Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010667

Physical Location & Seq

Genomic Coordinates Forward (+)

10684741 .. 10688030

Gene Structure 3290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG133100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGATAGTTAACTGTTGTTGTTCCAAATTGTCAGTGCAGATTGTTGGATCTTCGTGGTATGTGTTGTCCATTAAACGGCAGTACGAGTGTTGGAAACAGGAATGTGGCAAGGAACATAATGGGACACATTCTCCATCCTGTAATCTTGAGTTTCTTGATTGTAAAACTACAAATAATCGTGAACGCCAAGCTTGGTTGGAGAAAACAAACGTGAGTGAGAACTGCGATGCTATAAATGATGAGGGAAAATTTCAGTTTGGAATGTTTAAAGAGGCATTCAAAAATGACGTCGCTTCTGCACCCTTCATTAGTAAATATTTCTATTGCCTTTGGTGGGGTATGAGAAATTTATGTGCATATGGACAAGATATTGAAGTAAGCACTATGGTTGGTGAAACCTCGTTTTGCATTACCATTGCGTCAATTGGCCTCGTCCAGTTTTCACATCTCATGAGTCAGATACAGACCTTTCTGCAATCTACGACGGCTAGACTTGAAGAGTGGAGGGTCAAAAGAAGAGACACAGAGGAGTGGATGAGGCACCGTCAACTCCCTCCAGAATTGCAAGAACGTGTGCGTCGGTTTGTTCAATATCAGTGGATTGCCACAAGAGGTGTTGATGAAAAATCCATCTTAAATTCCCTGCCTTTGGATATACGACGTCAAATTCAAAGGCATCTATGCCTTGCCCATGTTCGCCGAGTTCCCTTCTTCGCACAAATGGATGATCAGCTCTTGGACGCCATATGCGAACGCCTCAAGTCATCCTTAAATACCAGAGACACACACATCTTTCGGGAGGGTGCTCCGGTGAGTGAGATGCTTTTCATTGTCAGAGGGCAACTCGAAAGCTCCACGACTGATGGTGGAAGGACAGGATTCTTCAACTCCATCACTCTAAGAGCCGGTGACTTCTGTGGTGAAGAGTTGCTGACATGGGCCTTAATGCCTTCATCCAGTCTAAACCTTCCGGTCTCAACTCGAACTGTGAAGTCCCTCACTGAAGTCGAGGCATTTGCACTCCGAGCTGAAGACCTCAAGTATGTTGCGAGTCAATTTAAGCACCTTCACAGCAAAAAACTGCAGCACGCATTTAGGTACTACTCCCACCAGTGGAGGACTTGGGGAGCTTGTTATATACAAGTTGCCTGGAGACGATACAAAAAGAGGAAGTTGGCGTTGGATTTGTTAAGGGAGGAGGAGTACTATTACACACATGTTTTGGACCAAGACCCTGACTATAACAATGGATCAACTAGTAGTGCAGACGACGATGACGACGACAACGATGATGAAGGTCCAAGTAAGACCTCATCGCTGCGTCGTATGGCAGAGCAATTGCACATTCCACTCGGGCCTGCAATTTTGGCTTCCAAGTTTGCTGCAACCACCAAAAGAGGACTTCGGAAGGTGGCAACACGGCTTGACCGTGAAACTAGCAGTGCCAAAATGCCCAAAAAGTTGTTTAAGCCGAACGAGCCAGATTTCTCAAAAGATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

500

Amino Acids

57.91

Weight (kDa)

