Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0010667

Physical Location & Seq

Genomic Coordinates Reverse (-)

17924845 .. 17925218

Gene Structure 374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGATGCACAGCTTCCAGCCATATGCCGCAGCCTCGGCTCGCTTCCGCAACTTCTCGACCCCATTTTCCCTCAGCAAGAAGATCCCGTGGTGGTACCAGATCCTCGACCCAGGATCCGAACGCGTGACCCAATGGAACCACATCTTCTTTGTCATATGCATCGTCGGCCTCTTCCTCGACCCCCTCTATTTCTTCTTGCCCACCACGGCCAGCGACCAAGTTGCTTGCATGCAGATCGACATGGGCCTTGGCATCTTGGTCACCTTTCTCCGTACGGGTTTTTGGGCGGGGCCAGCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

101

Amino Acids

11.49

Weight (kDa)

8.77

Isoelectric Point (pI)

37.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48010
fragaria_vesca	FvH4_5g05660
malus_domestica	MD06G1177300.v1.1 MD14G1183500.v1.1
prunus_persica	Prupe.5G176000_v2.0.a1 Prupe.5G176000_v2.0.a1
pyrus_communis	pycom14g15260
rosa_chinensis	RchiOBHm_Chr7g0193151
rosa_laevigata	RLG00000004292
rosa_multiflora	Rmu_co8354259.1_g000001 Rmu_co8396983.1_g000001 Rmu_ssc0000092.1_g000037
rosa_roxburghii	Rroxscaffold_3G00262340
rosa_rugosa	Rorug07G0008000 Rorug07G0008100
rosa_samantha	Rh7AG133100 Rh7BG134200 Rh7CG137000 Rh7DG135000
rosa_wichuraiana	Rw7G011380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	93
AccB1I	GGYRCC	1 cut(s)	93
AccII	CGCG	1 cut(s)	123
AciI	CCGC	3 cut(s)	27, 46, 287
AclWI	GGATC	4 cut(s)	76, 94, 108, 121
AcoI	YGGCCR	1 cut(s)	207
AfaI	GTAC	2 cut(s)	95, 274
AflIII	ACRYGT	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	2 cut(s)	12, 296
AluI	AGCT	2 cut(s)	12, 296
AlwI	GGATC	4 cut(s)	76, 94, 108, 121
AoxI	GGCC	4 cut(s)	166, 207, 244, 290
ApeKI	GCWGC	1 cut(s)	29
Asp718I	GGTACC	1 cut(s)	93
AspS9I	GGNCC	2 cut(s)	244, 290
AsuHPI	GGTGA	1 cut(s)	253
BamHI	GGATCC	1 cut(s)	113
BanI	GGYRCC	1 cut(s)	93
BbvCI	CCTCAGC	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	41
BceAI	ACGGC	1 cut(s)	222
BcgI	CGANNNNNNTGC	4 cut(s)	203, 217, 237, 251
BciT130I	CCWGG	1 cut(s)	111
BisI	GCNGC	2 cut(s)	27, 30
BlsI	GCNGC	2 cut(s)	28, 31
Bme1390I	CCNGG	1 cut(s)	111
BmgT120I	GGNCC	2 cut(s)	244, 290
BmiI	GGNNCC	4 cut(s)	95, 115, 137, 291
BmrFI	CCNGG	1 cut(s)	111
BmsI	GCATC	2 cut(s)	168, 261
Bpu10I	CCTNAGC	1 cut(s)	71
BsaJI	CCNNGG	5 cut(s)	33, 86, 109, 204, 247
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	5 cut(s)	33, 86, 109, 204, 247
BseMII	CTCAG	1 cut(s)	85
BseXI	GCAGC	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	123
BshFI	GGCC	4 cut(s)	168, 209, 246, 292
BshNI	GGYRCC	1 cut(s)	93
BsiWI	CGTACG	1 cut(s)	272
BsnI	GGCC	4 cut(s)	168, 209, 246, 292
Bsp143I	GATC	4 cut(s)	81, 99, 113, 234
BspACI	CCGC	3 cut(s)	27, 46, 287
BspANI	GGCC	4 cut(s)	168, 209, 246, 292
BspCNI	CTCAG	1 cut(s)	84
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	4 cut(s)	95, 115, 137, 291
BspPI	GGATC	4 cut(s)	76, 94, 108, 121
BspT107I	GGYRCC	1 cut(s)	93
BssECI	CCNNGG	5 cut(s)	33, 86, 109, 204, 247
BssMI	GATC	4 cut(s)	81, 99, 113, 234
BssT1I	CCWWGG	1 cut(s)	247
Bst2UI	CCWGG	1 cut(s)	111
Bst6I	CTCTTC	1 cut(s)	176
BstC8I	GCNNGC	5 cut(s)	40, 211, 226, 230, 294
BstDEI	CTNAG	1 cut(s)	71
BstDSI	CCRYGG	2 cut(s)	86, 204
BstEII	GGTNACC	1 cut(s)	259
BstFNI	CGCG	1 cut(s)	123
BstKTI	GATC	4 cut(s)	84, 102, 116, 237
BstMBI	GATC	4 cut(s)	81, 99, 113, 234
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 165, 293
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	232
