Rh1DG165700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000101
Physical Location & Seq
Reverse (-)
33928141 .. 33928884
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG165700.1

Sequence Viewer

Length: 744 bp
ATGGGGGACACCAAGGTGAAGTCCACTGCTTGCCCCAACTCTTGTGCTGATGACCTCCAGAAACATGTAATGGAGGTTTTTGAGGAGGCCACCAAAGACTCTGAGGACTTTGTGTTGCCACTAAAATTTTCCATGATTCGCAACTATGATAACCTTAACGAATATGATATTCAAATATTCGATTCTATGGCAAACGACGACCCCCTCGACGAAGCCAAAGAGCTCTTTAAGCCTCTCTCTGACCAGGGCATACTGCCAGACGTGGCTGTCCTCACCATTGTCATCGGGGAATATGCCTTTGCTGGCGAGATCAAGGCTGCTCTCAAGGTCTATCAGCGCATGTTAGCCACTGGTGTCTCCCCCACCTCCCACACTTACACTCTACTCATCATGGCCCTTATAGCAGACTCTTCTGATGTCAATTATGTTGGCCTTGCCAAGAAATATTTTATGGAAATGTTGGATAAGGGATTGAAGCCCCATGATGTGTCCTATATCTCTGTCTTTGATGCCATTGCCCACCAGGAGTCGGTGGAGAAGGCCAGGGAGTTCCTTGAGCAAATAAAAGCAAAGGGGTTCAGCCTTCAGTCCAATGTTTTCTACTTTGATGAAGCCCACCTCACAGAAGCGATGAAGATAACGAAGTTGCTCCATGATCTCACCAACAACACGACTGACAGGATATACAAAAGCTCTTCCGCAAGTGGTGCACTAGTGGACATGGCTTCCAGAAAGAGTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

247

Amino Acids

27.61

Weight (kDa)

4.86

Isoelectric Point (pI)

