Rorug07G0008000

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000101
Physical Location & Seq
Reverse (-)
670520 .. 676695
6176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0008000.1

Sequence Viewer

Length: 1218 bp
ATGCCTCATAAAGGGATTTTGGAGTCTTTGAATCCGATTCCTGATCTTTCACTTCATATAAGCCCTCCAAACAGTGCTCCAAACGAACCTGCAGACTCTGCGGCCTTCAACATATGGCGGTGCAGAGACAACACCGACGTGCACGACGGCGGTCTAGTCAAATCTCACAGTGACGATGCTGCTACTACTCCACACGCCGCAGACACTGAGCTTTCCCTTGCAAATCCCACAAGTGCTTCGGAGGCCGAGAGTGACAGCAACTCATGGAAGATGATGAAATCGAGCTATTTCGCAAGAGATCAGCAGCAAGCAGCGGCCGAAAAGCACAACAACATAAGTCACGGCCTTTCCATGCTTGATGTGGCCGAGCTAGGAATCAAACCCATCAAAGGAATTCCAGTTTATAACAGCACTCCCGCAGCAGCTAATTGCTCCTTTCCGTTTTCTCCACCTAATTTGGACCCGTCTAGGGATATTTCAGCAGCTGCTAATTCCAAGCTTTGCTTCTACCAAACGCCGCCGCCGTATCTATCTCCTGCTGCACCCTTCAGACCCGGTGGTGCTGCTGCTATGGGAGCAGGAGTAGGAGGAGGGTTTGAGTCCAGGTATAACGGGATAACTATGGACAGTCTAAGAGTGCCTCAACAACACTTACAGTATCTGAATCATCATCACCATCAACAACAGCAGCTGCTGCAGCATCAACACCAATGTGGAGTTGGGGTTGGGATTGGGATTGGAGCTCATCATCATCATCATGGTGATTTCTCTAATACTAACGGGTTCATCATGAGATCTAGATTTACGCCCAAGTCGTATCAGAGTAAGAGGAGCATGAGGGCACCCAGAATGCGATGGACCAGCTCCCTCCACGCTCGTTTTGTTCACGCCGTCGAGCTCCTTGGCGGCCATGAAAGGGCGACTCCAAAGTCAGTGTTGGAGCTCATGGATGTCAAAGATCTCACACTTGCTCATGTTAAGAGCCATTTGCAGATGTATAGAACTGTGAAGAACACTGACAAACCTGTAGCTTCCTCAGATGGGTCTGGTGATGAAGATCTTATGTCCACAACAACGACAACGCATCATCAGAATTCAGCAAATGGTTTACTAAACCAAAGAGGAGGCTCAAATGCAAGTTTAAATTTAGAGCAAGATACGGAACACCCTTCTAGCAATCTGTGGGGTAACTCTTCCAGGTATGATCTTCATTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

405

Amino Acids

44.09

Weight (kDa)