8.4

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	261 - 349	2.9e-06	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010667)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48010
fragaria_vesca	FvH4_5g05660
malus_domestica	MD06G1177300.v1.1 MD14G1183500.v1.1
prunus_persica	Prupe.5G176000_v2.0.a1 Prupe.5G176000_v2.0.a1
pyrus_communis	pycom14g15260
rosa_chinensis	RchiOBHm_Chr7g0193151
rosa_laevigata	RLG00000004292
rosa_multiflora	Rmu_co8354259.1_g000001 Rmu_co8396983.1_g000001 Rmu_ssc0000092.1_g000037
rosa_roxburghii	Rroxscaffold_3G00262340
rosa_rugosa	Rorug07G0008000 Rorug07G0008100
rosa_samantha	Rh7AG133100 Rh7BG134200 Rh7CG137000 Rh7DG135000
rosa_wichuraiana	Rw7G011380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	291, 664
AccB1I	GGYRCC	1 cut(s)	540
AclWI	GGATC	2 cut(s)	55, 1258
AcsI	RAATTY	4 cut(s)	248, 346, 637, 666
AcuI	CTGAAG	2 cut(s)	1023, 1050
AcyI	GRCGYC	3 cut(s)	288, 661, 741
AfaI	GTAC	3 cut(s)	83, 1100, 1205
AfiI	CCNNNNNNNGG	4 cut(s)	75, 334, 649, 1113
AflIII	ACRYGT	2 cut(s)	571, 1216
AgsI	TTSAA	6 cut(s)	280, 374, 497, 590, 671, 886
AhlI	ACTAGT	1 cut(s)	1256
AjnI	CCWGG	1 cut(s)	1148
AjuI	GAANNNNNNNTTGG	2 cut(s)	1163, 1195
AluBI	AGCT	5 cut(s)	191, 733, 852, 1028, 1130
AluI	AGCT	5 cut(s)	191, 733, 852, 1028, 1130
Alw21I	GWGCWC	1 cut(s)	808
Alw26I	GTCTC	4 cut(s)	513, 774, 979, 1147
AlwI	GGATC	2 cut(s)	55, 1258
Ama87I	CYCGRG	1 cut(s)	1352
AoxI	GGCC	3 cut(s)	427, 939, 1355
ApeKI	GCWGC	3 cut(s)	1084, 1318, 1382
ApoI	RAATTY	4 cut(s)	248, 346, 637, 666
ArsI	GACNNNNNNTTYG	2 cut(s)	273, 305
AspS9I	GGNCC	4 cut(s)	939, 1225, 1298, 1355
AsuHPI	GGTGA	4 cut(s)	404, 823, 920, 932
AvaI	CYCGRG	1 cut(s)	1352
AvaII	GGWCC	2 cut(s)	1225, 1298
BanI	GGYRCC	1 cut(s)	540
BbsI	GAAGAC	1 cut(s)	1038
Bbv12I	GWGCWC	1 cut(s)	808
BbvI	GCAGC	3 cut(s)	1096, 1305, 1369
BccI	CCATC	4 cut(s)	142, 638, 857, 899
BceAI	ACGGC	3 cut(s)	92, 501, 1436
BcgI	CGANNNNNNTGC	2 cut(s)	998, 1032
BciT130I	CCWGG	1 cut(s)	1150
BclI	TGATCA	1 cut(s)	727
BcoDI	GTCTC	4 cut(s)	513, 774, 979, 1147
BcuI	ACTAGT	1 cut(s)	1256
BfaI	CTAG	3 cut(s)	489, 1257, 1437
BfmI	CTRYAG	1 cut(s)	1082
BisI	GCNGC	3 cut(s)	1085, 1319, 1383
BlsI	GCNGC	3 cut(s)	1086, 1320, 1384
BmcAI	AGTACT	1 cut(s)	1205
Bme1390I	CCNGG	1 cut(s)	1150
Bme18I	GGWCC	2 cut(s)	1225, 1298
BmeT110I	CYCGRG	1 cut(s)	1352
BmgT120I	GGNCC	4 cut(s)	939, 1225, 1298, 1355
BmiI	GGNNCC	1 cut(s)	542
BmrFI	CCNGG	1 cut(s)	1150
BmsI	GCATC	3 cut(s)	217, 685, 810
BpiI	GAAGAC	1 cut(s)	1038
BplI	GAGNNNNNCTC	2 cut(s)	828, 860
BpmI	CTGGAG	2 cut(s)	540, 1171
