Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Forward (+)

42978777 .. 42979981

Gene Structure 1205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00362120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCTTGCTCTATCGCAGGGAGAAGAGAGGAACCAACACAAGCCAATGCTGCTCCGAGGAAGCCACGGATTCTACTTGCTGCTAGTGGAAGTGTTGCTGCCATAAAGTTTGCAAACACCCTAGCCAAGATTGCCGGCGGTTTTTGTGACAACCTACTCACCTGTGCTGTGCGAGCATGGGACTACAACAAGCCTTTGTTTATTGCACCAGCCATGAACACCTTGATGTGGAAGATTCCCTTCACAGAGCGACATGTCATTTCCATTGATGAACTTGGAGTTTCACTCATCCCACCTGTCTCGAAGAGGCTGGCTTGTGGGGATTACGGGAATGGTGCAATGGCTGAGCCTTCTGTGATCTCTTCTACCGTAAGACTATTCTGTGAGTCACAAGTACAACAAGGTGGCAATATTGTTCAATCAACATGTGATATCCCGCACCCGAATATGAAGCTTATAATTACCAGGATTATTAATATAGTTGAAGTAAGAGAAGACGCAGACATCAAGGAATTGGATGAGCTGTTCATTTGTGCACCTCCAGCCCCAGCTGCCACTCCACCACCTCTTGCACGTCGTCCACCACCGCCACGTCCGCTAATGCTTCCACCGCCACGTCCGCTAATGCTTCCTCCTTTGGCAGCCGCTGAAGTGACAATCATGATCAACAAAAACAGAACTTTCCAAAGCATCATTTCGAAAGTTGAGGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0042538 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

237

Amino Acids

25.65

Weight (kDa)

