Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0010667

Physical Location & Seq

Genomic Coordinates Forward (+)

10678895 .. 10683089

Gene Structure 4195 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G011380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2172 bp

ATGCACGTGCAAGTTATGAATGATCGACGTCAAGATTTGGCTCATCTGAGTTGTCTCCACTTCCACCCCTACACGGCGGCCTCGGCCCGCTTCCGGCAAATCTCGGTGCCCTTCAACCTGCGCAAGACAAAGCCACGGTGGTCGGAGATCTTGGACCCGGGATCCGAAACAGTGACACGGTGGAACTACATCTTCTTCGTGATCTGCATCATGGGCCTCTTCCTCGATCCCCTTTTCTTCTTCTTACCCCTCATCGGCGGAAAAGCCTGCATGGAGACCGACCTCCAAATCAGCATCTACGTCACCTCCATCCGCACAATCGCCGACTTGTTCTACATCTTCCACATTATCATCAAGTTTCGTATTGCCTTTATTGCCCCTGGCTCTAGGGTTTTCGGCCGCGGCCAGCTAGTTAAGGACCCCTGGGCCATTGCCTCGCGCTACCTCAAAAAGGACTTCTCCATTGACCTAGCCGCCTGTCTACCACTCCCCCAGATTATGATTTGGTTTGTGATTCCAGCGACGAGAAACTCGACAGCTGCTTATACTAATCATACACTTTCCTTGATCGTTCTCATTCAATACATCCCCCGATTTATTCAGCTTTTCCCTCTAAACCGGCGGATTGCTAAGAACACTGGTGTTGTGGCCAAGACTGCTTGGTCAGGGGCAGTGTACAATCTTATTCTTTTTGCCCTAACTGCACATATTGTTGGATCTTCGTGGTATGTGTTGTCCATTAAACGGCAGTACGAGTGTTGGAAACAGGAATGTGGCAAGGAACATAATGGGACACATTCTCCATCCTGTAATCTTGAGTTTCTTGATTGTAAAACTACAAATAATCGTGAACGCCAAGCTTGGTTGGAGAAAACAAACGTGAATGAGAACTGCGATGCTATAAATGATGAGGGAAAATTTCAGTTTGGAATGTTTAAAGAGGCATTCAAAAATGACGTCGCTTCTGCACCCTTCGTTAGTAAATATTTCTATTGCCTTTGGTGGGGTATGAGAAATTTATGTGCATATGGACAAGATATTGAAGTAAGCACTATGGTTGGTGAAACCTCGTTTTGCATTACCATTGCGTCAATTGGCCTCGTCCAGTTTTCACATCTCATGAGTCAGATTCAGACCTTTCTGCAATCTACGACGGCTAGACTTGAAGAGTGGAGGGTCAAAAGAAGAGACACAGAGGAGTGGATGAGGCACCGTCAACTCCCTCCAGAATTGCAAGAACGTGTGCGTCGGTTTGTTCAATATCAGTGGATTGCCACAAGAGGTGTTGATGAAAAATCCATCTTAAATTCCCTGCCTTTGGATATACGACGTCAAATTCAAAGGCATCTATGCCTTGCCCATGTTCGCCGAGTTCCCTTCTTCGCACAAATGGATGATCAGCTCTTGGACGCCATATGCGAACGCCTCAAGTCATCCTTAAATACCAGAGACACACACATCTTTCGGGAGGGTGCTCCGGTGAGTGAGATGCTTTTCATTGTCAGAGGGCAACTCGAAAGCTCCACGACTGATGGTGGAAGGACAGGATTCTTCAACTCCATCACCCTAAGAGCCGGTGACTTCTGTGGTGAAGAGTTGCTGACATGGGCCTTAATGCCTTCATCCAGTCTAAACCTTCCGGTCTCAACTCGAACTGTGAAGTCCCTCACTGAAGTCGAGGCATTTGCACTCCGAGCTGAAGACCTCAAGTATGTTGCGAGTCAATTTAAGCGCCTTCACAGCAAAAAACTGCAGCACGCATTTAGGTACTACTCCCACCAGTGGAGGACTTGGGGAGCTTGTTATATACAAGTTGCCTGGAGACGATACAAAAAGAGGAAGTTGGCGTTGGATTTGTTCAGGGAGGAGGAGTACTATTACACACATGTTTTGGACCAAGACCCTGACTATAACAATGGATCAACTAGTGGTGCAGACGACGATGACGACGACAACGACGATGAAGGTCCAACTAAGACCTCATCGCTGCGTCGTATGGCAGAGCAATTGCACATTCCACTCGGGCCTGCAATTTTGGCTTCCAAGTTTGCTGCAACCACCAAAAGAGGACTTCGGAAGGTGGCAACACGGCTTGAGCGTGAAACTAGCAGTGCCAAAATGCCCAAAAAGTTGTTTAAGCCGAACGAGCCAGATTTCTCAAAAGATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

