RLG00000004294

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000101
Physical Location & Seq
Reverse (-)
58054011 .. 58058980
4970 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004294

Sequence Viewer

Length: 2064 bp
ATGGCTTCCGACGACCTCTCCACTGTGTCCGCCGCTGCTGATGACGAGAAGTACGGGTTCAAGAGGCCGGAGACCATGCGACACCATCACCGTCATCGTTCTCCTCCCATAGAAGCATCATCCTCATCCCAGAATTGTAGTGAATTCGAAGTGTCAAAACCCTTTGTCTTCTTCGGTCAAAACCCTTTCTCCTCTCCTAAACGGCTCAAACCAACCCAACAATTCCTCCTCAGAGCTACCGTCGCCGATCATCACATAAAGAGTGACAAATCAATGGCGGAAACCACCAAACTGAACTTGGCTGATTCTGCTGCCGCCGATGACCTGGAGAAGCCACCGGAGGACTTGCGAAAAGTCCTCGCGAAGATGCGTACCCAGGAAGCTCTGATCAGCAGCACAACCAAGATGGTGGAGGGTTTGTTAAGAGACGGCTTCATGAACGTGGCCTTGGAGATTGGAACCAAGATTCAGGACACCAATGAGGTGCCTCGGGTCGTCACCGACACTGCTGTCATCGAGTACTACGTCAATGCCGCAGGGGACAGGACCAAGGATGCTCTCAGAGTGTTCAAGCACATGTCGGCTTCAGGGGTTGAACCAAATGCCTACACATATGCCGTCATCATCAAGGCTCTTGCTGCTGCTGACCTTAAGAAGAACCCGAATTTCGTTGTTTATGCCAAGAATTACTTTGTGGAGATGCTGGACAGGGGAATGCAGCCAAATGAGGAGACTTATGATGCAGTGTTGGAAGGCATTGGCCGCTGTGAGAACAAGGCTGAGGCTGAGGAAGAGCGCAGGGAGTTTGTGGAGAATGTAAAAGAAAAGGGGTTTGTGCTGGTGCTCCAGAAGGAGGCAGAGGAGATGGCTAAACCTCCTCCATTGAAGTCCGAGATGGAAATGCTTAAGGAACATGTAATGATGGTGTTCGAGGATGCCACCAAAGATTGTGAAGACGAGAATGTGCAAGCAAGATTCAGACAGATTGGGCAGGACTATGAATCACTGAGCAAATGTGCATTCGACCTTTTTAATGCTTTGGTACGTAGAGGGCTCAACGAGGAAGCCAGAGAGCTATTTAAGCCCCTGTTGGAGACAGCCATACTGCCCGATGAGGCCATCTTCACCATTGTCATCCATATCTATGGCGCTGGCAAGATCATGGGTCATGCTCTGAAGGCGTACCGGCACATGTTATCTTACAGGATCACCCCCAGCTCTTGCACTTACAATTTACTCATTGCAACACTTTCTCTTGATCCCAATTTCCTTGGGCATGCCAAGGAGTTATTTCTCGAAATGTTGGATAAGGGTATCAAGCCCTTTTGCGGAACCTTTATGGCTGTGTTCAATGGTATTGCTCGCCTGGAGTCCTTGGAGAAGGGGAAGGAGTTGCTTGAGCAGATAAAGCCTAAGGGGGTCTTGCCTGTGCTGGACGAAGGCCGTTTCACTGAGGCAATGAAGGCTATGAAGTTGTATGATGATCTCGAGAAGAGGACCACTGACAAAGATGTTCAAGAAGTTATCCGCAATATCTACCTTAATGGCATGGAGGAAGAGTCAAGGGACATGTTCATTGCTATGGTAGAAGATGGCAATGTAGACGAGGCAATGAGGACCTTTCAGTCAACAGGTCAGCCGCGCATCAATCCCATGGTCATAGTCCACACTGCTGTTATTGAAGCTTACATCAATGGTGGCAAGACTGAGGGTGCTCTCCAGACCTTCATGGACATGCTAGCAGCTGGACTTGCCCCAATATCCTACACTTACTCTGTTTTGATCAAGGGACTCGCTACTGACCCCAACTTCTTTGGGGATGCCAAGAAGTATCTGATTGAGATGATGGACAAGGGTATGCATCCAAATGCTGCCACCTACACTGCAGTGTTTGAGGGCTTTGCAAGGGAGGATGACAAGGCAACTGAGGAGGAGGGTAAGAAATTTCTGGAGGTCATGATGGCCAAGGGTTTTGTACCTGACTCTGTGGCTGTGAGGAAGGTGTTAACAGGCAGACGAACATCTGTGATTAGCAGGGTCATGAACATCATCCTTTTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

