Rroxscaffold_3G00225220

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000101
Physical Location & Seq
Forward (+)
8421277 .. 8422507
1231 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225220.1

Sequence Viewer

Length: 1146 bp
ATGGAGGACACTAGTTTCCCCAATTCTTGTGCCGATGACCACAAGAAACATGTAATGAAGGTTTTCGAGGAGGCCACCAAAGACTGTGAGGACAAGGTCTTGAAAGAAATTCGGGACTACGACTCCCTTAACAAGTATGCCATTCAACTCTTCAATATATTGGCAAATAACACCCTCGCTGAGGAAGCCAAAGAGCTCTTTAAGCCTTGCTCTGACTCCGCCGTGCTGCCTGATGTTGCCGTCTTCACTATTGTCATTCGGGCCTACGCCTGTGCCGGCAAGACCAAGGCTGCCCTCAAGGTCTACCAGCAGATGATAGCCACCGGTGTCGCCCCCACTTCCTGCACTTACACTATACTCATCACCTCACTTGCAACAGACTCATCATCTTCTGATGTTAATTTCGTTGGGCATGCCAAGAGTCAGTGGAGAAGGCCAGGGGAGTTCCTTGAGCAGATGCAAGCGAAGGGTTTTACCCCTGAGTCCAAAGTTCATCACTTTGAAGAAGGCCACCTCACTGAAGCAATGGATGCAATGAAGTTGTATGATGATCTTGTCAACAAGACCACTGACAAGAAGATGCAAAAAGTCTTCCGCAAGTGGCGTACAGCCGGCGGCCTTGCCAAGAAAGAGTCATTGGAGATGTTGGGTGCTTTGATAGATGATGGCTATGTAGACGAGGCCAACGAGCTTTGTAAGCGCATTTGTGAGACGGGTGTATATCCCATGGTCACAAATCACACCAGCGTTATTCAAGCCTACCTCAAGTTTGGCAAGACCAAGGGTGCTCTGGAGGCATACCGGGGCATGTTAGCTTCAGGGGTTGCTCCAAACTCCTACACTTACACTGTTTTAATCAAGGGACTCACTGTTGACCCCAATTTCTGTGGAGATGCCAAGAAGTGCATTCTTGATATGATGGACAGGGGGATAAGGCCCAATCCTGCTACCTACACTGTGGTGATAGAGGGATTTGCGAAGCAGGAGGACAAGGCAGCTGAGGAGGAGGCCAAAGACTTGGTTGACGTAATGATGAGTAAGGGATTTGTGCCAAACGCAAAGGCTATGATGGAGGTTCTGAAGGGAAGGCCAACTCCTCTTATAAGAAGGGTCATAAACATTGCCCTTTCCAAGTTGAAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

381

Amino Acids

42.25

Weight (kDa)

7.03

Isoelectric Point (pI)

