Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8354259.1

Orthogroup ID

OG0010667

Physical Location & Seq

Genomic Coordinates Reverse (-)

148 .. 930

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8354259.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atggatgatcagctcttggacgccatatgcgaacgcctcaagtcatccttaaataccagagacacacacatctttcgggagggtgctccggtgagtgagatgcttttcattgtcagagggcaactcgaaagctccacgactgatggtggaaggacaggattcttcaactccatcaccctaagagccggtgacttctgtggtgaagagttgctgacatgggccttaatgccttcatccagtctaaaccttccggtctcaactcgaactgtgaagtccctcactgaagtcgaggcatttgcactccgagctgaagacctcaagtatgttgcgagtcaatttaagcgccttcacagcaaaaaactgcagcacgcatttaggtactactcccaccagtggaggacttggggagcttgttatatacaagttgcctggagacgatacaaaaagaggaagttggcgttggatttgttcagggaggaggagtactattacacacatgttttggaccaagaccctgactataacaatggatcaactagtggtgcagacgacgatgacgaagacaacgacgatgaaggtccaactaagacctcatcgctgcgtcgtatggcagagcaattgcacattccactcgggcctgcaattttggcttccaagtttgctgcaaccaccaaaagaggacttcggaaggtggcaacacggcttgagcgtgaaactagcagtgccaaaatgcccaaaaagttgtttaagccgaacgagccagatttctcaaaagatagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

260

Amino Acids

29.73

Weight (kDa)