688

Amino Acids

77.22

Weight (kDa)

5.39

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 163 - 213 1.7e-09 PPR repeat family
PPR_2 PF13041 553 - 599 1.7e-08 PPR repeat family
TPR_24 PF23276 554 - 639 6.2e-06 Fungal tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 509, 1624
AccB1I GGYRCC 1 cut(s) 484
AccI GTMKAC 1 cut(s) 1602
AccII CGCG 2 cut(s) 362, 1642
AciI CCGC 9 cut(s) 30, 33, 278, 315, 534, 763, 1329, 1528, 1640
AclWI GGATC 2 cut(s) 1214, 1253
AcoI YGGCCR 2 cut(s) 760, 1962
AcsI RAATTY 3 cut(s) 143, 664, 1943
AcuI CTGAAG 2 cut(s) 570, 1196
AfaI GTAC 6 cut(s) 53, 373, 521, 1044, 1184, 1977
AfiI CCNNNNNNNGG 2 cut(s) 853, 1328
AflII CTTAAG 2 cut(s) 650, 905
AflIII ACRYGT 4 cut(s) 576, 913, 1191, 1569
AgsI TTSAA 7 cut(s) 61, 571, 596, 886, 1351, 1517, 1682
AjnI CCWGG 3 cut(s) 324, 375, 1365
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AleI CACNNNNGTG 1 cut(s) 1886
AluBI AGCT 6 cut(s) 236, 383, 1075, 1218, 1685, 1745
AluI AGCT 6 cut(s) 236, 383, 1075, 1218, 1685, 1745
Alw21I GWGCWC 2 cut(s) 846, 1717
Alw26I GTCTC 4 cut(s) 65, 420, 725, 1088
AlwI GGATC 2 cut(s) 1214, 1253
Ama87I CYCGRG 2 cut(s) 489, 1487
AoxI GGCC 6 cut(s) 65, 444, 760, 1116, 1441, 1962
ApeKI GCWGC 8 cut(s) 35, 311, 393, 638, 641, 718, 1742, 1871
ApoI RAATTY 3 cut(s) 143, 664, 1943
AspLEI GCGC 3 cut(s) 798, 1151, 1644
AspS9I GGNCC 3 cut(s) 546, 1497, 1617
AsuHPI GGTGA 4 cut(s) 80, 490, 1117, 1201
AsuII TTCGAA 1 cut(s) 147
AsuNHI GCTAGC 1 cut(s) 1738
AvaI CYCGRG 2 cut(s) 489, 1487
AvaII GGWCC 3 cut(s) 546, 1497, 1617
AxyI CCTNAGG 1 cut(s) 1413
BalI TGGCCA 1 cut(s) 1964
BanI GGYRCC 1 cut(s) 484
BanII GRGCYC 1 cut(s) 1056
BbsI GAAGAC 2 cut(s) 160, 960
Bbv12I GWGCWC 2 cut(s) 846, 1717
BbvCI CCTCAGC 2 cut(s) 780, 786
BbvI GCAGC 8 cut(s) 22, 298, 405, 625, 628, 730, 1754, 1858
BccI CCATC 9 cut(s) 93, 400, 859, 889, 916, 1127, 1586, 1840, 1954
BceAI ACGGC 4 cut(s) 218, 445, 602, 1428
BciT130I CCWGG 3 cut(s) 326, 377, 1367
BclI TGATCA 2 cut(s) 387, 1782
BcoDI GTCTC 4 cut(s) 65, 420, 725, 1088
BfaI CTAG 1 cut(s) 1739
BfmI CTRYAG 1 cut(s) 1884
BfoI RGCGCY 1 cut(s) 1152
BfrI CTTAAG 2 cut(s) 650, 905
BmcAI AGTACT 1 cut(s) 521
Bme1390I CCNGG 3 cut(s) 326, 377, 1367
Bme18I GGWCC 3 cut(s) 546, 1497, 1617
BmeT110I CYCGRG 2 cut(s) 489, 1487
BmgT120I GGNCC 3 cut(s) 546, 1497, 1617
