RLG00000001108

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000101
Physical Location & Seq
Reverse (-)
10421097 .. 10423464
2368 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001108

Sequence Viewer

Length: 1395 bp
ATGGAGGACACTAGTTTCCCCAATTCTTGTGCCGATGGCCTCAAGAAACACGTAATGAAGGTTTTCGAGGAGGCCACCAAACACTGCGAGGACAAGGAAGTGAAGGAAATATTTGACTCCATTGGGGACTATGACGACCTTAATGAATTTGGGATCCAAATGTTCAATTTGTTGGCAAATTTCGGCCAGGCTAATGAAGCCAAAGAGTTGTTTAGGCCTCTCTCTGTGCCGGACGTGGCTGTCCTCACAATGGTCATTCTGGTCTACACCCATGCCGGAAAGGCCAAGGCTGCTCTCAAGGCCTATCAGCACATGATAGCCATTGGTGTCACCCCCACCTCCGCTACTTACAATGCACTCATCACAGCATTCGCAGAAGACTCATCTTCTGGTTCCAATTTTGTTGGCTATGCTAAGAAGTATTTTTTGGAAATGTTGGATAAGGGGATGAAGCCCAATCCTGGTTGCTATATATCTGTGTTTGACGCCATTGCCTGTCGTGAGTCAGTGAACAAGGCCAAGGAGTTCCTTGAGCAGATAAAAGCAAAGGGGTTTACTCCCGTCAACAATCTTTATCGCTTTGAAGAACGGCACCTAACAGAAGCAGTCAAGGCAATCAGGATGTACAATGATCTCGTCAACAACACCATCGACAAGGATTTGAGAAAGGTCTTCTGCAAGTGGCGCATCCGTGGCCTCAAGAAAGAAGCATTGAGGATGTTCTTTGCTTTGGTAGATGATGGAGACGTAGACGAGGTCAAGGAGATTGTTAGGCCCACCCTTGAGACAGGGGTAGAATCCATGGTTGTAATACACACCTCCATTATTAAGGCCTACCTCGATGCTGGAAAGACCAGGGGAGCTCTCGAGGCCTACCGTGGCATATTAGCTGCTGGGGTTGCCCCCAACTCCTACACTTACATTGTTTTAATCAAGGGACTCACTGCTGACCCCAACTTTTTTGAAGATGCCAAGAAGTGCTTGCTTGAGATGATGGACAAGGGGAGGCGGCCCAATGCTGCTACTTATACTGCGGTGATAGAGGCCTTTGCAAGGCAGGAGGACAAGGCAGCTGAGGAGGAGGGAAAATATTTGGTGGAAGTGATGATGAGTAAGGGGTTTGTGCCTAATGCAAAAGCAATGAGGGAGGTTCTAAAGGAACGGCCAACAGATCACTCCCGCGGGGGGGTGGGGTGGTCTCGTTTTGGGGACTGGGCTTTAGGATATGTCCATGGCCTCAGACTTGCCTGTGAGCTTGGTTGCAGAGTTGTGGACGTGGATCCTGACTCTAGTTTTGTTGTTTCCATGGCTTGCAAGGGTTACATCCTCTCTACAGCTTCAGATAGAACTACAAAGGGTTGGTTGGAGGAATTGAACTGGGTTCCTGCCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

465

Amino Acids

51.79

Weight (kDa)

6.07

Isoelectric Point (pI)

26.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 77 - 125 1.6e-07 PPR repeat family
TPR_24 PF23276 268 - 356 4.6e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 269 - 314 7.5e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 239
AccB1I GGYRCC 1 cut(s) 591
AccI GTMKAC 2 cut(s) 264, 750
AccII CGCG 1 cut(s) 1182
AciI CCGC 5 cut(s) 342, 1009, 1034, 1180, 1182
AclWI GGATC 4 cut(s) 148, 161, 1274, 1287
