Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0015722

Physical Location & Seq

Genomic Coordinates Forward (+)

16818717 .. 16819380

Gene Structure 664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGATGCTGACTGCTTTGTTGGATTGGTGCTTGTACTATAGAAACTTAGATGTGCTTACCCCCTTTTCGTTGACATCCACGGATACAATATTTGTTAGAGCTCATGAGACAAGAATGGATTGTGTGAGAGCTGTAATTGTTGGGGCGGAGGGTACTCCTTACCATGATGGTCTCTTCTTCTTTGATGTTTGCTTCCCCAGTGTTATATCTGTTTACATCTTTGGCCTAACTGGGAACTCCGTTATGCTGAATGTCTACTACCACTCTGGTGGCCTTCGATTTAATCCAAATTTGTACAAATGTGGAAAAGTATGCCTTATTCTTGGTTCTGGAAAAACCAAATTGCTTGTGTATTTGGTGGTTTTCTGCATTTTTTGCATCTTCATTTTCCTACTTTTGTGGTCTGCATTCATTTTACTGGAACTACCCTGCTTCTTTCTCATGGTCCTTAAACATGCGCAAGTTTGTATTTTTCTGATGGATTATACCATTGGGAACTTAGTTACTTTTATTTTTTATATTTGTTTGTTGGGTTTGTTGTTTTTGGAAAATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

186

Amino Acids

21.2

Weight (kDa)

6.38

Isoelectric Point (pI)