6.73

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 283 - 334 2.9e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 405
AasI GACNNNNNNGTC 1 cut(s) 928
Acc36I ACCTGC 1 cut(s) 97
AccB1I GGYRCC 1 cut(s) 841
AciI CCGC 9 cut(s) 101, 118, 150, 198, 314, 417, 518, 521, 906
AcoI YGGCCR 3 cut(s) 315, 363, 907
AcsI RAATTY 3 cut(s) 393, 1093, 1144
AcuI CTGAAG 1 cut(s) 532
AfiI CCNNNNNNNGG 5 cut(s) 11, 389, 469, 916, 1041
AgsI TTSAA 2 cut(s) 31, 109
AjiI CACGTC 1 cut(s) 139
AjnI CCWGG 2 cut(s) 602, 1196
AjuI GAANNNNNNNTTGG 2 cut(s) 488, 520
AleI CACNNNNGTG 2 cut(s) 137, 711
Alw21I GWGCWC 5 cut(s) 79, 144, 745, 900, 945
Alw26I GTCTC 1 cut(s) 120
Alw44I GTGCAC 1 cut(s) 140
AlwNI CAGNNNCTG 6 cut(s) 98, 206, 485, 661, 691, 694
AoxI GGCC 6 cut(s) 102, 243, 315, 343, 363, 907
ApaLI GTGCAC 1 cut(s) 140
ApoI RAATTY 3 cut(s) 393, 1093, 1144
AspS9I GGNCC 2 cut(s) 460, 858
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 3 cut(s) 665, 773, 1061
AvaII GGWCC 2 cut(s) 460, 858
BaeGI GKGCMC 2 cut(s) 144, 844
BanI GGYRCC 1 cut(s) 841
BanII GRGCYC 3 cut(s) 745, 900, 945
Bbv12I GWGCWC 5 cut(s) 79, 144, 745, 900, 945
BccI CCATC 4 cut(s) 392, 684, 849, 1034
BceAI ACGGC 4 cut(s) 163, 358, 508, 875
BciT130I CCWGG 2 cut(s) 604, 1198
BcnI CCSGG 1 cut(s) 555
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 5 cut(s) 155, 371, 468, 798, 1173
BfmI CTRYAG 3 cut(s) 90, 695, 1026
BfuAI ACCTGC 1 cut(s) 97
BglII AGATCT 3 cut(s) 794, 958, 1057
Bme1390I CCNGG 3 cut(s) 555, 604, 1198
Bme18I GGWCC 2 cut(s) 460, 858
BmgBI CACGTC 1 cut(s) 139
BmgT120I GGNCC 2 cut(s) 460, 858
BmiI GGNNCC 2 cut(s) 462, 843
BmrFI CCNGG 3 cut(s) 555, 604, 1198
BmsI GCATC 3 cut(s) 166, 709, 1093
BoxI GACNNNNGTC 1 cut(s) 150
BpuMI CCSGG 1 cut(s) 555
BsaBI GATNNNNATC 1 cut(s) 1056
BsaJI CCNNGG 1 cut(s) 901
BsaXI ACNNNNNCTCC 4 cut(s) 567, 597, 708, 738
Bsc4I CCNNNNNNNGG 5 cut(s) 11, 389, 469, 916, 1041
Bse1I ACTGG 1 cut(s) 398
Bse8I GATNNNNATC 1 cut(s) 1056
BseBI CCWGG 2 cut(s) 604, 1198
BseDI CCNNGG 1 cut(s) 901
BseGI GGATG 1 cut(s) 955
BseJI GATNNNNATC 1 cut(s) 1056
BseLI CCNNNNNNNGG 5 cut(s) 11, 389, 469, 916, 1041
BseMII CTCAG 2 cut(s) 198, 1050
BseNI ACTGG 1 cut(s) 398
BseRI GAGGAG 3 cut(s) 603, 844, 1137
BseSI GKGCMC 2 cut(s) 144, 844
BseX3I CGGCCG 1 cut(s) 315
BsgI GTGCAG 2 cut(s) 142, 525
Bsh1285I CGRYCG 1 cut(s) 318
BshFI GGCC 6 cut(s) 104, 245, 317, 345, 365, 909
BshNI GGYRCC 1 cut(s) 841
BsiEI CGRYCG 1 cut(s) 318