723

Amino Acids

83.62

Weight (kDa)

9.15

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ion_trans	PF00520	61 - 387	5.2e-12	Ion transport protein
cNMP_binding	PF00027	484 - 572	5e-06	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48010
fragaria_vesca	FvH4_5g05660
malus_domestica	MD06G1177300.v1.1 MD14G1183500.v1.1
prunus_persica	Prupe.5G176000_v2.0.a1 Prupe.5G176000_v2.0.a1
pyrus_communis	pycom14g15260
rosa_chinensis	RchiOBHm_Chr7g0193151
rosa_laevigata	RLG00000004292
rosa_multiflora	Rmu_co8354259.1_g000001 Rmu_co8396983.1_g000001 Rmu_ssc0000092.1_g000037
rosa_roxburghii	Rroxscaffold_3G00262340
rosa_rugosa	Rorug07G0008000 Rorug07G0008100
rosa_samantha	Rh7AG133100 Rh7BG134200 Rh7CG137000 Rh7DG135000
rosa_wichuraiana	Rw7G011380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	661
AatII	GACGTC	3 cut(s)	31, 960, 1333
Acc16I	TGCGCA	1 cut(s)	122
Acc36I	ACCTGC	1 cut(s)	126
AccB1I	GGYRCC	2 cut(s)	106, 1209
AccI	GTMKAC	1 cut(s)	481
AccII	CGCG	2 cut(s)	402, 439
AciI	CCGC	8 cut(s)	77, 88, 258, 313, 400, 402, 474, 622
AclWI	GGATC	5 cut(s)	156, 169, 221, 724, 1927
AcoI	YGGCCR	3 cut(s)	397, 403, 648
AcsI	RAATTY	4 cut(s)	917, 1015, 1306, 1335
AcuI	CTGAAG	2 cut(s)	1692, 1719
AcvI	CACGTG	1 cut(s)	7
AcyI	GRCGYC	4 cut(s)	28, 957, 1330, 1410
AfaI	GTAC	4 cut(s)	677, 752, 1769, 1874
AfiI	CCNNNNNNNGG	8 cut(s)	73, 93, 254, 451, 744, 1003, 1318, 1782
AflIII	ACRYGT	2 cut(s)	1240, 1885
AgsI	TTSAA	8 cut(s)	115, 581, 949, 1043, 1166, 1259, 1340, 1555
AhlI	ACTAGT	1 cut(s)	1925
AjnI	CCWGG	3 cut(s)	379, 422, 1817
AjuI	GAANNNNNNNTTGG	2 cut(s)	1832, 1864
AluBI	AGCT	8 cut(s)	409, 539, 604, 860, 1402, 1521, 1697, 1799
AluI	AGCT	8 cut(s)	409, 539, 604, 860, 1402, 1521, 1697, 1799
Alw21I	GWGCWC	1 cut(s)	1477
Alw26I	GTCTC	6 cut(s)	59, 269, 1182, 1443, 1648, 1816
AlwI	GGATC	5 cut(s)	156, 169, 221, 724, 1927
Ama87I	CYCGRG	2 cut(s)	157, 2021
ApeKI	GCWGC	4 cut(s)	539, 1753, 1987, 2051
ApoI	RAATTY	4 cut(s)	917, 1015, 1306, 1335