AcoI YGGCCR 2 cut(s) 184, 1163
AcsI RAATTY 2 cut(s) 146, 178
AcuI CTGAAG 1 cut(s) 1323
AcyI GRCGYC 1 cut(s) 486
AfaI GTAC 1 cut(s) 626
AfiI CCNNNNNNNGG 5 cut(s) 250, 461, 1053, 1185, 1186
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 4 cut(s) 166, 584, 965, 1375
AhlI ACTAGT 1 cut(s) 11
AjiI CACGTC 2 cut(s) 235, 1276
AjnI CCWGG 3 cut(s) 186, 460, 854
AjuI GAANNNNNNNTTGG 2 cut(s) 410, 442
AluBI AGCT 5 cut(s) 863, 890, 1073, 1255, 1337
AluI AGCT 5 cut(s) 863, 890, 1073, 1255, 1337
Alw21I GWGCWC 1 cut(s) 865
Alw26I GTCTC 3 cut(s) 738, 779, 1203
AlwI GGATC 4 cut(s) 148, 161, 1274, 1287
Ama87I CYCGRG 1 cut(s) 866
ApeKI GCWGC 4 cut(s) 290, 890, 1019, 1070
ApoI RAATTY 2 cut(s) 146, 178
ArsI GACNNNNNNTTYG 2 cut(s) 1277, 1309
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 1 cut(s) 687
AspS9I GGNCC 2 cut(s) 774, 1011
AsuHPI GGTGA 2 cut(s) 322, 1048
AvaI CYCGRG 1 cut(s) 866
BamHI GGATCC 2 cut(s) 153, 1279
BanI GGYRCC 1 cut(s) 591
BanII GRGCYC 1 cut(s) 865
BbsI GAAGAC 2 cut(s) 384, 664
Bbv12I GWGCWC 1 cut(s) 865
BbvCI CCTCAGC 1 cut(s) 1074
BbvI GCAGC 4 cut(s) 277, 877, 1006, 1082
BccI CCATC 4 cut(s) 29, 656, 734, 988
BceAI ACGGC 2 cut(s) 605, 1178
BciT130I CCWGG 3 cut(s) 188, 462, 856
BcoDI GTCTC 3 cut(s) 738, 779, 1203
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 1290
BfmI CTRYAG 1 cut(s) 1332
BglI GCCNNNNNGGC 1 cut(s) 281
BisI GCNGC 5 cut(s) 291, 891, 1010, 1020, 1071
BlsI GCNGC 5 cut(s) 292, 892, 1011, 1021, 1072
Bme1390I CCNGG 3 cut(s) 188, 462, 856
BmeT110I CYCGRG 1 cut(s) 866
BmgBI CACGTC 2 cut(s) 235, 1276
BmgT120I GGNCC 2 cut(s) 774, 1011
BmiI GGNNCC 5 cut(s) 155, 394, 593, 1281, 1383
BmrFI CCNGG 3 cut(s) 188, 462, 856
BmrI ACTGGG 2 cut(s) 1222, 1387
BmsI GCATC 3 cut(s) 696, 832, 958
BmuI ACTGGG 2 cut(s) 1222, 1387
BpiI GAAGAC 2 cut(s) 384, 664
Bpu10I CCTNAGC 1 cut(s) 1074
BpuEI CTTGAG 6 cut(s) 26, 281, 551, 683, 803, 1007
BsaAI YACGTR 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 486
BsaI GGTCTC 1 cut(s) 1203
BsaJI CCNNGG 9 cut(s) 285, 519, 691, 801, 855, 877, 1180, 1231, 1305
Bsc4I CCNNNNNNNGG 5 cut(s) 250, 461, 1053, 1185, 1186
Bse1I ACTGG 2 cut(s) 1217, 1382
Bse3DI GCAATG 2 cut(s) 489, 1146