BpuEI	CTTGAG	3 cut(s)	167, 743, 1022
BsaHI	GRCGYC	3 cut(s)	288, 661, 741
BsaI	GGTCTC	1 cut(s)	979
BsaWI	WCCGGW	2 cut(s)	808, 970
BsaXI	ACNNNNNCTCC	4 cut(s)	115, 145, 1187, 1217
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 334, 649, 1113
Bse118I	RCCGGY	1 cut(s)	905
Bse1I	ACTGG	3 cut(s)	436, 957, 1111
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	1 cut(s)	1150
BseGI	GGATG	5 cut(s)	134, 540, 730, 764, 953
BseLI	CCNNNNNNNGG	4 cut(s)	75, 334, 649, 1113
BseMI	GCAATG	1 cut(s)	414
BseNI	ACTGG	3 cut(s)	436, 957, 1111
BseRI	GAGGAG	3 cut(s)	542, 1211, 1214
BseXI	GCAGC	3 cut(s)	1096, 1305, 1369
BsgI	GTGCAG	3 cut(s)	56, 282, 1284
BshFI	GGCC	3 cut(s)	429, 941, 1357
BshNI	GGYRCC	1 cut(s)	540
BsiHKAI	GWGCWC	1 cut(s)	808
BsiHKCI	CYCGRG	1 cut(s)	1352
BsiSI	CCGG	3 cut(s)	809, 906, 971
BslFI	GGGAC	2 cut(s)	136, 979
BslI	CCNNNNNNNGG	4 cut(s)	75, 334, 649, 1113
BsmAI	GTCTC	4 cut(s)	513, 774, 979, 1147
BsmBI	CGTCTC	1 cut(s)	1147
BsmFI	GGGAC	2 cut(s)	136, 979
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	3 cut(s)	429, 941, 1357
Bso31I	GGTCTC	1 cut(s)	979
BsoBI	CYCGRG	1 cut(s)	1352
Bsp1286I	GDGCHC	1 cut(s)	808
Bsp143I	GATC	3 cut(s)	47, 727, 1250
BspANI	GGCC	3 cut(s)	429, 941, 1357
BspHI	TCATGA	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	542
BspMAI	CTGCAG	1 cut(s)	1086
BspPI	GGATC	2 cut(s)	55, 1258
BspT107I	GGYRCC	1 cut(s)	540
BspTNI	GGTCTC	1 cut(s)	979
BsrDI	GCAATG	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	905
BsrI	ACTGG	3 cut(s)	436, 957, 1111
BssAI	RCCGGY	1 cut(s)	905
BssMI	GATC	3 cut(s)	47, 727, 1250
BssNI	GRCGYC	3 cut(s)	288, 661, 741
Bst2UI	CCWGG	1 cut(s)	1150
Bst4CI	ACNGT	4 cut(s)	14, 545, 988, 1430
Bst6I	CTCTTC	3 cut(s)	492, 511, 918
BstACI	GRCGYC	3 cut(s)	288, 661, 741
BstC8I	GCNNGC	2 cut(s)	1089, 1359
BstDEI	CTNAG	1 cut(s)	899
BstF5I	GGATG	5 cut(s)	134, 540, 730, 764, 953
BstKTI	GATC	3 cut(s)	50, 730, 1253
BstMAI	GTCTC	4 cut(s)	513, 774, 979, 1147
BstMBI	GATC	3 cut(s)	47, 727, 1250
BstMWI	GCNNNNNNNGC	3 cut(s)	1025, 1367, 1477
BstNI	CCWGG	1 cut(s)	1150
BstNSI	RCATGY	1 cut(s)	1220
BstSCI	CCNGG	1 cut(s)	1148
BstSFI	CTRYAG	1 cut(s)	1082
BstV1I	GCAGC	3 cut(s)	1096, 1305, 1369
BstV2I	GAAGAC	1 cut(s)	1038
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	3 cut(s)	429, 941, 1357
BtgZI	GCGATG	2 cut(s)	240, 1299
BtsCI	GGATG	5 cut(s)	134, 540, 730, 764, 953
BtsI	GCAGTG	1 cut(s)	1447
BtsIMutI	CAGTG	5 cut(s)	39, 602, 999, 1118, 1447
Cac8I	GCNNGC	2 cut(s)	1089, 1359
CciI	TCATGA	1 cut(s)	450
Cfr10I	RCCGGY	1 cut(s)	905