ArsI	GACNNNNNNTTYG	2 cut(s)	942, 974
AspLEI	GCGC	3 cut(s)	123, 441, 1734
AspS9I	GGNCC	9 cut(s)	85, 154, 214, 418, 426, 1608, 1894, 1967, 2024
AsuC2I	CCSGG	2 cut(s)	158, 159
AsuHPI	GGTGA	6 cut(s)	295, 1073, 1492, 1555, 1589, 1601
AvaI	CYCGRG	2 cut(s)	157, 2021
AvaII	GGWCC	4 cut(s)	154, 418, 1894, 1967
BaeGI	GKGCMC	1 cut(s)	111
BalI	TGGCCA	1 cut(s)	650
BamHI	GGATCC	1 cut(s)	161
BanI	GGYRCC	2 cut(s)	106, 1209
BbrPI	CACGTG	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	1707
Bbv12I	GWGCWC	1 cut(s)	1477
BbvI	GCAGC	4 cut(s)	526, 1765, 1974, 2038
BccI	CCATC	5 cut(s)	317, 811, 1307, 1526, 1568
BceAI	ACGGC	4 cut(s)	90, 761, 1170, 2105
BcgI	CGANNNNNNTGC	2 cut(s)	1667, 1701
BciT130I	CCWGG	3 cut(s)	381, 424, 1819
BclI	TGATCA	1 cut(s)	1396
BcnI	CCSGG	2 cut(s)	158, 159
BcoDI	GTCTC	6 cut(s)	59, 269, 1182, 1443, 1648, 1816
BcuI	ACTAGT	1 cut(s)	1925
BfaI	CTAG	6 cut(s)	387, 410, 470, 1158, 1926, 2106
BfmI	CTRYAG	1 cut(s)	1751
BfoI	RGCGCY	1 cut(s)	1735
BfuAI	ACCTGC	1 cut(s)	126
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	8 cut(s)	78, 400, 403, 474, 540, 1754, 1988, 2052
BlsI	GCNGC	8 cut(s)	79, 401, 404, 475, 541, 1755, 1989, 2053
BmcAI	AGTACT	1 cut(s)	1874
Bme1390I	CCNGG	5 cut(s)	158, 159, 381, 424, 1819
Bme18I	GGWCC	4 cut(s)	154, 418, 1894, 1967
BmeT110I	CYCGRG	2 cut(s)	157, 2021
BmgT120I	GGNCC	9 cut(s)	85, 154, 214, 418, 426, 1608, 1894, 1967, 2024
BmiI	GGNNCC	5 cut(s)	108, 156, 163, 420, 1211
BmrFI	CCNGG	5 cut(s)	158, 159, 381, 424, 1819
BmsI	GCATC	5 cut(s)	216, 303, 886, 1354, 1479
BpiI	GAAGAC	1 cut(s)	1707
BplI	GAGNNNNNCTC	2 cut(s)	1497, 1529
BpmI	CTGGAG	2 cut(s)	1209, 1840
BpuEI	CTTGAG	4 cut(s)	836, 1412, 1691, 2114
BpuMI	CCSGG	2 cut(s)	158, 159
BsaAI	YACGTR	1 cut(s)	7
BsaBI	GATNNNNATC	1 cut(s)	206
BsaHI	GRCGYC	4 cut(s)	28, 957, 1330, 1410
BsaI	GGTCTC	2 cut(s)	269, 1648
BsaJI	CCNNGG	7 cut(s)	81, 134, 157, 379, 400, 422, 423
BsaWI	WCCGGW	2 cut(s)	1477, 1639
BsaXI	ACNNNNNCTCC	6 cut(s)	290, 320, 784, 814, 1856, 1886
Bsc4I	CCNNNNNNNGG	8 cut(s)	73, 93, 254, 451, 744, 1003, 1318, 1782
Bse118I	RCCGGY	2 cut(s)	618, 1574
Bse1I	ACTGG	4 cut(s)	643, 1105, 1626, 1780
Bse3DI	GCAATG	2 cut(s)	429, 1083
Bse8I	GATNNNNATC	1 cut(s)	206
BseBI	CCWGG	3 cut(s)	381, 424, 1819