BmiI GGNNCC 3 cut(s) 460, 486, 1333
BmrFI CCNGG 3 cut(s) 326, 377, 1367
BmsI GCATC 9 cut(s) 125, 357, 544, 690, 730, 925, 1653, 1810, 1870
BmtI GCTAGC 1 cut(s) 1742
BpiI GAAGAC 2 cut(s) 160, 960
BpmI CTGGAG 5 cut(s) 347, 830, 1388, 1703, 1970
Bpu10I CCTNAGC 2 cut(s) 780, 786
Bpu14I TTCGAA 1 cut(s) 147
BpuEI CTTGAG 1 cut(s) 1418
BsaAI YACGTR 1 cut(s) 1046
BsaI GGTCTC 1 cut(s) 65
BsaJI CCNNGG 9 cut(s) 375, 447, 488, 549, 1270, 1281, 1374, 1653, 1965
BsaWI WCCGGW 1 cut(s) 337
BsaXI ACNNNNNCTCC 9 cut(s) 32, 173, 203, 210, 240, 404, 434, 1544, 1574
Bsc4I CCNNNNNNNGG 2 cut(s) 853, 1328
Bse118I RCCGGY 1 cut(s) 1185
Bse21I CCTNAGG 1 cut(s) 1413
Bse3DI GCAATG 5 cut(s) 1239, 1464, 1575, 1603, 1617
BseBI CCWGG 3 cut(s) 326, 377, 1367
BseDI CCNNGG 9 cut(s) 375, 447, 488, 549, 1270, 1281, 1374, 1653, 1965
BseGI GGATG 9 cut(s) 119, 125, 559, 940, 1134, 1825, 1861, 1918, 2049
BseLI CCNNNNNNNGG 2 cut(s) 853, 1328
BseMI GCAATG 5 cut(s) 1239, 1464, 1575, 1603, 1617
BseMII CTCAG 8 cut(s) 244, 574, 771, 777, 998, 1443, 1698, 1917
BseRI GAGGAG 8 cut(s) 93, 181, 218, 743, 867, 875, 1943, 1946
BseXI GCAGC 8 cut(s) 22, 298, 405, 625, 628, 730, 1754, 1858
BseYI CCCAGC 1 cut(s) 1214
Bsh1236I CGCG 2 cut(s) 362, 1642
BshFI GGCC 6 cut(s) 67, 446, 762, 1118, 1443, 1964
BshNI GGYRCC 1 cut(s) 484
BsiHKAI GWGCWC 2 cut(s) 846, 1717
BsiHKCI CYCGRG 2 cut(s) 489, 1487
BsiSI CCGG 3 cut(s) 68, 338, 1186
BslFI GGGAC 3 cut(s) 554, 1580, 1803
BslI CCNNNNNNNGG 2 cut(s) 853, 1328
BsmAI GTCTC 4 cut(s) 65, 420, 725, 1088
BsmBI CGTCTC 1 cut(s) 420
BsmFI GGGAC 3 cut(s) 554, 1580, 1803
BsmI GAATGC 2 cut(s) 720, 1019
BsnI GGCC 6 cut(s) 67, 446, 762, 1118, 1443, 1964
Bso31I GGTCTC 1 cut(s) 65
BsoBI CYCGRG 2 cut(s) 489, 1487
Bsp119I TTCGAA 1 cut(s) 147
Bsp1286I GDGCHC 3 cut(s) 846, 1056, 1717
Bsp143I GATC 7 cut(s) 247, 387, 1158, 1206, 1258, 1483, 1782
Bsp19I CCATGG 1 cut(s) 1653
Bsp68I TCGCGA 1 cut(s) 362
BspACI CCGC 9 cut(s) 30, 33, 278, 315, 534, 763, 1329, 1528, 1640
BspANI GGCC 6 cut(s) 67, 446, 762, 1118, 1443, 1964
BspCNI CTCAG 8 cut(s) 243, 573, 772, 778, 999, 1444, 1699, 1918
BspFNI CGCG 2 cut(s) 362, 1642
BspHI TCATGA 3 cut(s) 435, 1956, 2040
BspLI GGNNCC 3 cut(s) 460, 486, 1333
BspMAI CTGCAG 1 cut(s) 1888
BspOI GCTAGC 1 cut(s) 1742
BspPI GGATC 2 cut(s) 1214, 1253
BspQI GCTCTTC 1 cut(s) 786