BstPI	GGTNACC	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	1 cut(s)	41
BstX2I	RGATCY	3 cut(s)	81, 99, 113
BstYI	RGATCY	3 cut(s)	81, 99, 113
BsuRI	GGCC	4 cut(s)	168, 209, 246, 292
BtgI	CCRYGG	2 cut(s)	86, 204
Cac8I	GCNNGC	5 cut(s)	40, 211, 226, 230, 294
Cfr13I	GGNCC	2 cut(s)	244, 290
Csp6I	GTAC	2 cut(s)	94, 273
CviAII	CATG	2 cut(s)	229, 241
CviJI	RGCY	9 cut(s)	12, 19, 32, 38, 168, 209, 246, 292, 296
CviKI_1	RGCY	9 cut(s)	12, 19, 32, 38, 168, 209, 246, 292, 296
CviQI	GTAC	2 cut(s)	94, 273
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	4 cut(s)	83, 101, 115, 236
DpnII	GATC	4 cut(s)	81, 99, 113, 234
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	247
Eco91I	GGTNACC	1 cut(s)	259
EcoO65I	GGTNACC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	2 cut(s)	232, 244
FaiI	YATR	6 cut(s)	22, 24, 155, 157, 230, 242
FatI	CATG	2 cut(s)	228, 240
FauI	CCCGC	1 cut(s)	280
FauNDI	CATATG	2 cut(s)	22, 155
Fnu4HI	GCNGC	2 cut(s)	27, 30
Fsp4HI	GCNGC	2 cut(s)	27, 30
GluI	GCNGC	2 cut(s)	27, 30
HaeIII	GGCC	4 cut(s)	168, 209, 246, 292
Hin1II	CATG	2 cut(s)	232, 244
HphI	GGTGA	1 cut(s)	253
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	55
Hpy99I	CGWCG	1 cut(s)	167
HpyCH4V	TGCA	4 cut(s)	7, 159, 228, 232
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 165, 293
HpyF3I	CTNAG	1 cut(s)	71
Hsp92II	CATG	2 cut(s)	232, 244
KpnI	GGTACC	1 cut(s)	97
Kzo9I	GATC	4 cut(s)	81, 99, 113, 234
LpnPI	CCDG	5 cut(s)	29, 96, 110, 123, 223
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	2 cut(s)	168, 261
MaeIII	GTNAC	2 cut(s)	124, 259
MalI	GATC	4 cut(s)	83, 101, 115, 236
MboI	GATC	4 cut(s)	81, 99, 113, 234
MboII	GAAGA	4 cut(s)	91, 136, 163, 184
MflI	RGATCY	3 cut(s)	81, 99, 113
MluI	ACGCGT	1 cut(s)	121
MnlI	CCTC	6 cut(s)	43, 80, 113, 179, 185, 194
Mph1103I	ATGCAT	1 cut(s)	161
MseI	TTAA	1 cut(s)	301
MspR9I	CCNGG	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	111
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	3 cut(s)	35, 165, 293
NdeI	CATATG	2 cut(s)	22, 155
NdeII	GATC	4 cut(s)	81, 99, 113, 234
NlaIII	CATG	2 cut(s)	232, 244
NlaIV	GGNNCC	4 cut(s)	95, 115, 137, 291
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	2 cut(s)	124, 259
NsiI	ATGCAT	1 cut(s)	161
NspI	RCATGY	1 cut(s)	232
PaeI	GCATGC	1 cut(s)	232
Pfl23II	CGTACG	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	28, 31
Psp6I	CCWGG	1 cut(s)	109
PspEI	GGTNACC	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	109
PspLI	CGTACG	1 cut(s)	272
PspN4I	GGNNCC	4 cut(s)	95, 115, 137, 291
PspPI	GGNCC	2 cut(s)	244, 290
PsuI	RGATCY	3 cut(s)	81, 99, 113
RsaI	GTAC	2 cut(s)	95, 274
RsaNI	GTAC	2 cut(s)	94, 273
SaqAI	TTAA	1 cut(s)	301
SatI	GCNGC	2 cut(s)	27, 30
Sau3AI	GATC	4 cut(s)	81, 99, 113, 234
Sau96I	GGNCC	2 cut(s)	244, 290
ScrFI	CCNGG	1 cut(s)	111
SetI	ASST	3 cut(s)	14, 266, 298
SfaNI	GCATC	2 cut(s)	168, 261
SphI	GCATGC	1 cut(s)	232
SsiI	CCGC	3 cut(s)	27, 46, 287
StyD4I	CCNGG	1 cut(s)	109
StyI	CCWWGG	1 cut(s)	247
TaqI	TCGA	4 cut(s)	56, 105, 177, 237
TauI	GCSGC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	301
Tru9I	TTAA	1 cut(s)	301
TseFI	GTSAC	2 cut(s)	124, 259
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	2 cut(s)	124, 259
TspGWI	ACGGA	1 cut(s)	260
XceI	RCATGY	1 cut(s)	232
Zsp2I	ATGCAT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.