BseBI CCWGG 3 cut(s) 188, 462, 856
BseDI CCNNGG 9 cut(s) 285, 519, 691, 801, 855, 877, 1180, 1231, 1305
BseGI GGATG 5 cut(s) 453, 627, 687, 723, 1323
BseLI CCNNNNNNNGG 5 cut(s) 250, 461, 1053, 1185, 1186
BseMI GCAATG 2 cut(s) 489, 1146
BseMII CTCAG 2 cut(s) 1065, 1252
BseNI ACTGG 2 cut(s) 1217, 1382
BseRI GAGGAG 3 cut(s) 83, 1091, 1094
BseXI GCAGC 4 cut(s) 277, 877, 1006, 1082
BseYI CCCAGC 1 cut(s) 893
Bsh1236I CGCG 1 cut(s) 1182
BshNI GGYRCC 1 cut(s) 591
BsiHKAI GWGCWC 1 cut(s) 865
BsiHKCI CYCGRG 1 cut(s) 866
BsiSI CCGG 2 cut(s) 230, 276
BslFI GGGAC 3 cut(s) 140, 951, 1223
BslI CCNNNNNNNGG 5 cut(s) 250, 461, 1053, 1185, 1186
BsmAI GTCTC 3 cut(s) 738, 779, 1203
BsmBI CGTCTC 1 cut(s) 738
BsmFI GGGAC 3 cut(s) 140, 951, 1223
BsmI GAATGC 1 cut(s) 368
Bso31I GGTCTC 1 cut(s) 1203
BsoBI CYCGRG 1 cut(s) 866
Bsp1286I GDGCHC 1 cut(s) 865
Bsp1407I TGTACA 1 cut(s) 624
Bsp143I GATC 4 cut(s) 153, 631, 1171, 1279
Bsp19I CCATGG 3 cut(s) 801, 1231, 1305
BspACI CCGC 5 cut(s) 342, 1009, 1034, 1180, 1182
BspCNI CTCAG 2 cut(s) 1066, 1251
BspFNI CGCG 1 cut(s) 1182
BspLI GGNNCC 5 cut(s) 155, 394, 593, 1281, 1383
BspPI GGATC 4 cut(s) 148, 161, 1274, 1287
BspT107I GGYRCC 1 cut(s) 591
BspTNI GGTCTC 1 cut(s) 1203
BsrDI GCAATG 2 cut(s) 489, 1146
BsrGI TGTACA 1 cut(s) 624
BsrI ACTGG 2 cut(s) 1217, 1382
BssECI CCNNGG 9 cut(s) 285, 519, 691, 801, 855, 877, 1180, 1231, 1305
BssMI GATC 4 cut(s) 153, 631, 1171, 1279
BssNI GRCGYC 1 cut(s) 486
BssT1I CCWWGG 5 cut(s) 285, 519, 801, 1231, 1305
Bst2UI CCWGG 3 cut(s) 188, 462, 856
Bst4CI ACNGT 1 cut(s) 878
BstACI GRCGYC 1 cut(s) 486
BstAUI TGTACA 1 cut(s) 624
BstBAI YACGTR 1 cut(s) 52
BstC8I GCNNGC 2 cut(s) 983, 1312
BstDEI CTNAG 3 cut(s) 414, 1074, 1238
BstDSI CCRYGG 6 cut(s) 691, 801, 877, 1180, 1231, 1305
BstENI CCTNNNNNAGG 1 cut(s) 1051
BstF5I GGATG 5 cut(s) 453, 627, 687, 723, 1323
BstFNI CGCG 1 cut(s) 1182
BstHHI GCGC 1 cut(s) 687
BstKTI GATC 4 cut(s) 156, 634, 1174, 1282
BstMAI GTCTC 3 cut(s) 738, 779, 1203
BstMBI GATC 4 cut(s) 153, 631, 1171, 1279
BstMWI GCNNNNNNNGC 9 cut(s) 197, 281, 290, 299, 611, 684, 693, 869, 899
BstNI CCWGG 3 cut(s) 188, 462, 856
BstSCI CCNGG 3 cut(s) 186, 460, 854