BseDI	CCNNGG	7 cut(s)	81, 134, 157, 379, 400, 422, 423
BseGI	GGATG	7 cut(s)	309, 585, 803, 1209, 1399, 1433, 1622
BseJI	GATNNNNATC	1 cut(s)	206
BseLI	CCNNNNNNNGG	8 cut(s)	73, 93, 254, 451, 744, 1003, 1318, 1782
BseMI	GCAATG	2 cut(s)	429, 1083
BseMII	CTCAG	1 cut(s)	38
BseNI	ACTGG	4 cut(s)	643, 1105, 1626, 1780
BseRI	GAGGAG	3 cut(s)	1211, 1880, 1883
BseSI	GKGCMC	1 cut(s)	111
BseX3I	CGGCCG	1 cut(s)	397
BseXI	GCAGC	4 cut(s)	526, 1765, 1974, 2038
BsgI	GTGCAG	3 cut(s)	687, 951, 1953
Bsh1236I	CGCG	2 cut(s)	402, 439
Bsh1285I	CGRYCG	1 cut(s)	400
BshNI	GGYRCC	2 cut(s)	106, 1209
BsiEI	CGRYCG	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	1477
BsiHKCI	CYCGRG	2 cut(s)	157, 2021
BsiSI	CCGG	6 cut(s)	94, 158, 619, 1478, 1575, 1640
BslFI	GGGAC	2 cut(s)	805, 1648
BslI	CCNNNNNNNGG	8 cut(s)	73, 93, 254, 451, 744, 1003, 1318, 1782
BsmAI	GTCTC	6 cut(s)	59, 269, 1182, 1443, 1648, 1816
BsmBI	CGTCTC	1 cut(s)	1816
BsmFI	GGGAC	2 cut(s)	805, 1648
BsmI	GAATGC	1 cut(s)	944
Bso31I	GGTCTC	2 cut(s)	269, 1648
BsoBI	CYCGRG	2 cut(s)	157, 2021
Bsp1286I	GDGCHC	2 cut(s)	111, 1477
Bsp1407I	TGTACA	1 cut(s)	675
Bsp143I	GATC	9 cut(s)	22, 147, 161, 201, 226, 567, 716, 1396, 1919
BspACI	CCGC	8 cut(s)	77, 88, 258, 313, 400, 402, 474, 622
BspCNI	CTCAG	1 cut(s)	39
BspFNI	CGCG	2 cut(s)	402, 439
BspHI	TCATGA	1 cut(s)	1119
BspLI	GGNNCC	5 cut(s)	108, 156, 163, 420, 1211
BspMAI	CTGCAG	1 cut(s)	1755
BspMI	ACCTGC	1 cut(s)	126
BspPI	GGATC	5 cut(s)	156, 169, 221, 724, 1927
BspT107I	GGYRCC	2 cut(s)	106, 1209
BspTNI	GGTCTC	2 cut(s)	269, 1648
BsrDI	GCAATG	2 cut(s)	429, 1083
BsrFI	RCCGGY	2 cut(s)	618, 1574
BsrGI	TGTACA	1 cut(s)	675
BsrI	ACTGG	4 cut(s)	643, 1105, 1626, 1780
BssAI	RCCGGY	2 cut(s)	618, 1574
BssECI	CCNNGG	7 cut(s)	81, 134, 157, 379, 400, 422, 423
BssMI	GATC	9 cut(s)	22, 147, 161, 201, 226, 567, 716, 1396, 1919
BssNI	GRCGYC	4 cut(s)	28, 957, 1330, 1410
Bst2UI	CCWGG	3 cut(s)	381, 424, 1819
Bst4CI	ACNGT	5 cut(s)	138, 172, 180, 1214, 1657
Bst6I	CTCTTC	4 cut(s)	224, 1161, 1180, 1587
BstACI	GRCGYC	4 cut(s)	28, 957, 1330, 1410
BstAUI	TGTACA	1 cut(s)	675
BstBAI	YACGTR	1 cut(s)	7
BstC8I	GCNNGC	5 cut(s)	88, 268, 407, 1758, 2028
BstDEI	CTNAG	4 cut(s)	47, 630, 1568, 1974
BstDSI	CCRYGG	2 cut(s)	134, 400
BstENI	CCTNNNNNAGG	1 cut(s)	449