32.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 67 - 122 5.6e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 77 - 125 5e-12 PPR repeat family
TPR_24 PF23276 245 - 331 2.7e-06 Fungal tetratrico peptide repeats
PPR_2 PF13041 248 - 289 1e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1103
AccI GTMKAC 2 cut(s) 303, 675
AciI CCGC 3 cut(s) 219, 595, 615
AcsI RAATTY 1 cut(s) 108
AcuI CTGAAG 3 cut(s) 540, 801, 1100
AfaI GTAC 1 cut(s) 607
AfiI CCNNNNNNNGG 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 49
AgeI ACCGGT 1 cut(s) 323
AgsI TTSAA 6 cut(s) 103, 146, 154, 503, 755, 1138
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 1 cut(s) 436
AjuI GAANNNNNNNTTGG 2 cut(s) 620, 652
AleI CACNNNNGTG 1 cut(s) 959
AluBI AGCT 4 cut(s) 196, 691, 815, 998
AluI AGCT 4 cut(s) 196, 691, 815, 998
Alw21I GWGCWC 2 cut(s) 198, 790
Alw26I GTCTC 1 cut(s) 704
AoxI GGCC 9 cut(s) 72, 261, 434, 508, 616, 681, 935, 1008, 1088
ApeKI GCWGC 3 cut(s) 226, 290, 995
ApoI RAATTY 1 cut(s) 108
AsiGI ACCGGT 1 cut(s) 323
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 1 cut(s) 702
AspS9I GGNCC 2 cut(s) 261, 936
AsuC2I CCSGG 1 cut(s) 803
AsuHPI GGTGA 2 cut(s) 355, 973
BanII GRGCYC 1 cut(s) 198
BbsI GAAGAC 2 cut(s) 235, 583
Bbv12I GWGCWC 2 cut(s) 198, 790
BbvCI CCTCAGC 2 cut(s) 180, 999
BbvI GCAGC 3 cut(s) 213, 277, 1007
BccI CCATC 3 cut(s) 659, 913, 1063
BceAI ACGGC 2 cut(s) 206, 224
BciT130I CCWGG 1 cut(s) 438
BcnI CCSGG 1 cut(s) 803
BcoDI GTCTC 1 cut(s) 704
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 1 cut(s) 12
BisI GCNGC 4 cut(s) 227, 291, 616, 996
BlsI GCNGC 4 cut(s) 228, 292, 617, 997
Bme1390I CCNGG 2 cut(s) 438, 803
BmgT120I GGNCC 2 cut(s) 261, 936
BmrFI CCNGG 2 cut(s) 438, 803
BmsI GCATC 4 cut(s) 447, 520, 570, 883
BpiI GAAGAC 2 cut(s) 235, 583
BpmI CTGGAG 1 cut(s) 812
Bpu10I CCTNAGC 2 cut(s) 180, 999
BpuEI CTTGAG 3 cut(s) 281, 470, 749
BpuMI CCSGG 1 cut(s) 803
BsaJI CCNNGG 5 cut(s) 285, 437, 726, 780, 802
BsaWI WCCGGW 1 cut(s) 323
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse118I RCCGGY 3 cut(s) 275, 323, 611
Bse3DI GCAATG 3 cut(s) 531, 540, 1119
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 5 cut(s) 285, 437, 726, 780, 802
BseGI GGATG 1 cut(s) 535
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 3 cut(s) 531, 540, 1119
BseMII CTCAG 3 cut(s) 171, 471, 990
BseRI GAGGAG 4 cut(s) 83, 1016, 1019, 1086
BseXI GCAGC 3 cut(s) 213, 277, 1007
BsgI GTGCAG 1 cut(s) 328
BshFI GGCC 9 cut(s) 74, 263, 436, 510, 618, 683, 937, 1010, 1090
BshTI ACCGGT 1 cut(s) 323
BsiHKAI GWGCWC 2 cut(s) 198, 790
BsiSI CCGG 4 cut(s) 276, 324, 612, 802
BslFI GGGAC 2 cut(s) 128, 876
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 704
BsmBI CGTCTC 1 cut(s) 704
BsmFI GGGAC 2 cut(s) 128, 876
BsmI GAATGC 1 cut(s) 906
BsnI GGCC 9 cut(s) 74, 263, 436, 510, 618, 683, 937, 1010, 1090
Bsp1286I GDGCHC 2 cut(s) 198, 790
Bsp143I GATC 1 cut(s) 550
Bsp19I CCATGG 1 cut(s) 726
BspACI CCGC 3 cut(s) 219, 595, 615
BspANI GGCC 9 cut(s) 74, 263, 436, 510, 618, 683, 937, 1010, 1090
BspCNI CTCAG 3 cut(s) 172, 472, 991
BsrDI GCAATG 3 cut(s) 531, 540, 1119
BsrFI RCCGGY 3 cut(s) 275, 323, 611
BssAI RCCGGY 3 cut(s) 275, 323, 611