BstSFI CTRYAG 1 cut(s) 1332
BstUI CGCG 1 cut(s) 1182
BstV1I GCAGC 4 cut(s) 277, 877, 1006, 1082
BstV2I GAAGAC 2 cut(s) 384, 664
BstX2I RGATCY 2 cut(s) 153, 1279
BstYI RGATCY 2 cut(s) 153, 1279
BtgI CCRYGG 6 cut(s) 691, 801, 877, 1180, 1231, 1305
BtrI CACGTC 2 cut(s) 235, 1276
BtsCI GGATG 5 cut(s) 453, 627, 687, 723, 1323
BtsI GCAGTG 2 cut(s) 82, 942
BtsIMutI CAGTG 3 cut(s) 82, 513, 942
Cac8I GCNNGC 2 cut(s) 983, 1312
CfoI GCGC 1 cut(s) 687
Cfr13I GGNCC 2 cut(s) 774, 1011
Cfr42I CCGCGG 1 cut(s) 1183
CseI GACGC 1 cut(s) 494
Csp6I GTAC 1 cut(s) 625
CviAII CATG 5 cut(s) 272, 313, 802, 1232, 1306
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 3 cut(s) 414, 1074, 1238
DpnI GATC 4 cut(s) 155, 633, 1173, 1281
DpnII GATC 4 cut(s) 153, 631, 1171, 1279
DrdI GACNNNNNNGTC 1 cut(s) 239
DseDI GACNNNNNNGTC 1 cut(s) 239
EaeI YGGCCR 2 cut(s) 184, 1163
Ecl136II GAGCTC 1 cut(s) 863
Eco130I CCWWGG 5 cut(s) 285, 519, 801, 1231, 1305
Eco147I AGGCCT 5 cut(s) 217, 302, 833, 872, 1046
Eco24I GRGCYC 1 cut(s) 865
Eco31I GGTCTC 1 cut(s) 1203
Eco53kI GAGCTC 1 cut(s) 863
Eco57I CTGAAG 1 cut(s) 1323
Eco88I CYCGRG 1 cut(s) 866
EcoICRI GAGCTC 1 cut(s) 863
EcoNI CCTNNNNNAGG 1 cut(s) 1051
EcoRII CCWGG 3 cut(s) 186, 460, 854
EcoT14I CCWWGG 5 cut(s) 285, 519, 801, 1231, 1305
EcoT38I GRGCYC 1 cut(s) 865
ErhI CCWWGG 5 cut(s) 285, 519, 801, 1231, 1305
Esp3I CGTCTC 1 cut(s) 738
FaeI CATG 5 cut(s) 275, 316, 805, 1235, 1309
FalI AAGNNNNNCTT 2 cut(s) 965, 997
FaqI GGGAC 3 cut(s) 140, 951, 1223
FatI CATG 5 cut(s) 271, 312, 801, 1231, 1305
FauI CCCGC 2 cut(s) 1175, 1187
FblI GTMKAC 2 cut(s) 264, 750
Fnu4HI GCNGC 5 cut(s) 291, 891, 1010, 1020, 1071
FokI GGATG 5 cut(s) 460, 634, 674, 730, 1310
FriOI GRGCYC 1 cut(s) 865
Fsp4HI GCNGC 5 cut(s) 291, 891, 1010, 1020, 1071
FspBI CTAG 2 cut(s) 12, 1290
GlaI GCGC 1 cut(s) 686
GluI GCNGC 5 cut(s) 291, 891, 1010, 1020, 1071
GsaI CCCAGC 1 cut(s) 897
HapII CCGG 2 cut(s) 230, 276
HgaI GACGC 1 cut(s) 494
HhaI GCGC 1 cut(s) 687
Hin1I GRCGYC 1 cut(s) 486
Hin1II CATG 5 cut(s) 275, 316, 805, 1235, 1309
Hin6I GCGC 1 cut(s) 685
HinP1I GCGC 1 cut(s) 685
HincII GTYRAC 2 cut(s) 565, 640
HindII GTYRAC 2 cut(s) 565, 640