BstF5I	GGATG	7 cut(s)	309, 585, 803, 1209, 1399, 1433, 1622
BstFNI	CGCG	2 cut(s)	402, 439
BstH2I	RGCGCY	1 cut(s)	1735
BstHHI	GCGC	3 cut(s)	123, 441, 1734
BstKTI	GATC	9 cut(s)	25, 150, 164, 204, 229, 570, 719, 1399, 1922
BstMAI	GTCTC	6 cut(s)	59, 269, 1182, 1443, 1648, 1816
BstMBI	GATC	9 cut(s)	22, 147, 161, 201, 226, 567, 716, 1396, 1919
BstMCI	CGRYCG	1 cut(s)	400
BstMWI	GCNNNNNNNGC	9 cut(s)	83, 213, 374, 656, 701, 1694, 1740, 2036, 2146
BstNI	CCWGG	3 cut(s)	381, 424, 1819
BstNSI	RCATGY	1 cut(s)	1889
BstSCI	CCNGG	5 cut(s)	156, 157, 379, 422, 1817
BstSFI	CTRYAG	1 cut(s)	1751
BstSLI	GKGCMC	1 cut(s)	111
BstUI	CGCG	2 cut(s)	402, 439
BstV1I	GCAGC	4 cut(s)	526, 1765, 1974, 2038
BstV2I	GAAGAC	1 cut(s)	1707
BstX2I	RGATCY	3 cut(s)	147, 161, 716
BstYI	RGATCY	3 cut(s)	147, 161, 716
BstZI	CGGCCG	1 cut(s)	397
BtgI	CCRYGG	2 cut(s)	134, 400
BtgZI	GCGATG	2 cut(s)	909, 1968
BtsCI	GGATG	7 cut(s)	309, 585, 803, 1209, 1399, 1433, 1622
BtsI	GCAGTG	2 cut(s)	678, 2116
BtsIMutI	CAGTG	7 cut(s)	177, 636, 678, 1271, 1668, 1787, 2116
BveI	ACCTGC	1 cut(s)	126
Cac8I	GCNNGC	5 cut(s)	88, 268, 407, 1758, 2028
CciI	TCATGA	1 cut(s)	1119
CfoI	GCGC	3 cut(s)	123, 441, 1734
Cfr10I	RCCGGY	2 cut(s)	618, 1574
Cfr13I	GGNCC	9 cut(s)	85, 154, 214, 418, 426, 1608, 1894, 1967, 2024
Cfr42I	CCGCGG	1 cut(s)	403
Cfr9I	CCCGGG	1 cut(s)	157
CseI	GACGC	4 cut(s)	1077, 1235, 1418, 1979
Csp6I	GTAC	4 cut(s)	676, 751, 1768, 1873
CspCI	CAANNNNNGTGG	2 cut(s)	1247, 1282
CviAII	CATG	6 cut(s)	211, 271, 1120, 1361, 1605, 1886
CviQI	GTAC	4 cut(s)	676, 751, 1768, 1873
DdeI	CTNAG	4 cut(s)	47, 630, 1568, 1974
DpnI	GATC	9 cut(s)	24, 149, 163, 203, 228, 569, 718, 1398, 1921
DpnII	GATC	9 cut(s)	22, 147, 161, 201, 226, 567, 716, 1396, 1919
DraI	TTTAAA	1 cut(s)	937
DrdI	GACNNNNNNGTC	1 cut(s)	661
DseDI	GACNNNNNNGTC	1 cut(s)	661
EaeI	YGGCCR	3 cut(s)	397, 403, 648
EagI	CGGCCG	1 cut(s)	397
Eam1104I	CTCTTC	4 cut(s)	224, 1161, 1180, 1587
EarI	CTCTTC	4 cut(s)	224, 1161, 1180, 1587
EciI	GGCGGA	2 cut(s)	273, 637
EclXI	CGGCCG	1 cut(s)	397
Eco31I	GGTCTC	2 cut(s)	269, 1648
Eco47I	GGWCC	4 cut(s)	154, 418, 1894, 1967
Eco52I	CGGCCG	1 cut(s)	397
Eco57I	CTGAAG	2 cut(s)	1692, 1719
Eco72I	CACGTG	1 cut(s)	7
Eco88I	CYCGRG	2 cut(s)	157, 2021
EcoNI	CCTNNNNNAGG	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	418