BspT104I TTCGAA 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 484
BspTI CTTAAG 2 cut(s) 650, 905
BspTNI GGTCTC 1 cut(s) 65
BsrDI GCAATG 5 cut(s) 1239, 1464, 1575, 1603, 1617
BsrFI RCCGGY 1 cut(s) 1185
BssAI RCCGGY 1 cut(s) 1185
BssECI CCNNGG 9 cut(s) 375, 447, 488, 549, 1270, 1281, 1374, 1653, 1965
BssMI GATC 7 cut(s) 247, 387, 1158, 1206, 1258, 1483, 1782
BssT1I CCWWGG 7 cut(s) 447, 549, 1270, 1281, 1374, 1653, 1965
Bst2UI CCWGG 3 cut(s) 326, 377, 1367
Bst4CI ACNGT 3 cut(s) 25, 92, 241
Bst6I CTCTTC 3 cut(s) 786, 1487, 1551
BstAFI CTTAAG 2 cut(s) 650, 905
BstBAI YACGTR 1 cut(s) 1046
BstBI TTCGAA 1 cut(s) 147
BstC8I GCNNGC 5 cut(s) 969, 1153, 1278, 1363, 1740
BstDEI CTNAG 9 cut(s) 230, 560, 780, 786, 1007, 1413, 1452, 1707, 1926
BstDSI CCRYGG 1 cut(s) 1653
BstF5I GGATG 9 cut(s) 119, 125, 559, 940, 1134, 1825, 1861, 1918, 2049
BstFNI CGCG 2 cut(s) 362, 1642
BstH2I RGCGCY 1 cut(s) 1152
BstHHI GCGC 3 cut(s) 798, 1151, 1644
BstKTI GATC 7 cut(s) 250, 390, 1161, 1209, 1261, 1486, 1785
BstMAI GTCTC 4 cut(s) 65, 420, 725, 1088
BstMBI GATC 7 cut(s) 247, 387, 1158, 1206, 1258, 1483, 1782
BstMWI GCNNNNNNNGC 9 cut(s) 242, 308, 638, 762, 1081, 1178, 1408, 1463, 1751
BstNI CCWGG 3 cut(s) 326, 377, 1367
BstNSI RCATGY 6 cut(s) 580, 917, 1195, 1280, 1573, 1738
BstSCI CCNGG 3 cut(s) 324, 375, 1365
BstSFI CTRYAG 1 cut(s) 1884
BstSNI TACGTA 1 cut(s) 1046
BstUI CGCG 2 cut(s) 362, 1642
BstV1I GCAGC 8 cut(s) 22, 298, 405, 625, 628, 730, 1754, 1858
BstV2I GAAGAC 2 cut(s) 160, 960
BstXI CCANNNNNNTGG 2 cut(s) 409, 1145
Bsu36I CCTNAGG 1 cut(s) 1413
BsuRI GGCC 6 cut(s) 67, 446, 762, 1118, 1443, 1964
BtgI CCRYGG 1 cut(s) 1653
BtsCI GGATG 9 cut(s) 119, 125, 559, 940, 1134, 1825, 1861, 1918, 2049
BtsI GCAGTG 5 cut(s) 504, 750, 1668, 1881, 1893
BtsIMutI CAGTG 9 cut(s) 21, 504, 750, 1004, 1449, 1500, 1668, 1881, 1893
BtuMI TCGCGA 1 cut(s) 362
Cac8I GCNNGC 5 cut(s) 969, 1153, 1278, 1363, 1740
CciI TCATGA 3 cut(s) 435, 1956, 2040
CfoI GCGC 3 cut(s) 798, 1151, 1644
Cfr10I RCCGGY 1 cut(s) 1185
Cfr13I GGNCC 3 cut(s) 546, 1497, 1617
Csp6I GTAC 6 cut(s) 52, 372, 520, 1043, 1183, 1976
CviQI GTAC 6 cut(s) 52, 372, 520, 1043, 1183, 1976
DdeI CTNAG 9 cut(s) 230, 560, 780, 786, 1007, 1413, 1452, 1707, 1926
DpnI GATC 7 cut(s) 249, 389, 1160, 1208, 1260, 1485, 1784
DpnII GATC 7 cut(s) 247, 387, 1158, 1206, 1258, 1483, 1782
DrdI GACNNNNNNGTC 2 cut(s) 509, 1624