HinfI GANTC 6 cut(s) 116, 380, 503, 797, 939, 1286
HpaII CCGG 2 cut(s) 230, 276
HphI GGTGA 2 cut(s) 322, 1048
Hpy166II GTNNAC 7 cut(s) 265, 511, 555, 565, 640, 751, 1273
Hpy188I TCNGA 2 cut(s) 1241, 1342
Hpy188III TCNNGA 6 cut(s) 43, 500, 619, 700, 866, 1283
Hpy8I GTNNAC 7 cut(s) 265, 511, 555, 565, 640, 751, 1273
HpyAV CCTTC 2 cut(s) 52, 97
HpyCH4III ACNGT 1 cut(s) 878
HpyCH4IV ACGT 4 cut(s) 51, 234, 747, 1275
HpyCH4V TGCA 6 cut(s) 356, 678, 1052, 1133, 1263, 1314
HpyF10VI GCNNNNNNNGC 9 cut(s) 197, 281, 290, 299, 611, 684, 693, 869, 899
HpyF3I CTNAG 3 cut(s) 414, 1074, 1238
HpySE526I ACGT 4 cut(s) 51, 234, 747, 1275
Hsp92I GRCGYC 1 cut(s) 486
Hsp92II CATG 5 cut(s) 275, 316, 805, 1235, 1309
HspAI GCGC 1 cut(s) 685
KspI CCGCGG 1 cut(s) 1183
Kzo9I GATC 4 cut(s) 153, 631, 1171, 1279
LmnI GCTCC 1 cut(s) 860
Lsp1109I GCAGC 4 cut(s) 277, 877, 1006, 1082
LweI GCATC 3 cut(s) 696, 832, 958
MaeI CTAG 2 cut(s) 12, 1290
MaeII ACGT 4 cut(s) 51, 234, 747, 1275
MaeIII GTNAC 2 cut(s) 328, 1319
MalI GATC 4 cut(s) 155, 633, 1173, 1281
MboI GATC 4 cut(s) 153, 631, 1171, 1279
MboII GAAGA 5 cut(s) 378, 389, 596, 664, 977
MflI RGATCY 2 cut(s) 153, 1279
MhlI GDGCHC 1 cut(s) 865
MluCI AATT 6 cut(s) 22, 146, 166, 178, 397, 1370
MlyI GAGTC 5 cut(s) 110, 374, 512, 933, 1280
MmeI TCCRAC 2 cut(s) 417, 1344
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 3 cut(s) 141, 828, 929
MspA1I CMGCKG 2 cut(s) 1073, 1182
MspI CCGG 2 cut(s) 230, 276
MspR9I CCNGG 3 cut(s) 188, 462, 856
Mva1269I GAATGC 1 cut(s) 368
MvaI CCWGG 3 cut(s) 188, 462, 856
MvnI CGCG 1 cut(s) 1182
MwoI GCNNNNNNNGC 9 cut(s) 197, 281, 290, 299, 611, 684, 693, 869, 899
NcoI CCATGG 3 cut(s) 801, 1231, 1305
NdeII GATC 4 cut(s) 153, 631, 1171, 1279
NlaIII CATG 5 cut(s) 275, 316, 805, 1235, 1309
NlaIV GGNNCC 5 cut(s) 155, 394, 593, 1281, 1383
NmuCI GTSAC 1 cut(s) 328
PaeR7I CTCGAG 1 cut(s) 866
PceI AGGCCT 5 cut(s) 217, 302, 833, 872, 1046
PctI GAATGC 1 cut(s) 368
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 797
PflFI GACNNNGTC 1 cut(s) 755
PkrI GCNGC 5 cut(s) 292, 892, 1011, 1021, 1072
PleI GAGTC 5 cut(s) 110, 374, 511, 933, 1280
PpsI GAGTC 5 cut(s) 110, 374, 511, 933, 1280
Ppu21I YACGTR 1 cut(s) 52