17.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015722)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g18330 pycom10g26420 pycom13g04680 pycom14g14050
rosa_laevigata	RLG00000024517 RLG00000030191
rosa_multiflora	Rmu_sc0003130.1_g000014 Rmu_sc0003706.1_g000002 Rmu_sc0004283.1_g000045 Rmu_sc0007734.1_g000014
rosa_roxburghii	Rroxscaffold_2G00083090 Rroxscaffold_6G00394300
rosa_rugosa	Rorug01G0156200.1 Rorug01G0407800
rosa_samantha	Rh4CG277800 Rh4DG262800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	459
AccI	GTMKAC	1 cut(s)	255
AciI	CCGC	1 cut(s)	146
AcsI	RAATTY	1 cut(s)	289
AfaI	GTAC	3 cut(s)	35, 154, 296
AleI	CACNNNNGTG	1 cut(s)	267
AluBI	AGCT	2 cut(s)	101, 131
AluI	AGCT	2 cut(s)	101, 131
Alw21I	GWGCWC	1 cut(s)	103
Alw26I	GTCTC	2 cut(s)	101, 176
AoxI	GGCC	2 cut(s)	223, 271
ApoI	RAATTY	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	460
AspS9I	GGNCC	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	103
Bbv12I	GWGCWC	1 cut(s)	103
BccI	CCATC	2 cut(s)	161, 472
BciVI	GTATCC	1 cut(s)	76
BcoDI	GTCTC	2 cut(s)	101, 176
BfmI	CTRYAG	1 cut(s)	37
BfuI	GTATCC	1 cut(s)	76
Bme18I	GGWCC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	445
BmrI	ACTGGG	2 cut(s)	192, 240
BmsI	GCATC	1 cut(s)	387
BmuI	ACTGGG	2 cut(s)	192, 240
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	78
Bse1I	ACTGG	3 cut(s)	198, 235, 423
BseDI	CCNNGG	1 cut(s)	78
BseGI	GGATG	1 cut(s)	74
BseNI	ACTGG	3 cut(s)	198, 235, 423
BshFI	GGCC	2 cut(s)	225, 273
BsiHKAI	GWGCWC	1 cut(s)	103
BsmAI	GTCTC	2 cut(s)	101, 176
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	2 cut(s)	225, 273
Bso31I	GGTCTC	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	103
Bsp1407I	TGTACA	1 cut(s)	294
BspACI	CCGC	1 cut(s)	146
BspANI	GGCC	2 cut(s)	225, 273
BspHI	TCATGA	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	176
BsrGI	TGTACA	1 cut(s)	294
BsrI	ACTGG	3 cut(s)	198, 235, 423
BssECI	CCNNGG	1 cut(s)	78
Bst6I	CTCTTC	1 cut(s)	179
BstAPI	GCANNNNNTGC	1 cut(s)	375
BstAUI	TGTACA	1 cut(s)	294
BstDEI	CTNAG	2 cut(s)	46, 499
BstDSI	CCRYGG	1 cut(s)	78
BstF5I	GGATG	1 cut(s)	74
BstHHI	GCGC	1 cut(s)	460
BstMAI	GTCTC	2 cut(s)	101, 176
BstMWI	GCNNNNNNNGC	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	458
BstSFI	CTRYAG	1 cut(s)	37
BstXI	CCANNNNNNTGG	1 cut(s)	269
BsuI	GTATCC	1 cut(s)	76
BsuRI	GGCC	2 cut(s)	225, 273
BtgI	CCRYGG	1 cut(s)	78
BtsCI	GGATG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	205
CciI	TCATGA	1 cut(s)	103
CfoI	GCGC	1 cut(s)	460
Cfr13I	GGNCC	1 cut(s)	445
Csp6I	GTAC	3 cut(s)	34, 153, 295
CviAII	CATG	4 cut(s)	104, 164, 442, 455
CviJI	RGCY	4 cut(s)	101, 131, 225, 273
CviKI_1	RGCY	4 cut(s)	101, 131, 225, 273
CviQI	GTAC	3 cut(s)	34, 153, 295
DdeI	CTNAG	2 cut(s)	46, 499
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
EciI	GGCGGA	1 cut(s)	161
Ecl136II	GAGCTC	1 cut(s)	101
Eco24I	GRGCYC	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	445
Eco53kI	GAGCTC	1 cut(s)	101
EcoICRI	GAGCTC	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	103
FaeI	CATG	4 cut(s)	107, 167, 445, 458
FalI	AAGNNNNNCTT	2 cut(s)	300, 332
FatI	CATG	4 cut(s)	103, 163, 441, 454
FblI	GTMKAC	1 cut(s)	255
FokI	GGATG	1 cut(s)	61
FriOI	GRGCYC	1 cut(s)	103
FspI	TGCGCA	1 cut(s)	459
GlaI	GCGC	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	225, 273
HhaI	GCGC	1 cut(s)	460
Hin1II	CATG	4 cut(s)	107, 167, 445, 458
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
Hpy166II	GTNNAC	3 cut(s)	72, 214, 256
Hpy188I	TCNGA	1 cut(s)	477
Hpy188III	TCNNGA	2 cut(s)	104, 330
Hpy8I	GTNNAC	3 cut(s)	72, 214, 256
HpyAV	CCTTC	1 cut(s)	284
HpyCH4V	TGCA	3 cut(s)	369, 378, 407
HpyF10VI	GCNNNNNNNGC	1 cut(s)	375
HpyF3I	CTNAG	2 cut(s)	46, 499
Hsp92II	CATG	4 cut(s)	107, 167, 445, 458
HspAI	GCGC	1 cut(s)	458
LpnPI	CCDG	6 cut(s)	211, 216, 252, 315, 404, 442
LweI	GCATC	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	502
MboII	GAAGA	3 cut(s)	166, 169, 373
MhlI	GDGCHC	1 cut(s)	103
MluCI	AATT	4 cut(s)	135, 289, 341, 550
MnlI	CCTC	1 cut(s)	142
MseI	TTAA	2 cut(s)	282, 450
MslI	CAYNNNNRTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	407
MwoI	GCNNNNNNNGC	1 cut(s)	375
NlaIII	CATG	4 cut(s)	107, 167, 445, 458
NsbI	TGCGCA	1 cut(s)	459
NspI	RCATGY	1 cut(s)	458
OliI	CACNNNNGTG	1 cut(s)	267
PagI	TCATGA	1 cut(s)	103
PctI	GAATGC	1 cut(s)	407
Psp124BI	GAGCTC	1 cut(s)	103
PspPI	GGNCC	1 cut(s)	445
RsaI	GTAC	3 cut(s)	35, 154, 296
RsaNI	GTAC	3 cut(s)	34, 153, 295
RseI	CAYNNNNRTG	1 cut(s)	267
SacI	GAGCTC	1 cut(s)	103
SaqAI	TTAA	2 cut(s)	282, 450
Sau96I	GGNCC	1 cut(s)	445
SduI	GDGCHC	1 cut(s)	103
SetI	ASST	2 cut(s)	103, 133
SfaNI	GCATC	1 cut(s)	387
SfcI	CTRYAG	1 cut(s)	37
SinI	GGWCC	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	267
Sse9I	AATT	4 cut(s)	135, 289, 341, 550
SsiI	CCGC	1 cut(s)	146
SspI	AATATT	1 cut(s)	90
SstI	GAGCTC	1 cut(s)	103
TaqI	TCGA	1 cut(s)	277
TasI	AATT	4 cut(s)	135, 289, 341, 550
TatI	WGTACW	2 cut(s)	33, 294
Tru1I	TTAA	2 cut(s)	282, 450
Tru9I	TTAA	2 cut(s)	282, 450
TscAI	CASTG	1 cut(s)	205
TspDTI	ATGAA	2 cut(s)	373, 400
TspGWI	ACGGA	2 cut(s)	95, 229
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	445
XapI	RAATTY	1 cut(s)	289
XceI	RCATGY	1 cut(s)	458
XmiI	GTMKAC	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.