DseDI GACNNNNNNGTC 2 cut(s) 509, 1624
EaeI YGGCCR 2 cut(s) 760, 1962
Eam1104I CTCTTC 3 cut(s) 786, 1487, 1551
EarI CTCTTC 3 cut(s) 786, 1487, 1551
EciI GGCGGA 2 cut(s) 19, 293
Eco105I TACGTA 1 cut(s) 1046
Eco130I CCWWGG 7 cut(s) 447, 549, 1270, 1281, 1374, 1653, 1965
Eco24I GRGCYC 1 cut(s) 1056
Eco31I GGTCTC 1 cut(s) 65
Eco47I GGWCC 3 cut(s) 546, 1497, 1617
Eco57I CTGAAG 2 cut(s) 570, 1196
Eco81I CCTNAGG 1 cut(s) 1413
Eco88I CYCGRG 2 cut(s) 489, 1487
EcoO109I RGGNCCY 1 cut(s) 1617
EcoRI GAATTC 1 cut(s) 143
EcoRII CCWGG 3 cut(s) 324, 375, 1365
EcoT14I CCWWGG 7 cut(s) 447, 549, 1270, 1281, 1374, 1653, 1965
EcoT22I ATGCAT 1 cut(s) 1863
EcoT38I GRGCYC 1 cut(s) 1056
ErhI CCWWGG 7 cut(s) 447, 549, 1270, 1281, 1374, 1653, 1965
Esp3I CGTCTC 1 cut(s) 420
FalI AAGNNNNNCTT 4 cut(s) 674, 706, 1406, 1438
FaqI GGGAC 3 cut(s) 554, 1580, 1803
FauNDI CATATG 1 cut(s) 613
FbaI TGATCA 2 cut(s) 387, 1782
FblI GTMKAC 1 cut(s) 1602
FokI GGATG 9 cut(s) 106, 112, 566, 947, 1121, 1832, 1848, 1925, 2036
FriOI GRGCYC 1 cut(s) 1056
FspBI CTAG 1 cut(s) 1739
GlaI GCGC 3 cut(s) 797, 1150, 1643
GsaI CCCAGC 1 cut(s) 1218
GsuI CTGGAG 5 cut(s) 347, 830, 1388, 1703, 1970
HaeII RGCGCY 1 cut(s) 1152
HaeIII GGCC 6 cut(s) 67, 446, 762, 1118, 1443, 1964
HapII CCGG 3 cut(s) 68, 338, 1186
HhaI GCGC 3 cut(s) 798, 1151, 1644
Hin6I GCGC 3 cut(s) 796, 1149, 1642
HinP1I GCGC 3 cut(s) 796, 1149, 1642
HincII GTYRAC 2 cut(s) 1629, 2007
HindII GTYRAC 2 cut(s) 1629, 2007
HindIII AAGCTT 1 cut(s) 1683
HinfI GANTC 8 cut(s) 305, 466, 975, 1001, 1370, 1559, 1791, 1982
HpaI GTTAAC 1 cut(s) 2007
HpaII CCGG 3 cut(s) 68, 338, 1186
HphI GGTGA 4 cut(s) 80, 490, 1117, 1201
Hpy166II GTNNAC 4 cut(s) 1603, 1629, 1666, 2007
Hpy188I TCNGA 8 cut(s) 10, 233, 387, 563, 892, 980, 1176, 1836
Hpy8I GTNNAC 4 cut(s) 1603, 1629, 1666, 2007
Hpy99I CGWCG 2 cut(s) 14, 245
HpyAV CCTTC 9 cut(s) 746, 844, 1171, 1375, 1381, 1433, 1456, 1735, 1993
HpyCH4III ACNGT 3 cut(s) 25, 92, 241
HpyCH4IV ACGT 3 cut(s) 441, 525, 1045
HpyCH4V TGCA 9 cut(s) 718, 743, 967, 1019, 1224, 1244, 1861, 1886, 1904
HpyF10VI GCNNNNNNNGC 9 cut(s) 242, 308, 638, 762, 1081, 1178, 1408, 1463, 1751
HpyF3I CTNAG 9 cut(s) 230, 560, 780, 786, 1007, 1413, 1452, 1707, 1926
HpySE526I ACGT 3 cut(s) 441, 525, 1045
HspAI GCGC 3 cut(s) 796, 1149, 1642
Ksp22I TGATCA 2 cut(s) 387, 1782