BssECI CCNNGG 5 cut(s) 285, 437, 726, 780, 802
BssMI GATC 1 cut(s) 550
BssT1I CCWWGG 3 cut(s) 285, 726, 780
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 4 cut(s) 86, 850, 871, 958
Bst6I CTCTTC 1 cut(s) 155
BstAPI GCANNNNNTGC 1 cut(s) 530
BstC8I GCNNGC 4 cut(s) 277, 414, 462, 613
BstDEI CTNAG 3 cut(s) 180, 480, 999
BstDSI CCRYGG 1 cut(s) 726
BstENI CCTNNNNNAGG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 535
BstHHI GCGC 1 cut(s) 702
BstKTI GATC 1 cut(s) 553
BstMAI GTCTC 1 cut(s) 704
BstMBI GATC 1 cut(s) 550
BstMWI GCNNNNNNNGC 5 cut(s) 185, 202, 530, 697, 794
BstNI CCWGG 1 cut(s) 438
BstNSI RCATGY 3 cut(s) 53, 416, 811
BstSCI CCNGG 2 cut(s) 436, 801
BstV1I GCAGC 3 cut(s) 213, 277, 1007
BstV2I GAAGAC 2 cut(s) 235, 583
BstXI CCANNNNNNTGG 1 cut(s) 1018
BsuRI GGCC 9 cut(s) 74, 263, 436, 510, 618, 683, 937, 1010, 1090
BtgI CCRYGG 1 cut(s) 726
BtsCI GGATG 1 cut(s) 535
BtsIMutI CAGTG 6 cut(s) 431, 516, 567, 846, 867, 954
Cac8I GCNNGC 4 cut(s) 277, 414, 462, 613
CfoI GCGC 1 cut(s) 702
Cfr10I RCCGGY 3 cut(s) 275, 323, 611
Cfr13I GGNCC 2 cut(s) 261, 936
Csp6I GTAC 1 cut(s) 606
CspAI ACCGGT 1 cut(s) 323
CspCI CAANNNNNGTGG 2 cut(s) 868, 903
CviAII CATG 4 cut(s) 50, 413, 727, 808
CviQI GTAC 1 cut(s) 606
DdeI CTNAG 3 cut(s) 180, 480, 999
DpnI GATC 1 cut(s) 552
DpnII GATC 1 cut(s) 550
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
EciI GGCGGA 1 cut(s) 208
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 3 cut(s) 285, 726, 780
Eco24I GRGCYC 1 cut(s) 198
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 3 cut(s) 540, 801, 1100
EcoICRI GAGCTC 1 cut(s) 196
EcoNI CCTNNNNNAGG 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 436
EcoT14I CCWWGG 3 cut(s) 285, 726, 780
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 3 cut(s) 285, 726, 780
Esp3I CGTCTC 1 cut(s) 704
FaeI CATG 4 cut(s) 53, 416, 730, 811
FaqI GGGAC 2 cut(s) 128, 876
FatI CATG 4 cut(s) 49, 412, 726, 807
FblI GTMKAC 2 cut(s) 303, 675
Fnu4HI GCNGC 4 cut(s) 227, 291, 616, 996
FokI GGATG 1 cut(s) 542
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 4 cut(s) 227, 291, 616, 996
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 701
GluI GCNGC 4 cut(s) 227, 291, 616, 996
GsuI CTGGAG 1 cut(s) 812
HaeIII GGCC 9 cut(s) 74, 263, 436, 510, 618, 683, 937, 1010, 1090
HapII CCGG 4 cut(s) 276, 324, 612, 802
HhaI GCGC 1 cut(s) 702
Hin1II CATG 4 cut(s) 53, 416, 730, 811
Hin6I GCGC 1 cut(s) 700
HinP1I GCGC 1 cut(s) 700
HincII GTYRAC 3 cut(s) 559, 874, 1024
HindII GTYRAC 3 cut(s) 559, 874, 1024
HinfI GANTC 7 cut(s) 122, 215, 380, 421, 482, 632, 864
HpaII CCGG 4 cut(s) 276, 324, 612, 802
HphI GGTGA 2 cut(s) 355, 973
Hpy166II GTNNAC 5 cut(s) 304, 559, 676, 874, 1024
Hpy188I TCNGA 3 cut(s) 214, 394, 1080
Hpy188III TCNNGA 4 cut(s) 100, 113, 791, 911
Hpy8I GTNNAC 5 cut(s) 304, 559, 676, 874, 1024
HpyAV CCTTC 8 cut(s) 52, 426, 460, 500, 1075, 1080, 1101, 1132
HpyCH4III ACNGT 4 cut(s) 86, 850, 871, 958
HpyCH4IV ACGT 1 cut(s) 1026
HpyCH4V TGCA 6 cut(s) 345, 374, 460, 533, 583, 906
HpyF10VI GCNNNNNNNGC 5 cut(s) 185, 202, 530, 697, 794
HpyF3I CTNAG 3 cut(s) 180, 480, 999
HpySE526I ACGT 1 cut(s) 1026
Hsp92II CATG 4 cut(s) 53, 416, 730, 811