8.9

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavoprotein	PF02441	38 - 121	1e-07	Flavoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	458
AciI	CCGC	7 cut(s)	138, 437, 587, 596, 611, 620, 645
AcuI	CTGAAG	1 cut(s)	669
AfaI	GTAC	1 cut(s)	396
AfiI	CCNNNNNNNGG	1 cut(s)	228
AflIII	ACRYGT	2 cut(s)	253, 425
AgsI	TTSAA	2 cut(s)	419, 485
AjiI	CACGTC	3 cut(s)	575, 593, 617
AjnI	CCWGG	1 cut(s)	464
AloI	GAACNNNNNNTCC	2 cut(s)	509, 541
AluBI	AGCT	3 cut(s)	454, 523, 551
AluI	AGCT	3 cut(s)	454, 523, 551
Alw21I	GWGCWC	1 cut(s)	538
Alw26I	GTCTC	1 cut(s)	304
Alw44I	GTGCAC	1 cut(s)	534
AlwNI	CAGNNNCTG	1 cut(s)	647
ApaLI	GTGCAC	1 cut(s)	534
ApeKI	GCWGC	5 cut(s)	50, 80, 98, 551, 641
AseI	ATTAAT	1 cut(s)	474
AsuHPI	GGTGA	1 cut(s)	151
AsuII	TTCGAA	1 cut(s)	698
BaeGI	GKGCMC	1 cut(s)	538
BbsI	GAAGAC	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	5 cut(s)	37, 67, 85, 538, 653
BciT130I	CCWGG	1 cut(s)	466
BclI	TGATCA	1 cut(s)	663
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	2 cut(s)	84, 122
BisI	GCNGC	6 cut(s)	51, 81, 99, 552, 642, 645
BlpI	GCTNAGC	1 cut(s)	345
BlsI	GCNGC	6 cut(s)	52, 82, 100, 553, 643, 646
Bme1390I	CCNGG	1 cut(s)	466
BmgBI	CACGTC	3 cut(s)	575, 593, 617
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	699
BpiI	GAAGAC	1 cut(s)	501
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
BpmI	CTGGAG	1 cut(s)	525
Bpu1102I	GCTNAGC	1 cut(s)	345
Bpu14I	TTCGAA	1 cut(s)	698
BsaJI	CCNNGG	2 cut(s)	56, 65
Bsc4I	CCNNNNNNNGG	1 cut(s)	228
Bse118I	RCCGGY	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	345
BseBI	CCWGG	1 cut(s)	466
BseDI	CCNNGG	2 cut(s)	56, 65
BseGI	GGATG	2 cut(s)	288, 523
BseLI	CCNNNNNNNGG	1 cut(s)	228
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	336
BseSI	GKGCMC	1 cut(s)	538
BseXI	GCAGC	5 cut(s)	37, 67, 85, 538, 653
BseYI	CCCAGC	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	538
BsiSI	CCGG	1 cut(s)	135
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	1 cut(s)	228
BsmAI	GTCTC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	194
Bsp119I	TTCGAA	1 cut(s)	698
Bsp1286I	GDGCHC	1 cut(s)	538
Bsp143I	GATC	2 cut(s)	357, 663
Bsp1720I	GCTNAGC	1 cut(s)	345
BspACI	CCGC	7 cut(s)	138, 437, 587, 596, 611, 620, 645
BspCNI	CTCAG	1 cut(s)	337
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	1 cut(s)	33
BspT104I	TTCGAA	1 cut(s)	698
BsrDI	GCAATG	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssECI	CCNNGG	2 cut(s)	56, 65
BssMI	GATC	2 cut(s)	357, 663
Bst2UI	CCWGG	1 cut(s)	466
Bst4CI	ACNGT	1 cut(s)	370
Bst6I	CTCTTC	3 cut(s)	19, 299, 367
BstBI	TTCGAA	1 cut(s)	698
BstC8I	GCNNGC	4 cut(s)	7, 136, 174, 312
BstDEI	CTNAG	1 cut(s)	345
BstDSI	CCRYGG	1 cut(s)	65
BstF5I	GGATG	2 cut(s)	288, 523
BstKTI	GATC	2 cut(s)	360, 666
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	2 cut(s)	357, 663
BstMWI	GCNNNNNNNGC	8 cut(s)	50, 131, 173, 542, 551, 595, 610, 619
BstNI	CCWGG	1 cut(s)	466
BstNSI	RCATGY	2 cut(s)	257, 429
BstSCI	CCNGG	1 cut(s)	464
BstSLI	GKGCMC	1 cut(s)	538
BstV1I	GCAGC	5 cut(s)	37, 67, 85, 538, 653
BstV2I	GAAGAC	1 cut(s)	501
BtgI	CCRYGG	1 cut(s)	65
BtrI	CACGTC	3 cut(s)	575, 593, 617
BtsCI	GGATG	2 cut(s)	288, 523
Cac8I	GCNNGC	4 cut(s)	7, 136, 174, 312
CaiI	CAGNNNCTG	1 cut(s)	647
CciI	TCATGA	1 cut(s)	660
Cfr10I	RCCGGY	1 cut(s)	134
CseI	GACGC	1 cut(s)	506
Csp6I	GTAC	1 cut(s)	395
CviAII	CATG	5 cut(s)	177, 214, 254, 426, 661
CviQI	GTAC	1 cut(s)	395
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	2 cut(s)	359, 665
DpnII	GATC	2 cut(s)	357, 663
Eam1104I	CTCTTC	3 cut(s)	19, 299, 367
EarI	CTCTTC	3 cut(s)	19, 299, 367
Eco32I	GATATC	1 cut(s)	433
Eco57I	CTGAAG	1 cut(s)	669
EcoRII	CCWGG	1 cut(s)	464
EcoRV	GATATC	1 cut(s)	433
FaeI	CATG	5 cut(s)	180, 217, 257, 429, 664
FaiI	YATR	9 cut(s)	104, 178, 215, 255, 427, 449, 458, 479, 662