KspAI GTTAAC 1 cut(s) 2007
Kzo9I GATC 7 cut(s) 247, 387, 1158, 1206, 1258, 1483, 1782
LguI GCTCTTC 1 cut(s) 786
LmnI GCTCC 1 cut(s) 849
Lsp1109I GCAGC 8 cut(s) 22, 298, 405, 625, 628, 730, 1754, 1858
LweI GCATC 9 cut(s) 125, 357, 544, 690, 730, 925, 1653, 1810, 1870
MaeI CTAG 1 cut(s) 1739
MaeII ACGT 3 cut(s) 441, 525, 1045
MaeIII GTNAC 2 cut(s) 263, 496
MalI GATC 7 cut(s) 249, 389, 1160, 1208, 1260, 1485, 1784
MboI GATC 7 cut(s) 247, 387, 1158, 1206, 1258, 1483, 1782
MhlI GDGCHC 3 cut(s) 846, 1056, 1717
MlsI TGGCCA 1 cut(s) 1964
MluCI AATT 8 cut(s) 133, 143, 221, 664, 685, 1231, 1264, 1943
MluNI TGGCCA 1 cut(s) 1964
MlyI GAGTC 4 cut(s) 1379, 1568, 1785, 1976
MmeI TCCRAC 4 cut(s) 33, 729, 1071, 1284
Mox20I TGGCCA 1 cut(s) 1964
Mph1103I ATGCAT 1 cut(s) 1863
MscI TGGCCA 1 cut(s) 1964
MseI TTAA 7 cut(s) 422, 651, 906, 1032, 1080, 1542, 2006
MslI CAYNNNNRTG 6 cut(s) 440, 1143, 1580, 1733, 1866, 1886
Msp20I TGGCCA 1 cut(s) 1964
MspA1I CMGCKG 3 cut(s) 35, 765, 1745
MspCI CTTAAG 2 cut(s) 650, 905
MspI CCGG 3 cut(s) 68, 338, 1186
MspR9I CCNGG 3 cut(s) 326, 377, 1367
Mva1269I GAATGC 2 cut(s) 720, 1019
MvaI CCWGG 3 cut(s) 326, 377, 1367
MvnI CGCG 2 cut(s) 362, 1642
MwoI GCNNNNNNNGC 9 cut(s) 242, 308, 638, 762, 1081, 1178, 1408, 1463, 1751
NcoI CCATGG 1 cut(s) 1653
NdeI CATATG 1 cut(s) 613
NdeII GATC 7 cut(s) 247, 387, 1158, 1206, 1258, 1483, 1782
NheI GCTAGC 1 cut(s) 1738
NlaIV GGNNCC 3 cut(s) 460, 486, 1333
NmuCI GTSAC 2 cut(s) 263, 496
NruI TCGCGA 1 cut(s) 362
NsiI ATGCAT 1 cut(s) 1863
NspI RCATGY 6 cut(s) 580, 917, 1195, 1280, 1573, 1738
NspV TTCGAA 1 cut(s) 147
OliI CACNNNNGTG 1 cut(s) 1886
PaeI GCATGC 1 cut(s) 1280
PaeR7I CTCGAG 1 cut(s) 1487
PagI TCATGA 3 cut(s) 435, 1956, 2040
PciI ACATGT 4 cut(s) 576, 913, 1191, 1569
PciSI GCTCTTC 1 cut(s) 786
PcsI WCGNNNNNNNCGW 1 cut(s) 522
PctI GAATGC 2 cut(s) 720, 1019
PfeI GAWTC 4 cut(s) 305, 466, 975, 1001
PleI GAGTC 4 cut(s) 1378, 1567, 1785, 1976
PpsI GAGTC 4 cut(s) 1378, 1567, 1785, 1976
Ppu21I YACGTR 1 cut(s) 1046
PpuMI RGGWCCY 1 cut(s) 1617
PscI ACATGT 4 cut(s) 576, 913, 1191, 1569
Psp5II RGGWCCY 1 cut(s) 1617
Psp6I CCWGG 3 cut(s) 324, 375, 1365
PspFI CCCAGC 1 cut(s) 1214
PspGI CCWGG 3 cut(s) 324, 375, 1365
PspN4I GGNNCC 3 cut(s) 460, 486, 1333
PspPI GGNCC 3 cut(s) 546, 1497, 1617
PspPPI RGGWCCY 1 cut(s) 1617
PstI CTGCAG 1 cut(s) 1888