Cfr13I	GGNCC	4 cut(s)	939, 1225, 1298, 1355
CseI	GACGC	4 cut(s)	408, 566, 749, 1310
Csp6I	GTAC	3 cut(s)	82, 1099, 1204
CspCI	CAANNNNNGTGG	2 cut(s)	578, 613
CviAII	CATG	4 cut(s)	451, 692, 936, 1217
CviQI	GTAC	3 cut(s)	82, 1099, 1204
DdeI	CTNAG	1 cut(s)	899
DpnI	GATC	3 cut(s)	49, 729, 1252
DpnII	GATC	3 cut(s)	47, 727, 1250
DraI	TTTAAA	1 cut(s)	268
Eam1104I	CTCTTC	3 cut(s)	492, 511, 918
EarI	CTCTTC	3 cut(s)	492, 511, 918
Eco31I	GGTCTC	1 cut(s)	979
Eco47I	GGWCC	2 cut(s)	1225, 1298
Eco57I	CTGAAG	2 cut(s)	1023, 1050
Eco88I	CYCGRG	1 cut(s)	1352
EcoRII	CCWGG	1 cut(s)	1148
Esp3I	CGTCTC	1 cut(s)	1147
FaeI	CATG	4 cut(s)	454, 695, 939, 1220
FalI	AAGNNNNNCTT	2 cut(s)	752, 784
FaqI	GGGAC	2 cut(s)	136, 979
FatI	CATG	4 cut(s)	450, 691, 935, 1216
FauNDI	CATATG	2 cut(s)	358, 746
FbaI	TGATCA	1 cut(s)	727
Fnu4HI	GCNGC	3 cut(s)	1085, 1319, 1383
FokI	GGATG	5 cut(s)	121, 547, 737, 751, 940
Fsp4HI	GCNGC	3 cut(s)	1085, 1319, 1383
FspBI	CTAG	3 cut(s)	489, 1257, 1437
GluI	GCNGC	3 cut(s)	1085, 1319, 1383
GsuI	CTGGAG	2 cut(s)	540, 1171
HaeIII	GGCC	3 cut(s)	429, 941, 1357
HapII	CCGG	3 cut(s)	809, 906, 971
HgaI	GACGC	4 cut(s)	408, 566, 749, 1310
Hin1I	GRCGYC	3 cut(s)	288, 661, 741
Hin1II	CATG	4 cut(s)	454, 695, 939, 1220
HincII	GTYRAC	2 cut(s)	10, 548
HindII	GTYRAC	2 cut(s)	10, 548
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	3 cut(s)	454, 879, 1051
HpaI	GTTAAC	1 cut(s)	10
HpaII	CCGG	3 cut(s)	809, 906, 971
HphI	GGTGA	4 cut(s)	404, 823, 920, 932
Hpy166II	GTNNAC	3 cut(s)	10, 182, 548
Hpy188I	TCNGA	4 cut(s)	459, 836, 1025, 1407
Hpy188III	TCNNGA	6 cut(s)	146, 155, 179, 451, 557, 797
Hpy8I	GTNNAC	3 cut(s)	10, 182, 548
Hpy99I	CGWCG	7 cut(s)	293, 487, 582, 663, 1274, 1283, 1326
HpyAV	CCTTC	8 cut(s)	313, 718, 864, 960, 977, 1076, 1289, 1402
HpyCH4III	ACNGT	4 cut(s)	14, 545, 988, 1430
HpyCH4IV	ACGT	4 cut(s)	210, 288, 571, 661
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1025, 1367, 1477
HpyF3I	CTNAG	1 cut(s)	899
HpySE526I	ACGT	4 cut(s)	210, 288, 571, 661
Hsp92I	GRCGYC	3 cut(s)	288, 661, 741
Hsp92II	CATG	4 cut(s)	454, 695, 939, 1220
Ksp22I	TGATCA	1 cut(s)	727
KspAI	GTTAAC	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	47, 727, 1250
LmnI	GCTCC	3 cut(s)	811, 857, 1127
Lsp1109I	GCAGC	3 cut(s)	1096, 1305, 1369
LweI	GCATC	3 cut(s)	217, 685, 810
MaeI	CTAG	3 cut(s)	489, 1257, 1437
MaeII	ACGT	4 cut(s)	210, 288, 571, 661
MaeIII	GTNAC	1 cut(s)	908
MalI	GATC	3 cut(s)	49, 729, 1252
MboI	GATC	3 cut(s)	47, 727, 1250
MboII	GAAGA	7 cut(s)	42, 509, 528, 703, 874, 935, 1043
