Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001212

Physical Location & Seq

Genomic Coordinates Forward (+)

41709642 .. 41710022

Gene Structure 381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG216900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGATGAAGATGAATGGTCTAGTTGGAACAAAATAGGTGATATCGTGCTTCATATTGAGCTACCTCGTTGGGCTGATATCATGGTTATTGCCCCATTATCAGCAAACACCCTAGCCAATATTGCCGGCGGTTTTTGTGACAACCTACTCACCTGTGCTGTGCGAGCATGGGACTACAACAAGCCTTTGTTTATTGCACCAGCCATGAACACCTTGATGTGGAAGAATCCCTTCACAGAGCGACATGTCATGTCCATTGATGAACTTGGAGTTTCACTCATCCCACCTGTCTCAAAGAGGCTGGCTTGTGGGGATTACGGGAATGGTGCAATGGCTGAGCCTTCTGTGATCTCTTCTACCGTAAGACTATTCTATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004633 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0010181 GO:0015936 GO:0015937 GO:0016829 GO:0016830 GO:0016831 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032553 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0036094 GO:0042538 GO:0043167 GO:0043168 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0048037 GO:0050662 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0097159 GO:0097367 GO:1901135 GO:1901137 GO:1901265 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00770 ko01100 map00770 map01100

Pfam Domains

Protein Families

Flavoprotein

Protein Analysis

126

Amino Acids

14.03

Weight (kDa)