HspAI GCGC 1 cut(s) 700
KroI GCCGGC 2 cut(s) 275, 611
KroNI GCCGGC 2 cut(s) 277, 613
Kzo9I GATC 1 cut(s) 550
LmnI GCTCC 1 cut(s) 832
Lsp1109I GCAGC 3 cut(s) 213, 277, 1007
LweI GCATC 4 cut(s) 447, 520, 570, 883
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 1026
MaeIII GTNAC 1 cut(s) 730
MalI GATC 1 cut(s) 552
MboI GATC 1 cut(s) 550
MboII GAAGA 6 cut(s) 142, 235, 381, 515, 583, 589
MhlI GDGCHC 2 cut(s) 198, 790
MluCI AATT 4 cut(s) 22, 108, 400, 880
MlyI GAGTC 7 cut(s) 116, 209, 374, 430, 491, 641, 858
MroNI GCCGGC 2 cut(s) 275, 611
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 4 cut(s) 129, 201, 399, 854
MslI CAYNNNNRTG 1 cut(s) 959
MspA1I CMGCKG 1 cut(s) 998
MspI CCGG 4 cut(s) 276, 324, 612, 802
MspR9I CCNGG 2 cut(s) 438, 803
Mva1269I GAATGC 1 cut(s) 906
MvaI CCWGG 1 cut(s) 438
MwoI GCNNNNNNNGC 5 cut(s) 185, 202, 530, 697, 794
NaeI GCCGGC 2 cut(s) 277, 613
NciI CCSGG 1 cut(s) 803
NcoI CCATGG 1 cut(s) 726
NdeII GATC 1 cut(s) 550
NgoMIV GCCGGC 2 cut(s) 275, 611
NlaIII CATG 4 cut(s) 53, 416, 730, 811
NmuCI GTSAC 1 cut(s) 730
NspI RCATGY 3 cut(s) 53, 416, 811
OliI CACNNNNGTG 1 cut(s) 959
PaeI GCATGC 1 cut(s) 416
PciI ACATGT 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 684
PctI GAATGC 1 cut(s) 906
PdiI GCCGGC 2 cut(s) 277, 613
PdmI GAANNNNTTC 1 cut(s) 62
PflFI GACNNNGTC 1 cut(s) 95
PinAI ACCGGT 1 cut(s) 323
PkrI GCNGC 4 cut(s) 228, 292, 617, 997
PleI GAGTC 7 cut(s) 116, 209, 374, 429, 490, 640, 858
PpsI GAGTC 7 cut(s) 116, 209, 374, 429, 490, 640, 858
PscI ACATGT 1 cut(s) 49
PsiI TTATAA 1 cut(s) 1103
Psp124BI GAGCTC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspPI GGNCC 2 cut(s) 261, 936
PsyI GACNNNGTC 1 cut(s) 95
PvuII CAGCTG 1 cut(s) 998
RsaI GTAC 1 cut(s) 607
RsaNI GTAC 1 cut(s) 606
RseI CAYNNNNRTG 1 cut(s) 959
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 4 cut(s) 129, 201, 399, 854
SatI GCNGC 4 cut(s) 227, 291, 616, 996
Sau3AI GATC 1 cut(s) 550
Sau96I GGNCC 2 cut(s) 261, 936
SchI GAGTC 7 cut(s) 116, 209, 374, 430, 491, 641, 858
ScrFI CCNGG 2 cut(s) 438, 803
SduI GDGCHC 2 cut(s) 198, 790
SfaNI GCATC 4 cut(s) 447, 520, 570, 883
SgrAI CRCCGGYG 1 cut(s) 323
SmiMI CAYNNNNRTG 1 cut(s) 959
SmlI CTYRAG 3 cut(s) 296, 449, 764
SmoI CTYRAG 3 cut(s) 296, 449, 764
SpeI ACTAGT 1 cut(s) 11
SphI GCATGC 1 cut(s) 416
Sse9I AATT 4 cut(s) 22, 108, 400, 880
SsiI CCGC 3 cut(s) 219, 595, 615
SspMI CTAG 1 cut(s) 12
SstI GAGCTC 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 436, 801
StyI CCWWGG 3 cut(s) 285, 726, 780
TaaI ACNGT 4 cut(s) 86, 850, 871, 958
TaiI ACGT 1 cut(s) 1029
TaqI TCGA 1 cut(s) 66
TasI AATT 4 cut(s) 22, 108, 400, 880
TauI GCSGC 1 cut(s) 618
Tru1I TTAA 4 cut(s) 129, 201, 399, 854
Tru9I TTAA 4 cut(s) 129, 201, 399, 854
TscAI CASTG 6 cut(s) 431, 523, 574, 853, 874, 961
TseFI GTSAC 1 cut(s) 730
TseI GCWGC 3 cut(s) 226, 290, 995
Tsp45I GTSAC 1 cut(s) 730
TspDTI ATGAA 3 cut(s) 71, 482, 551
TspRI CASTG 6 cut(s) 431, 523, 574, 853, 874, 961
Tth111I GACNNNGTC 1 cut(s) 95
XagI CCTNNNNNAGG 1 cut(s) 179
XapI RAATTY 1 cut(s) 108
XceI RCATGY 3 cut(s) 53, 416, 811
XcmI CCANNNNNNNNNTGG 1 cut(s) 787
XmiI GTMKAC 2 cut(s) 303, 675
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.