MfeI	CAATTG	2 cut(s)	423, 1337
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	808
MlyI	GAGTC	2 cut(s)	463, 1060
MmeI	TCCRAC	4 cut(s)	25, 71, 177, 1161
MseI	TTAA	9 cut(s)	9, 72, 267, 635, 770, 944, 1059, 1190, 1467
MspI	CCGG	3 cut(s)	809, 906, 971
MspR9I	CCNGG	1 cut(s)	1150
MunI	CAATTG	2 cut(s)	423, 1337
Mva1269I	GAATGC	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	1150
MwoI	GCNNNNNNNGC	3 cut(s)	1025, 1367, 1477
NdeI	CATATG	2 cut(s)	358, 746
NdeII	GATC	3 cut(s)	47, 727, 1250
NlaIII	CATG	4 cut(s)	454, 695, 939, 1220
NlaIV	GGNNCC	1 cut(s)	542
NmeAIII	GCCGAG	1 cut(s)	725
NmuCI	GTSAC	1 cut(s)	908
NspI	RCATGY	1 cut(s)	1220
PagI	TCATGA	1 cut(s)	450
PciI	ACATGT	1 cut(s)	1216
PcsI	WCGNNNNNNNCGW	5 cut(s)	747, 1275, 1278, 1284, 1426
PctI	GAATGC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	879
PkrI	GCNGC	3 cut(s)	1086, 1320, 1384
PleI	GAGTC	2 cut(s)	462, 1059
PpsI	GAGTC	2 cut(s)	462, 1059
PscI	ACATGT	1 cut(s)	1216
Psp6I	CCWGG	1 cut(s)	1148
PspGI	CCWGG	1 cut(s)	1148
PspN4I	GGNNCC	1 cut(s)	542
PspPI	GGNCC	4 cut(s)	939, 1225, 1298, 1355
PstI	CTGCAG	1 cut(s)	1086
PsuI	RGATCY	1 cut(s)	47
RsaI	GTAC	3 cut(s)	83, 1100, 1205
RsaNI	GTAC	3 cut(s)	82, 1099, 1204
SaqAI	TTAA	9 cut(s)	9, 72, 267, 635, 770, 944, 1059, 1190, 1467
SatI	GCNGC	3 cut(s)	1085, 1319, 1383
Sau3AI	GATC	3 cut(s)	47, 727, 1250
Sau96I	GGNCC	4 cut(s)	939, 1225, 1298, 1355
ScaI	AGTACT	1 cut(s)	1205
SchI	GAGTC	2 cut(s)	463, 1060
ScrFI	CCNGG	1 cut(s)	1150
SduI	GDGCHC	1 cut(s)	808
SfaNI	GCATC	3 cut(s)	217, 685, 810
SfcI	CTRYAG	1 cut(s)	1082
SinI	GGWCC	2 cut(s)	1225, 1298
SmlI	CTYRAG	3 cut(s)	146, 758, 1037
SmoI	CTYRAG	3 cut(s)	146, 758, 1037
SpeI	ACTAGT	1 cut(s)	1256
SspI	AATATT	1 cut(s)	317
SspMI	CTAG	3 cut(s)	489, 1257, 1437
StyD4I	CCNGG	1 cut(s)	1148
TaaI	ACNGT	4 cut(s)	14, 545, 988, 1430
TaiI	ACGT	4 cut(s)	213, 291, 574, 664
TaqI	TCGA	3 cut(s)	846, 982, 1008
TatI	WGTACW	1 cut(s)	1203
TfiI	GAWTC	1 cut(s)	879
Tru1I	TTAA	9 cut(s)	9, 72, 267, 635, 770, 944, 1059, 1190, 1467
Tru9I	TTAA	9 cut(s)	9, 72, 267, 635, 770, 944, 1059, 1190, 1467
TscAI	CASTG	5 cut(s)	39, 602, 1006, 1118, 1447
TseFI	GTSAC	1 cut(s)	908
TseI	GCWGC	3 cut(s)	1084, 1318, 1382
Tsp45I	GTSAC	1 cut(s)	908
TspDTI	ATGAA	5 cut(s)	295, 636, 817, 942, 1308
TspRI	CASTG	5 cut(s)	39, 602, 1006, 1118, 1447
VpaK11BI	GGWCC	2 cut(s)	1225, 1298
XapI	RAATTY	4 cut(s)	248, 346, 637, 666
XceI	RCATGY	1 cut(s)	1220
XspI	CTAG	3 cut(s)	489, 1257, 1437
ZraI	GACGTC	2 cut(s)	289, 662
ZrmI	AGTACT	1 cut(s)	1205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.