BsiHKAI GWGCWC 5 cut(s) 79, 144, 745, 900, 945
BsiSI CCGG 1 cut(s) 555
BslI CCNNNNNNNGG 5 cut(s) 11, 389, 469, 916, 1041
BsmAI GTCTC 1 cut(s) 120
BsmI GAATGC 1 cut(s) 855
BsnI GGCC 6 cut(s) 104, 245, 317, 345, 365, 909
Bsp1286I GDGCHC 6 cut(s) 79, 144, 745, 844, 900, 945
Bsp143I GATC 6 cut(s) 43, 298, 794, 958, 1057, 1204
BspACI CCGC 9 cut(s) 101, 118, 150, 198, 314, 417, 518, 521, 906
BspANI GGCC 6 cut(s) 104, 245, 317, 345, 365, 909
BspCNI CTCAG 2 cut(s) 199, 1049
BspHI TCATGA 1 cut(s) 789
BspLI GGNNCC 2 cut(s) 462, 843
BspMAI CTGCAG 2 cut(s) 94, 699
BspMI ACCTGC 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 841
BsrI ACTGG 1 cut(s) 398
BssECI CCNNGG 1 cut(s) 901
BssMI GATC 6 cut(s) 43, 298, 794, 958, 1057, 1204
BssT1I CCWWGG 1 cut(s) 901
Bst2UI CCWGG 2 cut(s) 604, 1198
Bst4CI ACNGT 5 cut(s) 74, 170, 629, 657, 1006
Bst6I CTCTTC 1 cut(s) 1198
BstAPI GCANNNNNTGC 2 cut(s) 98, 694
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 3 cut(s) 207, 632, 1036
BstENI CCTNNNNNAGG 1 cut(s) 9
BstF5I GGATG 1 cut(s) 955
BstKTI GATC 6 cut(s) 46, 301, 797, 961, 1060, 1207
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 6 cut(s) 43, 298, 794, 958, 1057, 1204
BstMCI CGRYCG 1 cut(s) 318
BstMWI GCNNNNNNNGC 5 cut(s) 98, 242, 575, 694, 697
BstNI CCWGG 2 cut(s) 604, 1198
BstPAI GACNNNNGTC 1 cut(s) 150
BstSCI CCNGG 3 cut(s) 553, 602, 1196
BstSFI CTRYAG 3 cut(s) 90, 695, 1026
BstSLI GKGCMC 2 cut(s) 144, 844
BstX2I RGATCY 3 cut(s) 794, 958, 1057
BstYI RGATCY 3 cut(s) 794, 958, 1057
BstZI CGGCCG 1 cut(s) 315
BsuRI GGCC 6 cut(s) 104, 245, 317, 345, 365, 909
BtgZI GCGATG 1 cut(s) 868
BtrI CACGTC 1 cut(s) 139
BtsCI GGATG 1 cut(s) 955
BtsIMutI CAGTG 5 cut(s) 79, 175, 204, 939, 1014
BveI ACCTGC 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 309
CaiI CAGNNNCTG 6 cut(s) 98, 206, 485, 661, 691, 694
CciI TCATGA 1 cut(s) 789
Cfr13I GGNCC 2 cut(s) 460, 858
CspCI CAANNNNNGTGG 2 cut(s) 438, 473
CviAII CATG 8 cut(s) 264, 352, 758, 790, 835, 911, 946, 974
DdeI CTNAG 3 cut(s) 207, 632, 1036
DpnI GATC 6 cut(s) 45, 300, 796, 960, 1059, 1206
DpnII GATC 6 cut(s) 43, 298, 794, 958, 1057, 1204
DraI TTTAAA 1 cut(s) 1143
DrdI GACNNNNNNGTC 1 cut(s) 928
DseDI GACNNNNNNGTC 1 cut(s) 928
EaeI YGGCCR 3 cut(s) 315, 363, 907
EagI CGGCCG 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 1198
EarI CTCTTC 1 cut(s) 1198
Ecl136II GAGCTC 3 cut(s) 743, 898, 943
EclXI CGGCCG 1 cut(s) 315
Eco130I CCWWGG 1 cut(s) 901
Eco24I GRGCYC 3 cut(s) 745, 900, 945