29.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 86 - 133 6.6e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AciI CCGC 1 cut(s) 699
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 1 cut(s) 569
AfiI CCNNNNNNNGG 1 cut(s) 529
AflIII ACRYGT 1 cut(s) 64
AgsI TTSAA 2 cut(s) 173, 475
AhlI ACTAGT 1 cut(s) 712
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 3 cut(s) 243, 522, 542
AleI CACNNNNGTG 1 cut(s) 14
AluBI AGCT 2 cut(s) 223, 693
AluI AGCT 2 cut(s) 223, 693
Alw21I GWGCWC 2 cut(s) 225, 712
Alw26I GTCTC 1 cut(s) 361
Alw44I GTGCAC 1 cut(s) 708
AoxI GGCC 4 cut(s) 87, 393, 430, 540
ApaLI GTGCAC 1 cut(s) 708
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 125
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 394
AsuHPI GGTGA 3 cut(s) 28, 265, 652
BaeGI GKGCMC 1 cut(s) 712
BanII GRGCYC 1 cut(s) 225
Bbv12I GWGCWC 2 cut(s) 225, 712
BbvI GCAGC 1 cut(s) 304
BciT130I CCWGG 3 cut(s) 245, 524, 544
BcoDI GTCTC 1 cut(s) 361
BcuI ACTAGT 1 cut(s) 712
BfaI CTAG 1 cut(s) 713
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
Bme1390I CCNGG 3 cut(s) 245, 524, 544
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 394
BmrFI CCNGG 3 cut(s) 245, 524, 544
BmsI GCATC 1 cut(s) 499
BpmI CTGGAG 1 cut(s) 41
BpuEI CTTGAG 2 cut(s) 308, 575
BsaJI CCNNGG 3 cut(s) 12, 244, 543
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse1I ACTGG 1 cut(s) 355
Bse3DI GCAATG 1 cut(s) 513
BseBI CCWGG 3 cut(s) 245, 524, 544
BseDI CCNNGG 3 cut(s) 12, 244, 543
BseLI CCNNNNNNNGG 1 cut(s) 529
BseMI GCAATG 1 cut(s) 513
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 355
BseRI GAGGAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 712
BseXI GCAGC 1 cut(s) 304
BshFI GGCC 4 cut(s) 89, 395, 432, 542
BsiHKAI GWGCWC 2 cut(s) 225, 712
BslFI GGGAC 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 529
BsmAI GTCTC 1 cut(s) 361
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 4 cut(s) 89, 395, 432, 542
Bsp1286I GDGCHC 2 cut(s) 225, 712
Bsp143I GATC 2 cut(s) 309, 655
BspACI CCGC 1 cut(s) 699
BspANI GGCC 4 cut(s) 89, 395, 432, 542
BspCNI CTCAG 1 cut(s) 94
BspQI GCTCTTC 1 cut(s) 700
BsrDI GCAATG 1 cut(s) 513
BsrI ACTGG 1 cut(s) 355
BssECI CCNNGG 3 cut(s) 12, 244, 543
BssMI GATC 2 cut(s) 309, 655
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 3 cut(s) 245, 524, 544
Bst6I CTCTTC 2 cut(s) 415, 700
BstAPI GCANNNNNTGC 1 cut(s) 707
BstC8I GCNNGC 2 cut(s) 31, 304
BstDEI CTNAG 1 cut(s) 102
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 2 cut(s) 312, 658
BstMAI GTCTC 1 cut(s) 361
BstMBI GATC 2 cut(s) 309, 655
BstMWI GCNNNNNNNGC 3 cut(s) 229, 401, 707
BstNI CCWGG 3 cut(s) 245, 524, 544
BstNSI RCATGY 2 cut(s) 68, 343
BstSCI CCNGG 3 cut(s) 243, 522, 542
BstSLI GKGCMC 1 cut(s) 712
BstV1I GCAGC 1 cut(s) 304
BsuRI GGCC 4 cut(s) 89, 395, 432, 542
BtgZI GCGATG 1 cut(s) 644
BtrI CACGTC 1 cut(s) 262
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 2 cut(s) 24, 348
Cac8I GCNNGC 2 cut(s) 31, 304
CfoI GCGC 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 394
CviAII CATG 7 cut(s) 65, 133, 340, 391, 482, 653, 721
DdeI CTNAG 1 cut(s) 102
DpnI GATC 2 cut(s) 311, 657
DpnII GATC 2 cut(s) 309, 655
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
Eam1104I CTCTTC 2 cut(s) 415, 700
EarI CTCTTC 2 cut(s) 415, 700
Ecl136II GAGCTC 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 225
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 569
EcoICRI GAGCTC 1 cut(s) 223
EcoRII CCWGG 3 cut(s) 243, 522, 542
EcoT14I CCWWGG 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 7 cut(s) 68, 136, 343, 394, 485, 656, 724
FaqI GGGAC 1 cut(s) 20
FatI CATG 7 cut(s) 64, 132, 339, 390, 481, 652, 720
Fnu4HI GCNGC 1 cut(s) 318
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 1 cut(s) 713
GlaI GCGC 1 cut(s) 338
GluI GCNGC 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 4 cut(s) 89, 395, 432, 542
HhaI GCGC 1 cut(s) 339
Hin1II CATG 7 cut(s) 68, 136, 343, 394, 485, 656, 724
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HinfI GANTC 6 cut(s) 98, 136, 182, 407, 527, 736
HphI GGTGA 3 cut(s) 28, 265, 652
Hpy166II GTNNAC 3 cut(s) 24, 710, 718
Hpy188I TCNGA 3 cut(s) 103, 241, 415
Hpy188III TCNNGA 2 cut(s) 58, 729
Hpy8I GTNNAC 3 cut(s) 24, 710, 718
Hpy99I CGWCG 2 cut(s) 200, 212
HpyAV CCTTC 2 cut(s) 532, 593
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 1 cut(s) 710
HpyF10VI GCNNNNNNNGC 3 cut(s) 229, 401, 707
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 7 cut(s) 68, 136, 343, 394, 485, 656, 724
HspAI GCGC 1 cut(s) 337
Kzo9I GATC 2 cut(s) 309, 655
LguI GCTCTTC 1 cut(s) 700
LmnI GCTCC 1 cut(s) 654
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 499
MaeI CTAG 1 cut(s) 713
MaeII ACGT 1 cut(s) 261
MalI GATC 2 cut(s) 311, 657
MboI GATC 2 cut(s) 309, 655
MboII GAAGA 3 cut(s) 402, 646, 687
MhlI GDGCHC 2 cut(s) 225, 712
MluCI AATT 2 cut(s) 125, 421
MlyI GAGTC 3 cut(s) 92, 401, 536
MmeI TCCRAC 1 cut(s) 441
MseI TTAA 2 cut(s) 156, 228
MslI CAYNNNNRTG 1 cut(s) 14
MspR9I CCNGG 3 cut(s) 245, 524, 544
MvaI CCWGG 3 cut(s) 245, 524, 544
MwoI GCNNNNNNNGC 3 cut(s) 229, 401, 707
NdeII GATC 2 cut(s) 309, 655
NlaIII CATG 7 cut(s) 68, 136, 343, 394, 485, 656, 724
NspI RCATGY 2 cut(s) 68, 343
OliI CACNNNNGTG 1 cut(s) 14
PciI ACATGT 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 700
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PfeI GAWTC 2 cut(s) 136, 182
PkrI GCNGC 1 cut(s) 319
PleI GAGTC 3 cut(s) 92, 401, 535
PpsI GAGTC 3 cut(s) 92, 401, 535
PscI ACATGT 1 cut(s) 64
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 3 cut(s) 243, 522, 542
PspGI CCWGG 3 cut(s) 243, 522, 542
PspPI GGNCC 1 cut(s) 394
RseI CAYNNNNRTG 1 cut(s) 14
SacI GAGCTC 1 cut(s) 225
SapI GCTCTTC 1 cut(s) 700
SaqAI TTAA 2 cut(s) 156, 228
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 2 cut(s) 309, 655
Sau96I GGNCC 1 cut(s) 394
SchI GAGTC 3 cut(s) 92, 401, 536
ScrFI CCNGG 3 cut(s) 245, 524, 544
SduI GDGCHC 2 cut(s) 225, 712
SfaNI GCATC 1 cut(s) 499
SmiMI CAYNNNNRTG 1 cut(s) 14
SmlI CTYRAG 2 cut(s) 323, 554
SmoI CTYRAG 2 cut(s) 323, 554
SpeI ACTAGT 1 cut(s) 712
Sse9I AATT 2 cut(s) 125, 421
SsiI CCGC 1 cut(s) 699
SspI AATATT 2 cut(s) 177, 446
SspMI CTAG 1 cut(s) 713
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 3 cut(s) 243, 522, 542
StyI CCWWGG 1 cut(s) 12
TaiI ACGT 1 cut(s) 264
TaqI TCGA 2 cut(s) 180, 207
TasI AATT 2 cut(s) 125, 421
TfiI GAWTC 2 cut(s) 136, 182
Tru1I TTAA 2 cut(s) 156, 228
Tru9I TTAA 2 cut(s) 156, 228
TscAI CASTG 2 cut(s) 31, 355
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 2 cut(s) 624, 647
TspRI CASTG 2 cut(s) 31, 355
VneI GTGCAC 1 cut(s) 708
XapI RAATTY 1 cut(s) 125
XceI RCATGY 2 cut(s) 68, 343
XspI CTAG 1 cut(s) 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.