EcoRII	CCWGG	3 cut(s)	379, 422, 1817
Esp3I	CGTCTC	1 cut(s)	1816
FaeI	CATG	6 cut(s)	214, 274, 1123, 1364, 1608, 1889
FalI	AAGNNNNNCTT	2 cut(s)	1421, 1453
FaqI	GGGAC	2 cut(s)	805, 1648
FatI	CATG	6 cut(s)	210, 270, 1119, 1360, 1604, 1885
FauI	CCCGC	1 cut(s)	95
FauNDI	CATATG	2 cut(s)	1027, 1415
FbaI	TGATCA	1 cut(s)	1396
FblI	GTMKAC	1 cut(s)	481
Fnu4HI	GCNGC	8 cut(s)	78, 400, 403, 474, 540, 1754, 1988, 2052
FokI	GGATG	7 cut(s)	296, 572, 790, 1216, 1406, 1420, 1609
Fsp4HI	GCNGC	8 cut(s)	78, 400, 403, 474, 540, 1754, 1988, 2052
FspBI	CTAG	6 cut(s)	387, 410, 470, 1158, 1926, 2106
FspI	TGCGCA	1 cut(s)	122
GlaI	GCGC	3 cut(s)	122, 440, 1733
GluI	GCNGC	8 cut(s)	78, 400, 403, 474, 540, 1754, 1988, 2052
GsuI	CTGGAG	2 cut(s)	1209, 1840
HaeII	RGCGCY	1 cut(s)	1735
HapII	CCGG	6 cut(s)	94, 158, 619, 1478, 1575, 1640
HgaI	GACGC	4 cut(s)	1077, 1235, 1418, 1979
HhaI	GCGC	3 cut(s)	123, 441, 1734
Hin1I	GRCGYC	4 cut(s)	28, 957, 1330, 1410
Hin1II	CATG	6 cut(s)	214, 274, 1123, 1364, 1608, 1889
Hin6I	GCGC	3 cut(s)	121, 439, 1732
HinP1I	GCGC	3 cut(s)	121, 439, 1732
HincII	GTYRAC	1 cut(s)	1217
HindII	GTYRAC	1 cut(s)	1217
HindIII	AAGCTT	1 cut(s)	858
HinfI	GANTC	5 cut(s)	514, 1123, 1129, 1548, 1720
HpaII	CCGG	6 cut(s)	94, 158, 619, 1478, 1575, 1640
HphI	GGTGA	6 cut(s)	295, 1073, 1492, 1555, 1589, 1601
Hpy166II	GTNNAC	4 cut(s)	482, 676, 851, 1217
Hpy188I	TCNGA	8 cut(s)	48, 145, 166, 1128, 1134, 1505, 1694, 2076
Hpy188III	TCNNGA	8 cut(s)	32, 199, 815, 824, 848, 1120, 1226, 1466
Hpy8I	GTNNAC	4 cut(s)	482, 676, 851, 1217
HpyAV	CCTTC	9 cut(s)	121, 982, 1387, 1533, 1629, 1646, 1745, 1958, 2071
HpyCH4III	ACNGT	5 cut(s)	138, 172, 180, 1214, 1657
HpyCH4IV	ACGT	7 cut(s)	6, 28, 300, 879, 957, 1240, 1330
HpyF10VI	GCNNNNNNNGC	9 cut(s)	83, 213, 374, 656, 701, 1694, 1740, 2036, 2146
HpyF3I	CTNAG	4 cut(s)	47, 630, 1568, 1974
HpySE526I	ACGT	7 cut(s)	6, 28, 300, 879, 957, 1240, 1330
Hsp92I	GRCGYC	4 cut(s)	28, 957, 1330, 1410
Hsp92II	CATG	6 cut(s)	214, 274, 1123, 1364, 1608, 1889
HspAI	GCGC	3 cut(s)	121, 439, 1732
Ksp22I	TGATCA	1 cut(s)	1396
KspI	CCGCGG	1 cut(s)	403
Kzo9I	GATC	9 cut(s)	22, 147, 161, 201, 226, 567, 716, 1396, 1919
LmnI	GCTCC	3 cut(s)	1480, 1526, 1796
Lsp1109I	GCAGC	4 cut(s)	526, 1765, 1974, 2038