Eco47I GGWCC 2 cut(s) 460, 858
Eco52I CGGCCG 1 cut(s) 315
Eco53kI GAGCTC 3 cut(s) 743, 898, 943
Eco57I CTGAAG 1 cut(s) 532
EcoICRI GAGCTC 3 cut(s) 743, 898, 943
EcoNI CCTNNNNNAGG 1 cut(s) 9
EcoRI GAATTC 2 cut(s) 393, 1093
EcoRII CCWGG 2 cut(s) 602, 1196
EcoT14I CCWWGG 1 cut(s) 901
EcoT38I GRGCYC 3 cut(s) 745, 900, 945
ErhI CCWWGG 1 cut(s) 901
FaeI CATG 8 cut(s) 267, 355, 761, 793, 838, 914, 949, 977
FalI AAGNNNNNCTT 2 cut(s) 488, 520
FatI CATG 8 cut(s) 263, 351, 757, 789, 834, 910, 945, 973
FauI CCCGC 1 cut(s) 424
FauNDI CATATG 1 cut(s) 113
FokI GGATG 1 cut(s) 962
FriOI GRGCYC 3 cut(s) 745, 900, 945
FspBI CTAG 5 cut(s) 155, 371, 468, 798, 1173
HaeIII GGCC 6 cut(s) 104, 245, 317, 345, 365, 909
HapII CCGG 1 cut(s) 555
Hin1II CATG 8 cut(s) 267, 355, 761, 793, 838, 914, 949, 977
HindIII AAGCTT 1 cut(s) 497
HinfI GANTC 8 cut(s) 23, 31, 37, 95, 375, 599, 664, 922
HpaII CCGG 1 cut(s) 555
HphI GGTGA 3 cut(s) 665, 773, 1061
Hpy166II GTNNAC 4 cut(s) 142, 886, 1068, 1109
Hpy188I TCNGA 7 cut(s) 36, 241, 551, 663, 822, 1039, 1092
Hpy188III TCNNGA 3 cut(s) 41, 790, 798
Hpy8I GTNNAC 4 cut(s) 142, 886, 1068, 1109
Hpy99I CGWCG 3 cut(s) 140, 149, 896
HpyAV CCTTC 3 cut(s) 115, 556, 1179
HpyCH4III ACNGT 5 cut(s) 74, 170, 629, 657, 1006
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 8 cut(s) 92, 123, 142, 221, 542, 697, 991, 1136
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 242, 575, 694, 697
HpyF3I CTNAG 3 cut(s) 207, 632, 1036
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 8 cut(s) 267, 355, 761, 793, 838, 914, 949, 977
Kzo9I GATC 6 cut(s) 43, 298, 794, 958, 1057, 1204
LmnI GCTCC 8 cut(s) 82, 437, 575, 740, 831, 869, 903, 940
LweI GCATC 3 cut(s) 166, 709, 1093
MaeI CTAG 5 cut(s) 155, 371, 468, 798, 1173
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 4 cut(s) 170, 251, 338, 1187
MalI GATC 6 cut(s) 45, 300, 796, 960, 1059, 1206
MboI GATC 6 cut(s) 43, 298, 794, 958, 1057, 1204
MboII GAAGA 5 cut(s) 280, 1021, 1067, 1185, 1199
MflI RGATCY 3 cut(s) 794, 958, 1057
MhlI GDGCHC 6 cut(s) 79, 144, 745, 844, 900, 945
MluCI AATT 6 cut(s) 393, 427, 454, 490, 1093, 1144
MlyI GAGTC 4 cut(s) 32, 89, 608, 916
MmeI TCCRAC 1 cut(s) 918
MseI TTAA 2 cut(s) 978, 1142
MslI CAYNNNNRTG 4 cut(s) 137, 711, 756, 759
MspA1I CMGCKG 3 cut(s) 314, 485, 691
MspI CCGG 1 cut(s) 555
MspR9I CCNGG 3 cut(s) 555, 604, 1198
Mva1269I GAATGC 1 cut(s) 855
MvaI CCWGG 2 cut(s) 604, 1198
