GGATG	2 cut(s)	173, 504
BstFNI	CGCG	1 cut(s)	607
BstKTI	GATC	2 cut(s)	576, 647
BstMBI	GATC	2 cut(s)	573, 644
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 53, 170, 347
BstPI	GGTNACC	1 cut(s)	116
BstUI	CGCG	1 cut(s)	607
BstV1I	GCAGC	4 cut(s)	40, 70, 88, 209
BtgI	CCRYGG	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	173, 504
BtuMI	TCGCGA	1 cut(s)	607
Cac8I	GCNNGC	4 cut(s)	7, 352, 390, 528
Cfr13I	GGNCC	1 cut(s)	243
CviAII	CATG	4 cut(s)	307, 393, 430, 475
DdeI	CTNAG	2 cut(s)	337, 561
DpnI	GATC	2 cut(s)	575, 646
DpnII	GATC	2 cut(s)	573, 644
Eam1104I	CTCTTC	1 cut(s)	515
EarI	CTCTTC	1 cut(s)	515
EciI	GGCGGA	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	168
Eco91I	GGTNACC	1 cut(s)	116
EcoO65I	GGTNACC	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	4 cut(s)	310, 396, 433, 478
FaiI	YATR	8 cut(s)	107, 279, 308, 394, 431, 476, 543, 600
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	4 cut(s)	306, 392, 429, 474
FblI	GTMKAC	1 cut(s)	638
Fnu4HI	GCNGC	4 cut(s)	54, 84, 102, 198
FokI	GGATG	2 cut(s)	160, 491
Fsp4HI	GCNGC	4 cut(s)	54, 84, 102, 198
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	4 cut(s)	54, 84, 102, 198
Hin1II	CATG	4 cut(s)	310, 396, 433, 478
HinfI	GANTC	4 cut(s)	14, 73, 451, 602
HphI	GGTGA	2 cut(s)	275, 367
Hpy166II	GTNNAC	1 cut(s)	639
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	517, 606
Hpy8I	GTNNAC	1 cut(s)	639
HpyAV	CCTTC	2 cut(s)	466, 576
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4V	TGCA	3 cut(s)	181, 422, 554
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 53, 170, 347
HpyF3I	CTNAG	2 cut(s)	337, 561
Hsp92II	CATG	4 cut(s)	310, 396, 433, 478
Kzo9I	GATC	2 cut(s)	573, 644
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	8 cut(s)	3, 259, 336, 391, 438, 512, 525, 627
Lsp1109I	GCAGC	4 cut(s)	40, 70, 88, 209
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	116, 362
MalI	GATC	2 cut(s)	575, 646
MboI	GATC	2 cut(s)	573, 644
MboII	GAAGA	3 cut(s)	38, 460, 532
MluCI	AATT	1 cut(s)	216
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	1 cut(s)	230
MnlI	CCTC	2 cut(s)	131, 516
MroXI	GAANNNNTTC	1 cut(s)	455
MslI	CAYNNNNRTG	1 cut(s)	440
MvnI	CGCG	1 cut(s)	607
MwoI	GCNNNNNNNGC	4 cut(s)	44, 53, 170, 347
NdeII	GATC	2 cut(s)	573, 644
NlaIII	CATG	4 cut(s)	310, 396, 433, 478
NmuCI	GTSAC	1 cut(s)	362
NruI	TCGCGA	1 cut(s)	607
PdmI	GAANNNNTTC	1 cut(s)	455
PfeI	GAWTC	3 cut(s)	14, 73, 451
PkrI	GCNGC	4 cut(s)	55, 85, 103, 199
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
PspEI	GGTNACC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	243
RruI	TCGCGA	1 cut(s)	607
RseI	CAYNNNNRTG	1 cut(s)	440
SatI	GCNGC	4 cut(s)	54, 84, 102, 198
Sau3AI	GATC	2 cut(s)	573, 644
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	1 cut(s)	611
SetI	ASST	9 cut(s)	103, 123, 265, 288, 338, 380, 440, 514, 622
SfaNI	GCATC	1 cut(s)	182
SinI	GGWCC	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	440
Sse9I	AATT	1 cut(s)	216
SsiI	CCGC	2 cut(s)	21, 354
SspMI	CTAG	1 cut(s)	87
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	586
TaqI	TCGA	1 cut(s)	479
TasI	AATT	1 cut(s)	216
TfiI	GAWTC	3 cut(s)	14, 73, 451
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	4 cut(s)	53, 83, 101, 197
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	5 cut(s)	175, 252, 266, 446, 501
TspGWI	ACGGA	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	638
XmnI	GAANNNNTTC	1 cut(s)	455
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.