LweI	GCATC	5 cut(s)	216, 303, 886, 1354, 1479
MaeI	CTAG	6 cut(s)	387, 410, 470, 1158, 1926, 2106
MaeII	ACGT	7 cut(s)	6, 28, 300, 879, 957, 1240, 1330
MaeIII	GTNAC	3 cut(s)	172, 301, 1577
MalI	GATC	9 cut(s)	24, 149, 163, 203, 228, 569, 718, 1398, 1921
MboI	GATC	9 cut(s)	22, 147, 161, 201, 226, 567, 716, 1396, 1919
MfeI	CAATTG	2 cut(s)	1092, 2006
MflI	RGATCY	3 cut(s)	147, 161, 716
MhlI	GDGCHC	2 cut(s)	111, 1477
MlsI	TGGCCA	1 cut(s)	650
MluCI	AATT	9 cut(s)	917, 1015, 1092, 1229, 1306, 1335, 1724, 2006, 2031
MluNI	TGGCCA	1 cut(s)	650
MlyI	GAGTC	2 cut(s)	1132, 1729
MmeI	TCCRAC	6 cut(s)	123, 694, 740, 846, 1830, 1994
Mox20I	TGGCCA	1 cut(s)	650
MscI	TGGCCA	1 cut(s)	650
MseI	TTAA	8 cut(s)	414, 741, 936, 1304, 1439, 1613, 1728, 2136
Msp20I	TGGCCA	1 cut(s)	650
MspA1I	CMGCKG	2 cut(s)	402, 539
MspI	CCGG	6 cut(s)	94, 158, 619, 1478, 1575, 1640
MspR9I	CCNGG	5 cut(s)	158, 159, 381, 424, 1819
MunI	CAATTG	2 cut(s)	1092, 2006
Mva1269I	GAATGC	1 cut(s)	944
MvaI	CCWGG	3 cut(s)	381, 424, 1819
MvnI	CGCG	2 cut(s)	402, 439
MwoI	GCNNNNNNNGC	9 cut(s)	83, 213, 374, 656, 701, 1694, 1740, 2036, 2146
NciI	CCSGG	2 cut(s)	158, 159
NdeI	CATATG	2 cut(s)	1027, 1415
NdeII	GATC	9 cut(s)	22, 147, 161, 201, 226, 567, 716, 1396, 1919
NlaIII	CATG	6 cut(s)	214, 274, 1123, 1364, 1608, 1889
NlaIV	GGNNCC	5 cut(s)	108, 156, 163, 420, 1211
NmeAIII	GCCGAG	2 cut(s)	62, 1394
NmuCI	GTSAC	3 cut(s)	172, 301, 1577
NsbI	TGCGCA	1 cut(s)	122
NspI	RCATGY	1 cut(s)	1889
PagI	TCATGA	1 cut(s)	1119
PasI	CCCWGGG	1 cut(s)	423
PciI	ACATGT	1 cut(s)	1885
PcsI	WCGNNNNNNNCGW	7 cut(s)	530, 1416, 1944, 1947, 1953, 1956, 2095
PctI	GAATGC	1 cut(s)	944
PfeI	GAWTC	3 cut(s)	514, 1129, 1548
PkrI	GCNGC	8 cut(s)	79, 401, 404, 475, 541, 1755, 1989, 2053
PleI	GAGTC	2 cut(s)	1131, 1728
PmaCI	CACGTG	1 cut(s)	7
PmlI	CACGTG	1 cut(s)	7
PpsI	GAGTC	2 cut(s)	1131, 1728
Ppu21I	YACGTR	1 cut(s)	7
PpuMI	RGGWCCY	1 cut(s)	418
PscI	ACATGT	1 cut(s)	1885
Psp5II	RGGWCCY	1 cut(s)	418
Psp6I	CCWGG	3 cut(s)	379, 422, 1817
PspCI	CACGTG	1 cut(s)	7
PspGI	CCWGG	3 cut(s)	379, 422, 1817
PspN4I	GGNNCC	5 cut(s)	108, 156, 163, 420, 1211
PspPI	GGNCC	9 cut(s)	85, 154, 214, 418, 426, 1608, 1894, 1967, 2024
PspPPI	RGGWCCY	1 cut(s)	418
PstI	CTGCAG	1 cut(s)	1755
PsuI	RGATCY	3 cut(s)	147, 161, 716