4.76

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Flavoprotein	PF02441	16 - 119	1.7e-19	Flavoprotein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001212)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48605 AT3G18030
fragaria_vesca	FvH4_5g07250 FvH4_5g07250 FvH4_5g07250
malus_domestica	MD06G1157900.v1.1 MD14G1015700.v1.1 MD14G1164500.v1.1
prunus_persica	Prupe.5G158000_v2.0.a1 Prupe.5G158000_v2.0.a1 Prupe.7G044900_v2.0.a1 Prupe.7G117800_v2.0.a1 Prupe.7G117900_v2.0.a1
pyrus_communis	pycom06g14100 pycom14g01340 pycom14g13720
rosa_chinensis	RchiOBHm_Chr3g0460241 RchiOBHm_Chr3g0460251 RchiOBHm_Chr4g0419061 RchiOBHm_Chr7g0191381
rosa_laevigata	RLG00000004458 RLG00000004460 RLG00000007828 RLG00000025032 RLG00000025033
rosa_multiflora	Rmu_sc0000449.1_g000021 Rmu_sc0000449.1_g000042 Rmu_sc0000744.1_g000068 Rmu_sc0002661.1_g000004 Rmu_sc0003763.1_g000003
rosa_roxburghii	Rroxscaffold_157G00438330 Rroxscaffold_157G00438340 Rroxscaffold_3G00263860 Rroxscaffold_3G00263870 Rroxscaffold_5G00362120 Rroxscaffold_6G00419690 Rroxscaffold_6G00419710
rosa_rugosa	Rorug04G0157000 Rorug06G0510300 Rorug06G0510400
rosa_samantha	Rh3AG098800 Rh3BG102100 Rh3BG102600 Rh3CG104200 Rh3CG104400 Rh3DG103300 Rh3DG103600 Rh4BG219900 Rh4DG216900 Rh7AG117900 Rh7BG119900 Rh7CG122800 Rh7DG120900
rosa_wichuraiana	Rw3G008360 Rw3G008380 Rw4G018670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	129
AfiI	CCNNNNNNNGG	1 cut(s)	219
AflIII	ACRYGT	1 cut(s)	244
AluBI	AGCT	1 cut(s)	61
AluI	AGCT	1 cut(s)	61
Alw26I	GTCTC	1 cut(s)	295
Asp700I	GAANNNNTTC	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	50, 142
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	2 cut(s)	21, 113
BlpI	GCTNAGC	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	261, 293
Bpu1102I	GCTNAGC	1 cut(s)	336
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse118I	RCCGGY	1 cut(s)	125
Bse3DI	GCAATG	1 cut(s)	336
BseGI	GGATG	2 cut(s)	10, 279
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	185
Bsp143I	GATC	1 cut(s)	348
Bsp1720I	GCTNAGC	1 cut(s)	336
BspACI	CCGC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	125
BssAI	RCCGGY	1 cut(s)	125
BssMI	GATC	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	1 cut(s)	358
BstC8I	GCNNGC	3 cut(s)	127, 165, 303
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	10, 279
BstKTI	GATC	1 cut(s)	351
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	348
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 164
BstNSI	RCATGY	1 cut(s)	248
BtsCI	GGATG	2 cut(s)	10, 279
Cac8I	GCNNGC	3 cut(s)	127, 165, 303
Cfr10I	RCCGGY	1 cut(s)	125
CviAII	CATG	5 cut(s)	82, 168, 205, 245, 250
CviJI	RGCY	9 cut(s)	61, 74, 116, 184, 203, 301, 305, 335, 340
CviKI_1	RGCY	9 cut(s)	61, 74, 116, 184, 203, 301, 305, 335, 340
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	1 cut(s)	350
DpnII	GATC	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	358
Eco32I	GATATC	2 cut(s)	43, 79
EcoRV	GATATC	2 cut(s)	43, 79
FaeI	CATG	5 cut(s)	85, 171, 208, 248, 253
FaiI	YATR	7 cut(s)	54, 83, 169, 206, 246, 251, 375
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	5 cut(s)	81, 167, 204, 244, 249
FokI	GGATG	2 cut(s)	17, 266
FspBI	CTAG	2 cut(s)	21, 113
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	5 cut(s)	85, 171, 208, 248, 253
HinfI	GANTC	1 cut(s)	226
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	2 cut(s)	50, 142
HpyAV	CCTTC	2 cut(s)	241, 351
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4V	TGCA	2 cut(s)	197, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 164
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	5 cut(s)	85, 171, 208, 248, 253
KroI	GCCGGC	1 cut(s)	125
KroNI	GCCGGC	1 cut(s)	127
Kzo9I	GATC	1 cut(s)	348
LpnPI	CCDG	5 cut(s)	139, 166, 213, 287, 300
MaeI	CTAG	2 cut(s)	21, 113
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	1 cut(s)	350
MboI	GATC	1 cut(s)	348
MboII	GAAGA	3 cut(s)	20, 235, 345
MmeI	TCCRAC	1 cut(s)	5
MnlI	CCTC	2 cut(s)	75, 291
MroNI	GCCGGC	1 cut(s)	125
MroXI	GAANNNNTTC	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	215
MspI	CCGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	2 cut(s)	122, 164
NaeI	GCCGGC	1 cut(s)	127
NdeII	GATC	1 cut(s)	348
NgoMIV	GCCGGC	1 cut(s)	125
NlaIII	CATG	5 cut(s)	85, 171, 208, 248, 253
NmuCI	GTSAC	1 cut(s)	137
NspI	RCATGY	1 cut(s)	248
PciI	ACATGT	1 cut(s)	244
PdiI	GCCGGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	226
PscI	ACATGT	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	215
Sau3AI	GATC	1 cut(s)	348
SetI	ASST	7 cut(s)	40, 63, 67, 147, 155, 215, 289
SmiMI	CAYNNNNRTG	1 cut(s)	215
SsiI	CCGC	1 cut(s)	129
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	2 cut(s)	21, 113
TaaI	ACNGT	1 cut(s)	361
TfiI	GAWTC	1 cut(s)	226
TseFI	GTSAC	1 cut(s)	137
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	5 cut(s)	21, 27, 41, 221, 276
XceI	RCATGY	1 cut(s)	248
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	2 cut(s)	21, 113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.