7.71

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48010
fragaria_vesca	FvH4_5g05660
malus_domestica	MD06G1177300.v1.1 MD14G1183500.v1.1
prunus_persica	Prupe.5G176000_v2.0.a1 Prupe.5G176000_v2.0.a1
pyrus_communis	pycom14g15260
rosa_chinensis	RchiOBHm_Chr7g0193151
rosa_laevigata	RLG00000004292
rosa_multiflora	Rmu_co8354259.1_g000001 Rmu_co8396983.1_g000001 Rmu_ssc0000092.1_g000037
rosa_roxburghii	Rroxscaffold_3G00262340
rosa_rugosa	Rorug07G0008000 Rorug07G0008100
rosa_samantha	Rh7AG133100 Rh7BG134200 Rh7CG137000 Rh7DG135000
rosa_wichuraiana	Rw7G011380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	538
AcuI	CTGAAG	2 cut(s)	303, 330
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	2 cut(s)	380, 485
AfiI	CCNNNNNNNGG	1 cut(s)	393
AflIII	ACRYGT	1 cut(s)	496
AgsI	TTSAA	1 cut(s)	166
AhlI	ACTAGT	1 cut(s)	536
AjnI	CCWGG	1 cut(s)	428
AjuI	GAANNNNNNNTTGG	2 cut(s)	443, 475
AluBI	AGCT	4 cut(s)	13, 132, 308, 410
AluI	AGCT	4 cut(s)	13, 132, 308, 410
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	3 cut(s)	54, 259, 427
AlwI	GGATC	1 cut(s)	538
Ama87I	CYCGRG	1 cut(s)	632
AoxI	GGCC	2 cut(s)	219, 635
ApeKI	GCWGC	3 cut(s)	364, 598, 662
AspLEI	GCGC	1 cut(s)	345
AspS9I	GGNCC	4 cut(s)	219, 505, 578, 635
AsuHPI	GGTGA	4 cut(s)	103, 166, 200, 212
AvaI	CYCGRG	1 cut(s)	632
AvaII	GGWCC	2 cut(s)	505, 578
BbsI	GAAGAC	2 cut(s)	318, 567
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	3 cut(s)	376, 585, 649
BccI	CCATC	2 cut(s)	137, 179
BceAI	ACGGC	1 cut(s)	716
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BciT130I	CCWGG	1 cut(s)	430
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	3 cut(s)	54, 259, 427
BcuI	ACTAGT	1 cut(s)	536
BfaI	CTAG	2 cut(s)	537, 717
BfmI	CTRYAG	1 cut(s)	362
BfoI	RGCGCY	1 cut(s)	346
BisI	GCNGC	3 cut(s)	365, 599, 663
BlsI	GCNGC	3 cut(s)	366, 600, 664
BmcAI	AGTACT	1 cut(s)	485
Bme1390I	CCNGG	1 cut(s)	430
Bme18I	GGWCC	2 cut(s)	505, 578
BmeT110I	CYCGRG	1 cut(s)	632
BmgT120I	GGNCC	4 cut(s)	219, 505, 578, 635
BmrFI	CCNGG	1 cut(s)	430
BmsI	GCATC	1 cut(s)	90
BpiI	GAAGAC	2 cut(s)	318, 567
BplI	GAGNNNNNCTC	2 cut(s)	108, 140
BpmI	CTGGAG	1 cut(s)	451
BpuEI	CTTGAG	3 cut(s)	23, 302, 725
BsaHI	GRCGYC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	259
BsaWI	WCCGGW	2 cut(s)	88, 250
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	237, 391
BseBI	CCWGG	1 cut(s)	430
BseGI	GGATG	3 cut(s)	10, 44, 233
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseNI	ACTGG	2 cut(s)	237, 391
BseRI	GAGGAG	2 cut(s)	491, 494
BseXI	GCAGC	3 cut(s)	376, 585, 649
BsgI	GTGCAG	1 cut(s)	564
BshFI	GGCC	2 cut(s)	221, 637
BsiHKAI	GWGCWC	1 cut(s)	88
BsiHKCI	CYCGRG	1 cut(s)	632
BsiSI	CCGG	3 cut(s)	89, 186, 251
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	393
BsmAI	GTCTC	3 cut(s)	54, 259, 427
BsmBI	CGTCTC	1 cut(s)	427
BsmFI	GGGAC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	221, 637
Bso31I	GGTCTC	1 cut(s)	259
BsoBI	CYCGRG	1 cut(s)	632
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	7, 530
BspANI	GGCC	2 cut(s)	221, 637
BspMAI	CTGCAG	1 cut(s)	366
BspPI	GGATC	1 cut(s)	538
BspTNI	GGTCTC	1 cut(s)	259
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	237, 391
BssAI	RCCGGY	1 cut(s)	185
BssMI	GATC	2 cut(s)	7, 530
BssNI	GRCGYC	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	430
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	198
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	369, 639
BstDEI	CTNAG	2 cut(s)	179, 585
BstF5I	GGATG	3 cut(s)	10, 44, 233
BstH2I	RGCGCY	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	345
BstKTI	GATC	2 cut(s)	10, 533
BstMAI	GTCTC	3 cut(s)	54, 259, 427
BstMBI	GATC	2 cut(s)	7, 530
BstMWI	GCNNNNNNNGC	4 cut(s)	305, 351, 647, 757
BstNI	CCWGG	1 cut(s)	430
BstNSI	RCATGY	1 cut(s)	500
BstSCI	CCNGG	1 cut(s)	428
BstSFI	CTRYAG	1 cut(s)	362
BstV1I	GCAGC	3 cut(s)	376, 585, 649
BstV2I	GAAGAC	2 cut(s)	318, 567
BsuRI	GGCC	2 cut(s)	221, 637
BtgZI	GCGATG	1 cut(s)	579
BtsCI	GGATG	3 cut(s)	10, 44, 233
BtsI	GCAGTG	1 cut(s)	727
BtsIMutI	CAGTG	3 cut(s)	279, 398, 727
Cac8I	GCNNGC	2 cut(s)	369, 639
CfoI	GCGC	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	4 cut(s)	219, 505, 578, 635