PvuII CAGCTG 1 cut(s) 1745
RruI TCGCGA 1 cut(s) 362
RsaI GTAC 6 cut(s) 53, 373, 521, 1044, 1184, 1977
RsaNI GTAC 6 cut(s) 52, 372, 520, 1043, 1183, 1976
RseI CAYNNNNRTG 6 cut(s) 440, 1143, 1580, 1733, 1866, 1886
SapI GCTCTTC 1 cut(s) 786
SaqAI TTAA 7 cut(s) 422, 651, 906, 1032, 1080, 1542, 2006
Sau3AI GATC 7 cut(s) 247, 387, 1158, 1206, 1258, 1483, 1782
Sau96I GGNCC 3 cut(s) 546, 1497, 1617
ScaI AGTACT 1 cut(s) 521
SchI GAGTC 4 cut(s) 1379, 1568, 1785, 1976
ScrFI CCNGG 3 cut(s) 326, 377, 1367
SduI GDGCHC 3 cut(s) 846, 1056, 1717
SfaNI GCATC 9 cut(s) 125, 357, 544, 690, 730, 925, 1653, 1810, 1870
SfcI CTRYAG 1 cut(s) 1884
Sfr274I CTCGAG 1 cut(s) 1487
SfuI TTCGAA 1 cut(s) 147
SinI GGWCC 3 cut(s) 546, 1497, 1617
SlaI CTCGAG 1 cut(s) 1487
SmiMI CAYNNNNRTG 6 cut(s) 440, 1143, 1580, 1733, 1866, 1886
SmlI CTYRAG 4 cut(s) 650, 905, 1397, 1487
SmoI CTYRAG 4 cut(s) 650, 905, 1397, 1487
SnaBI TACGTA 1 cut(s) 1046
SphI GCATGC 1 cut(s) 1280
Sse9I AATT 8 cut(s) 133, 143, 221, 664, 685, 1231, 1264, 1943
SsiI CCGC 9 cut(s) 30, 33, 278, 315, 534, 763, 1329, 1528, 1640
SspMI CTAG 1 cut(s) 1739
StyD4I CCNGG 3 cut(s) 324, 375, 1365
StyI CCWWGG 7 cut(s) 447, 549, 1270, 1281, 1374, 1653, 1965
TaaI ACNGT 3 cut(s) 25, 92, 241
TaiI ACGT 3 cut(s) 444, 528, 1048
TaqI TCGA 7 cut(s) 147, 516, 930, 1023, 1296, 1488, 2058
TaqII GACCGA 1 cut(s) 164
TasI AATT 8 cut(s) 133, 143, 221, 664, 685, 1231, 1264, 1943
TatI WGTACW 1 cut(s) 519
TauI GCSGC 5 cut(s) 35, 317, 536, 765, 1642
TfiI GAWTC 4 cut(s) 305, 466, 975, 1001
Tru1I TTAA 7 cut(s) 422, 651, 906, 1032, 1080, 1542, 2006
Tru9I TTAA 7 cut(s) 422, 651, 906, 1032, 1080, 1542, 2006
TscAI CASTG 9 cut(s) 28, 511, 750, 1011, 1456, 1507, 1675, 1888, 1893
TseFI GTSAC 2 cut(s) 263, 496
TseI GCWGC 8 cut(s) 35, 311, 393, 638, 641, 718, 1742, 1871
Tsp45I GTSAC 2 cut(s) 263, 496
TspDTI ATGAA 8 cut(s) 424, 452, 1014, 1475, 1484, 1564, 1717, 2057
TspRI CASTG 9 cut(s) 28, 511, 750, 1011, 1456, 1507, 1675, 1888, 1893
Vha464I CTTAAG 2 cut(s) 650, 905
VpaK11BI GGWCC 3 cut(s) 546, 1497, 1617
XapI RAATTY 3 cut(s) 143, 664, 1943
XceI RCATGY 6 cut(s) 580, 917, 1195, 1280, 1573, 1738
XcmI CCANNNNNNNNNTGG 1 cut(s) 295
XhoI CTCGAG 1 cut(s) 1487
XmiI GTMKAC 1 cut(s) 1602
XspI CTAG 1 cut(s) 1739
ZrmI AGTACT 1 cut(s) 521
Zsp2I ATGCAT 1 cut(s) 1863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.