MwoI GCNNNNNNNGC 5 cut(s) 98, 242, 575, 694, 697
NciI CCSGG 1 cut(s) 555
NdeI CATATG 1 cut(s) 113
NdeII GATC 6 cut(s) 43, 298, 794, 958, 1057, 1204
NlaIII CATG 8 cut(s) 267, 355, 761, 793, 838, 914, 949, 977
NlaIV GGNNCC 2 cut(s) 462, 843
NmeAIII GCCGAG 2 cut(s) 271, 391
NmuCI GTSAC 3 cut(s) 170, 251, 338
OliI CACNNNNGTG 2 cut(s) 137, 711
PagI TCATGA 1 cut(s) 789
PcsI WCGNNNNNNNCGW 2 cut(s) 521, 812
PctI GAATGC 1 cut(s) 855
PfeI GAWTC 4 cut(s) 31, 37, 375, 664
PleI GAGTC 4 cut(s) 31, 89, 607, 916
PpsI GAGTC 4 cut(s) 31, 89, 607, 916
PshAI GACNNNNGTC 1 cut(s) 150
PsiI TTATAA 1 cut(s) 405
Psp124BI GAGCTC 3 cut(s) 745, 900, 945
Psp6I CCWGG 2 cut(s) 602, 1196
PspGI CCWGG 2 cut(s) 602, 1196
PspN4I GGNNCC 2 cut(s) 462, 843
PspPI GGNCC 2 cut(s) 460, 858
PstI CTGCAG 2 cut(s) 94, 699
PstNI CAGNNNCTG 6 cut(s) 98, 206, 485, 661, 691, 694
PsuI RGATCY 3 cut(s) 794, 958, 1057
PvuII CAGCTG 2 cut(s) 485, 691
RseI CAYNNNNRTG 4 cut(s) 137, 711, 756, 759
SacI GAGCTC 3 cut(s) 745, 900, 945
SaqAI TTAA 2 cut(s) 978, 1142
Sau3AI GATC 6 cut(s) 43, 298, 794, 958, 1057, 1204
Sau96I GGNCC 2 cut(s) 460, 858
SchI GAGTC 4 cut(s) 32, 89, 608, 916
ScrFI CCNGG 3 cut(s) 555, 604, 1198
SduI GDGCHC 6 cut(s) 79, 144, 745, 844, 900, 945
SfaNI GCATC 3 cut(s) 166, 709, 1093
SfcI CTRYAG 3 cut(s) 90, 695, 1026
SinI GGWCC 2 cut(s) 460, 858
SmiMI CAYNNNNRTG 4 cut(s) 137, 711, 756, 759
Sse9I AATT 6 cut(s) 393, 427, 454, 490, 1093, 1144
SsiI CCGC 9 cut(s) 101, 118, 150, 198, 314, 417, 518, 521, 906
SspMI CTAG 5 cut(s) 155, 371, 468, 798, 1173
SstI GAGCTC 3 cut(s) 745, 900, 945
StyD4I CCNGG 3 cut(s) 553, 602, 1196
StyI CCWWGG 1 cut(s) 901
TaaI ACNGT 5 cut(s) 74, 170, 629, 657, 1006
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 281, 894
TasI AATT 6 cut(s) 393, 427, 454, 490, 1093, 1144
TauI GCSGC 6 cut(s) 104, 200, 317, 520, 523, 909
TfiI GAWTC 4 cut(s) 31, 37, 375, 664
Tru1I TTAA 2 cut(s) 978, 1142
Tru9I TTAA 2 cut(s) 978, 1142
TscAI CASTG 5 cut(s) 79, 175, 211, 939, 1021
TseFI GTSAC 3 cut(s) 170, 251, 338
Tsp45I GTSAC 3 cut(s) 170, 251, 338
TspDTI ATGAA 6 cut(s) 44, 290, 775, 927, 1068, 1199
TspGWI ACGGA 2 cut(s) 429, 1175
TspRI CASTG 5 cut(s) 79, 175, 211, 939, 1021
VneI GTGCAC 1 cut(s) 140
VpaK11BI GGWCC 2 cut(s) 460, 858
XagI CCTNNNNNAGG 1 cut(s) 9
XapI RAATTY 3 cut(s) 393, 1093, 1144
XbaI TCTAGA 1 cut(s) 797
XcmI CCANNNNNNNNNTGG 2 cut(s) 358, 716
XspI CTAG 5 cut(s) 155, 371, 468, 798, 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.