CseI	GACGC	2 cut(s)	29, 590
Csp6I	GTAC	2 cut(s)	379, 484
CviAII	CATG	2 cut(s)	216, 497
CviQI	GTAC	2 cut(s)	379, 484
DdeI	CTNAG	2 cut(s)	179, 585
DpnI	GATC	2 cut(s)	9, 532
DpnII	GATC	2 cut(s)	7, 530
Eam1104I	CTCTTC	1 cut(s)	198
EarI	CTCTTC	1 cut(s)	198
Eco31I	GGTCTC	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	505, 578
Eco57I	CTGAAG	2 cut(s)	303, 330
Eco88I	CYCGRG	1 cut(s)	632
EcoRII	CCWGG	1 cut(s)	428
Esp3I	CGTCTC	1 cut(s)	427
FaeI	CATG	2 cut(s)	219, 500
FaiI	YATR	9 cut(s)	26, 28, 217, 324, 417, 419, 498, 522, 608
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	2 cut(s)	215, 496
FauNDI	CATATG	1 cut(s)	26
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	3 cut(s)	365, 599, 663
FokI	GGATG	3 cut(s)	17, 31, 220
Fsp4HI	GCNGC	3 cut(s)	365, 599, 663
FspBI	CTAG	2 cut(s)	537, 717
GlaI	GCGC	1 cut(s)	344
GluI	GCNGC	3 cut(s)	365, 599, 663
GsuI	CTGGAG	1 cut(s)	451
HaeII	RGCGCY	1 cut(s)	346
HaeIII	GGCC	2 cut(s)	221, 637
HapII	CCGG	3 cut(s)	89, 186, 251
HgaI	GACGC	2 cut(s)	29, 590
HhaI	GCGC	1 cut(s)	345
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	2 cut(s)	219, 500
Hin6I	GCGC	1 cut(s)	343
HinP1I	GCGC	1 cut(s)	343
HinfI	GANTC	2 cut(s)	159, 331
HpaII	CCGG	3 cut(s)	89, 186, 251
HphI	GGTGA	4 cut(s)	103, 166, 200, 212
Hpy188I	TCNGA	3 cut(s)	116, 305, 687
Hpy188III	TCNNGA	1 cut(s)	77
Hpy99I	CGWCG	3 cut(s)	554, 572, 606
HpyAV	CCTTC	6 cut(s)	144, 240, 257, 356, 569, 682
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	6 cut(s)	299, 364, 545, 622, 641, 665
HpyF10VI	GCNNNNNNNGC	4 cut(s)	305, 351, 647, 757
HpyF3I	CTNAG	2 cut(s)	179, 585
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	219, 500
HspAI	GCGC	1 cut(s)	343
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	7, 530
LmnI	GCTCC	3 cut(s)	91, 137, 407
Lsp1109I	GCAGC	3 cut(s)	376, 585, 649
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	2 cut(s)	537, 717
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	2 cut(s)	9, 532
MboI	GATC	2 cut(s)	7, 530
MboII	GAAGA	4 cut(s)	154, 215, 323, 572
MfeI	CAATTG	1 cut(s)	617
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	3 cut(s)	335, 617, 642
MlyI	GAGTC	1 cut(s)	340
MmeI	TCCRAC	2 cut(s)	441, 605
MseI	TTAA	4 cut(s)	50, 224, 339, 747
MspI	CCGG	3 cut(s)	89, 186, 251
MspR9I	CCNGG	1 cut(s)	430
MunI	CAATTG	1 cut(s)	617
MvaI	CCWGG	1 cut(s)	430
MwoI	GCNNNNNNNGC	4 cut(s)	305, 351, 647, 757
NdeI	CATATG	1 cut(s)	26
NdeII	GATC	2 cut(s)	7, 530
NlaIII	CATG	2 cut(s)	219, 500
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	1 cut(s)	500
PciI	ACATGT	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	4 cut(s)	27, 555, 564, 706
PfeI	GAWTC	1 cut(s)	159
PkrI	GCNGC	3 cut(s)	366, 600, 664
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
PscI	ACATGT	1 cut(s)	496
Psp6I	CCWGG	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	428
PspPI	GGNCC	4 cut(s)	219, 505, 578, 635
PstI	CTGCAG	1 cut(s)	366
RsaI	GTAC	2 cut(s)	380, 485
RsaNI	GTAC	2 cut(s)	379, 484
SaqAI	TTAA	4 cut(s)	50, 224, 339, 747
SatI	GCNGC	3 cut(s)	365, 599, 663
Sau3AI	GATC	2 cut(s)	7, 530
Sau96I	GGNCC	4 cut(s)	219, 505, 578, 635
ScaI	AGTACT	1 cut(s)	485
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	430
SduI	GDGCHC	1 cut(s)	88
SfaNI	GCATC	1 cut(s)	90
SfcI	CTRYAG	1 cut(s)	362
SinI	GGWCC	2 cut(s)	505, 578
SmlI	CTYRAG	3 cut(s)	38, 317, 704
SmoI	CTYRAG	3 cut(s)	38, 317, 704
SpeI	ACTAGT	1 cut(s)	536
Sse9I	AATT	3 cut(s)	335, 617, 642
SspMI	CTAG	2 cut(s)	537, 717
StyD4I	CCNGG	1 cut(s)	428
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	3 cut(s)	126, 262, 288
TasI	AATT	3 cut(s)	335, 617, 642
TatI	WGTACW	1 cut(s)	483
TfiI	GAWTC	1 cut(s)	159
Tru1I	TTAA	4 cut(s)	50, 224, 339, 747
Tru9I	TTAA	4 cut(s)	50, 224, 339, 747
TscAI	CASTG	3 cut(s)	286, 398, 727
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	3 cut(s)	364, 598, 662
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	3 cut(s)	97, 222, 588
TspRI	CASTG	3 cut(s)	286, 398, 727
VpaK11BI	GGWCC	2 cut(s)	505, 578
XceI	RCATGY	1 cut(s)	500
XspI	CTAG	2 cut(s)	537, 717
ZrmI	AGTACT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.