Psp124BI GAGCTC 1 cut(s) 865
Psp6I CCWGG 3 cut(s) 186, 460, 854
PspFI CCCAGC 1 cut(s) 893
PspGI CCWGG 3 cut(s) 186, 460, 854
PspN4I GGNNCC 5 cut(s) 155, 394, 593, 1281, 1383
PspPI GGNCC 2 cut(s) 774, 1011
PsuI RGATCY 2 cut(s) 153, 1279
PsyI GACNNNGTC 1 cut(s) 755
PvuII CAGCTG 1 cut(s) 1073
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
SacI GAGCTC 1 cut(s) 865
SacII CCGCGG 1 cut(s) 1183
SaqAI TTAA 3 cut(s) 141, 828, 929
SatI GCNGC 5 cut(s) 291, 891, 1010, 1020, 1071
Sau3AI GATC 4 cut(s) 153, 631, 1171, 1279
Sau96I GGNCC 2 cut(s) 774, 1011
SchI GAGTC 5 cut(s) 110, 374, 512, 933, 1280
ScrFI CCNGG 3 cut(s) 188, 462, 856
SduI GDGCHC 1 cut(s) 865
SfaNI GCATC 3 cut(s) 696, 832, 958
SfcI CTRYAG 1 cut(s) 1332
Sfr274I CTCGAG 1 cut(s) 866
Sfr303I CCGCGG 1 cut(s) 1183
SgrBI CCGCGG 1 cut(s) 1183
SlaI CTCGAG 1 cut(s) 866
SmlI CTYRAG 7 cut(s) 41, 296, 530, 698, 782, 866, 986
SmoI CTYRAG 7 cut(s) 41, 296, 530, 698, 782, 866, 986
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 6 cut(s) 22, 146, 166, 178, 397, 1370
SseBI AGGCCT 5 cut(s) 217, 302, 833, 872, 1046
SsiI CCGC 5 cut(s) 342, 1009, 1034, 1180, 1182
SspI AATATT 2 cut(s) 111, 1091
SspMI CTAG 2 cut(s) 12, 1290
SstI GAGCTC 1 cut(s) 865
StuI AGGCCT 5 cut(s) 217, 302, 833, 872, 1046
StyD4I CCNGG 3 cut(s) 186, 460, 854
StyI CCWWGG 5 cut(s) 285, 519, 801, 1231, 1305
TaaI ACNGT 1 cut(s) 878
TaiI ACGT 4 cut(s) 54, 237, 750, 1278
TaqI TCGA 4 cut(s) 66, 651, 840, 867
TasI AATT 6 cut(s) 22, 146, 166, 178, 397, 1370
TatI WGTACW 1 cut(s) 624
TauI GCSGC 1 cut(s) 1012
TfiI GAWTC 1 cut(s) 797
Tru1I TTAA 3 cut(s) 141, 828, 929
Tru9I TTAA 3 cut(s) 141, 828, 929
TscAI CASTG 3 cut(s) 89, 513, 949
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 4 cut(s) 290, 890, 1019, 1070
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 4 cut(s) 71, 159, 210, 464
TspGWI ACGGA 1 cut(s) 680
TspRI CASTG 3 cut(s) 89, 513, 949
Tth111I GACNNNGTC 1 cut(s) 755
XagI CCTNNNNNAGG 1 cut(s) 1051
XapI RAATTY 2 cut(s) 146, 178
XhoI CTCGAG 1 cut(s) 866
XmiI GTMKAC 2 cut(s) 264, 750
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 2 cut(s) 12, 1290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.