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	5 cut(s)	176, 213, 253, 425, 660
FauI	CCCGC	1 cut(s)	444
FbaI	TGATCA	1 cut(s)	663
Fnu4HI	GCNGC	6 cut(s)	51, 81, 99, 552, 642, 645
FokI	GGATG	2 cut(s)	275, 530
Fsp4HI	GCNGC	6 cut(s)	51, 81, 99, 552, 642, 645
FspBI	CTAG	2 cut(s)	84, 122
GluI	GCNGC	6 cut(s)	51, 81, 99, 552, 642, 645
GsaI	CCCAGC	1 cut(s)	551
GsuI	CTGGAG	1 cut(s)	525
HapII	CCGG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	506
Hin1II	CATG	5 cut(s)	180, 217, 257, 429, 664
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	3 cut(s)	70, 235, 386
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	2 cut(s)	536, 581
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	2 cut(s)	301, 661
Hpy8I	GTNNAC	2 cut(s)	536, 581
Hpy99I	CGWCG	1 cut(s)	579
HpyAV	CCTTC	2 cut(s)	250, 360
HpyCH4III	ACNGT	1 cut(s)	370
HpyCH4IV	ACGT	3 cut(s)	574, 592, 616
HpyCH4V	TGCA	5 cut(s)	113, 206, 338, 536, 572
HpyF10VI	GCNNNNNNNGC	8 cut(s)	50, 131, 173, 542, 551, 595, 610, 619
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	3 cut(s)	574, 592, 616
Hsp92II	CATG	5 cut(s)	180, 217, 257, 429, 664
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
Ksp22I	TGATCA	1 cut(s)	663
Kzo9I	GATC	2 cut(s)	357, 663
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	5 cut(s)	37, 67, 85, 538, 653
LweI	GCATC	1 cut(s)	699
MaeI	CTAG	2 cut(s)	84, 122
MaeII	ACGT	3 cut(s)	574, 592, 616
MaeIII	GTNAC	3 cut(s)	146, 387, 652
MalI	GATC	2 cut(s)	359, 665
MboI	GATC	2 cut(s)	357, 663
MboII	GAAGA	5 cut(s)	36, 244, 316, 354, 506
MhlI	GDGCHC	1 cut(s)	538
MluCI	AATT	2 cut(s)	459, 512
MlyI	GAGTC	1 cut(s)	395
MnlI	CCTC	7 cut(s)	22, 51, 300, 549, 576, 642, 700
MroNI	GCCGGC	1 cut(s)	134
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	1 cut(s)	224
MspA1I	CMGCKG	2 cut(s)	551, 647
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	466
MwoI	GCNNNNNNNGC	8 cut(s)	50, 131, 173, 542, 551, 595, 610, 619
NaeI	GCCGGC	1 cut(s)	136
NdeII	GATC	2 cut(s)	357, 663
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	5 cut(s)	180, 217, 257, 429, 664
NlaIV	GGNNCC	1 cut(s)	33
NmuCI	GTSAC	3 cut(s)	146, 387, 652
NspI	RCATGY	2 cut(s)	257, 429
NspV	TTCGAA	1 cut(s)	698
PagI	TCATGA	1 cut(s)	660
PciI	ACATGT	2 cut(s)	253, 425
PdiI	GCCGGC	1 cut(s)	136
PfeI	GAWTC	2 cut(s)	70, 235
PkrI	GCNGC	6 cut(s)	52, 82, 100, 553, 643, 646
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PscI	ACATGT	2 cut(s)	253, 425
PshBI	ATTAAT	1 cut(s)	474
PsiI	TTATAA	1 cut(s)	458
Psp6I	CCWGG	1 cut(s)	464
PspFI	CCCAGC	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	464
PspN4I	GGNNCC	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	647
PvuII	CAGCTG	1 cut(s)	551
RsaI	GTAC	1 cut(s)	396
RsaNI	GTAC	1 cut(s)	395
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	6 cut(s)	51, 81, 99, 552, 642, 645
Sau3AI	GATC	2 cut(s)	357, 663
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	466
SduI	GDGCHC	1 cut(s)	538
SfaNI	GCATC	1 cut(s)	699
SfuI	TTCGAA	1 cut(s)	698
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	2 cut(s)	459, 512
SsiI	CCGC	7 cut(s)	138, 437, 587, 596, 611, 620, 645
SspI	AATATT	1 cut(s)	412
SspMI	CTAG	2 cut(s)	84, 122
StyD4I	CCNGG	1 cut(s)	464
TaaI	ACNGT	1 cut(s)	370
TaiI	ACGT	3 cut(s)	577, 595, 619
TaqI	TCGA	2 cut(s)	302, 698
TasI	AATT	2 cut(s)	459, 512
TatI	WGTACW	1 cut(s)	394
TauI	GCSGC	1 cut(s)	647
TfiI	GAWTC	2 cut(s)	70, 235
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TseFI	GTSAC	3 cut(s)	146, 387, 652
TseI	GCWGC	5 cut(s)	50, 80, 98, 551, 641
Tsp45I	GTSAC	3 cut(s)	146, 387, 652
TspDTI	ATGAA	4 cut(s)	230, 285, 464, 517
TspGWI	ACGGA	1 cut(s)	82
VneI	GTGCAC	1 cut(s)	534
VspI	ATTAAT	1 cut(s)	474
XceI	RCATGY	2 cut(s)	257, 429
XspI	CTAG	2 cut(s)	84, 122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.