PvuII	CAGCTG	1 cut(s)	539
RsaI	GTAC	4 cut(s)	677, 752, 1769, 1874
RsaNI	GTAC	4 cut(s)	676, 751, 1768, 1873
SacII	CCGCGG	1 cut(s)	403
SaqAI	TTAA	8 cut(s)	414, 741, 936, 1304, 1439, 1613, 1728, 2136
SatI	GCNGC	8 cut(s)	78, 400, 403, 474, 540, 1754, 1988, 2052
Sau3AI	GATC	9 cut(s)	22, 147, 161, 201, 226, 567, 716, 1396, 1919
Sau96I	GGNCC	9 cut(s)	85, 154, 214, 418, 426, 1608, 1894, 1967, 2024
ScaI	AGTACT	1 cut(s)	1874
SchI	GAGTC	2 cut(s)	1132, 1729
ScrFI	CCNGG	5 cut(s)	158, 159, 381, 424, 1819
SduI	GDGCHC	2 cut(s)	111, 1477
SfaNI	GCATC	5 cut(s)	216, 303, 886, 1354, 1479
SfcI	CTRYAG	1 cut(s)	1751
Sfr303I	CCGCGG	1 cut(s)	403
SgrBI	CCGCGG	1 cut(s)	403
SinI	GGWCC	4 cut(s)	154, 418, 1894, 1967
SmaI	CCCGGG	1 cut(s)	159
SmlI	CTYRAG	4 cut(s)	815, 1427, 1706, 2093
SmoI	CTYRAG	4 cut(s)	815, 1427, 1706, 2093
SpeI	ACTAGT	1 cut(s)	1925
Sse9I	AATT	9 cut(s)	917, 1015, 1092, 1229, 1306, 1335, 1724, 2006, 2031
SsiI	CCGC	8 cut(s)	77, 88, 258, 313, 400, 402, 474, 622
SspI	AATATT	1 cut(s)	986
SspMI	CTAG	6 cut(s)	387, 410, 470, 1158, 1926, 2106
StyD4I	CCNGG	5 cut(s)	156, 157, 379, 422, 1817
TaaI	ACNGT	5 cut(s)	138, 172, 180, 1214, 1657
TaiI	ACGT	7 cut(s)	9, 31, 303, 882, 960, 1243, 1333
TaqI	TCGA	6 cut(s)	25, 225, 533, 1515, 1651, 1677
TaqII	GACCGA	1 cut(s)	293
TasI	AATT	9 cut(s)	917, 1015, 1092, 1229, 1306, 1335, 1724, 2006, 2031
TatI	WGTACW	2 cut(s)	675, 1872
TauI	GCSGC	4 cut(s)	80, 402, 405, 476
TfiI	GAWTC	3 cut(s)	514, 1129, 1548
Tru1I	TTAA	8 cut(s)	414, 741, 936, 1304, 1439, 1613, 1728, 2136
Tru9I	TTAA	8 cut(s)	414, 741, 936, 1304, 1439, 1613, 1728, 2136
TscAI	CASTG	7 cut(s)	177, 643, 678, 1271, 1675, 1787, 2116
TseFI	GTSAC	3 cut(s)	172, 301, 1577
TseI	GCWGC	4 cut(s)	539, 1753, 1987, 2051
Tsp45I	GTSAC	3 cut(s)	172, 301, 1577
TspDTI	ATGAA	5 cut(s)	32, 1305, 1486, 1611, 1977
TspMI	CCCGGG	1 cut(s)	157
TspRI	CASTG	7 cut(s)	177, 643, 678, 1271, 1675, 1787, 2116
VpaK11BI	GGWCC	4 cut(s)	154, 418, 1894, 1967
XagI	CCTNNNNNAGG	1 cut(s)	449
XapI	RAATTY	4 cut(s)	917, 1015, 1306, 1335
XceI	RCATGY	1 cut(s)	1889
XmaI	CCCGGG	1 cut(s)	157
XmiI	GTMKAC	1 cut(s)	481
XspI	CTAG	6 cut(s)	387, 410, 470, 1158, 1926, 2106
ZraI	GACGTC	3 cut(s)	29, 958, 1331
ZrmI	AGTACT	1 cut(s)	1874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.