RLG00000001128

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000101
Physical Location & Seq
Reverse (-)
10576505 .. 10583047
6543 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001128

Sequence Viewer

Length: 1068 bp
ATGGCGGAAACTAGTTCCCCCAATTCGTCTGCTGATGACCTCAAGAAAAATGTAATGAAGATTTTCGAGGAAGCCACCAAAGACTGTGAGGACGAGTGCTTGAAAAGAGTATTTGGCACCATTGGGAGGAGCTACGATTCCCTTAACGATTTTTCGATTAAGTTGTTCAATTCTATGGCAGATACCGGCATCATTGACCGAGCCAGAGAGATGTTTAAGCCTGTCTCTGACTTGGGCATTCTGTCTCCAGTGGCTGTCTTCACCATTGTGATTATGACCTACGCCGGTAATCGCAAGGCCAAGAGTGCTCTCAAGGTCTACCAGCACATGATAGCCACTGAGCCAGTGGAGAAGGCCAAGGAGTTCCTTGAGCAGATAAAAGCCAAGGGGTTCATGCCTTCCGACAGTGGTTTTCACTACAAAGAAGCCTACCTCGCAGAAGGAATGCAGACACTGAAGATGTATGCTGATCTTGTCCACAATGAGACCATTGACAAGGATGTTAGAAAGTACTTCTACGTGTTGCGCGCCTGCCCTGGCCACGCTGAAAAACTGGGGAGCATAATGTACACTGCTTTGATAGATGATGGAAATATAGATGAGGCCTCGGAGTTCTTTAACGAAATTGAGGAGACGGGTATAGAGCCCATGGTCCTAATCCACACCGCTGTTATTGAAGCCTATCTCTCGTTTGGCAAGACCAAGGGTGCTCTGGAGGCATACCTGGCCATGTTAGCTGCTGGGGTTGCCCCCAACTCCTACACTTACACTATGTTAATCAAGGGACTCAGTGCTGACCCCAACTTCTTTGGAGATGCCAAGATGCATTTGCTTGAGATGATGGACAAGGGGAAACGGCCCAATGCTGATACCTTCACTGCGGTGATAGAGGGCTTTGCAAAGCAGGAGGACAAGGCAGCTGAGGAGGAGGGAAAAGAGTTTGTGCAGGTAATGAGGGATAAGGGGTTTGTGCCTAATGCGAAGGCAATGATGGAGGTTTTAAAGGGTAGACCAACATCTGTAATTAGAAGTGCCATGAATATTGTCCTTTCCACCTTGAAGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

356

Amino Acids

39.48

Weight (kDa)

5.37

Isoelectric Point (pI)

42.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 197 - 305 8.5e-09 Fungal tetratrico peptide repeats
PPR_2 PF13041 221 - 263 2.4e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 937
AccB1I GGYRCC 1 cut(s) 116
AccI GTMKAC 2 cut(s) 318, 1009
AccII CGCG 1 cut(s) 528
AciI CCGC 3 cut(s) 5, 666, 881
AcoI YGGCCR 2 cut(s) 538, 726
AcuI CTGAAG 1 cut(s) 476
AfaI GTAC 2 cut(s) 512, 569
AfiI CCNNNNNNNGG 1 cut(s) 126
AflIII ACRYGT 1 cut(s) 519
AgsI TTSAA 4 cut(s) 103, 169, 677, 1060
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 2 cut(s) 535, 723
AleI CACNNNNGTG 2 cut(s) 266, 881
AluBI AGCT 3 cut(s) 132, 737, 920
AluI AGCT 3 cut(s) 132, 737, 920
Alw21I GWGCWC 2 cut(s) 310, 712
Alw26I GTCTC 4 cut(s) 229, 249, 479, 626
AlwNI CAGNNNCTG 2 cut(s) 254, 454
AoxI GGCC 6 cut(s) 297, 354, 538, 603, 726, 857
ApeKI GCWGC 2 cut(s) 737, 917
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 2 cut(s) 528, 530
AspS9I GGNCC 2 cut(s) 652, 858
AsuHPI GGTGA 2 cut(s) 253, 895
AvaII GGWCC 1 cut(s) 652
BalI TGGCCA 2 cut(s) 540, 728
BanI GGYRCC 1 cut(s) 116
BanII GRGCYC 1 cut(s) 648
BbsI GAAGAC 1 cut(s) 250
Bbv12I GWGCWC 2 cut(s) 310, 712
BbvCI CCTCAGC 1 cut(s) 921
BbvI GCAGC 2 cut(s) 724, 929
BccI CCATC 3 cut(s) 581, 835, 985
BceAI ACGGC 1 cut(s) 872
BciT130I CCWGG 2 cut(s) 537, 725
BcoDI GTCTC 4 cut(s) 229, 249, 479, 626
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 1 cut(s) 12
BfuAI ACCTGC 1 cut(s) 937
BisI GCNGC 2 cut(s) 738, 918
BlsI GCNGC 2 cut(s) 739, 919
BmcAI AGTACT 1 cut(s) 512
Bme1390I CCNGG 2 cut(s) 537, 725
Bme18I GGWCC 1 cut(s) 652
BmgT120I GGNCC 2 cut(s) 652, 858
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 2 cut(s) 537, 725
BmrI ACTGGG 1 cut(s) 563
BmsI GCATC 3 cut(s) 198, 805, 813
BmuI ACTGGG 1 cut(s) 563
BpiI GAAGAC 1 cut(s) 250
BpmI CTGGAG 2 cut(s) 231, 734
Bpu10I CCTNAGC 1 cut(s) 921
BpuEI CTTGAG 4 cut(s) 26, 296, 389, 854
BsaAI YACGTR 1 cut(s) 520
BsaI GGTCTC 1 cut(s) 479
BsaJI CCNNGG 6 cut(s) 357, 384, 535, 606, 648, 702
Bsc4I CCNNNNNNNGG 1 cut(s) 126
Bse118I RCCGGY 2 cut(s) 185, 284
Bse1I ACTGG 3 cut(s) 248, 344, 558
Bse3DI GCAATG 1 cut(s) 993
BseBI CCWGG 2 cut(s) 537, 725
BseDI CCNNGG 6 cut(s) 357, 384, 535, 606, 648, 702
BseGI GGATG 1 cut(s) 505
BseLI CCNNNNNNNGG 1 cut(s) 126
BseMI GCAATG 1 cut(s) 993
BseMII CTCAG 3 cut(s) 330, 802, 912
BseNI ACTGG 3 cut(s) 248, 344, 558
BsePI GCGCGC 1 cut(s) 526
BseRI GAGGAG 4 cut(s) 142, 644, 938, 941
BseXI GCAGC 2 cut(s) 724, 929
BseYI CCCAGC 1 cut(s) 740
BsgI GTGCAG 1 cut(s) 965
Bsh1236I CGCG 1 cut(s) 528
BshFI GGCC 6 cut(s) 299, 356, 540, 605, 728, 859
BshNI GGYRCC 1 cut(s) 116
BsiHKAI GWGCWC 2 cut(s) 310, 712
BsiSI CCGG 2 cut(s) 186, 285
BslFI GGGAC 1 cut(s) 798
BslI CCNNNNNNNGG 1 cut(s) 126
BsmAI GTCTC 4 cut(s) 229, 249, 479, 626
BsmBI CGTCTC 1 cut(s) 626
BsmFI GGGAC 1 cut(s) 798
BsmI GAATGC 2 cut(s) 237, 450
BsnI GGCC 6 cut(s) 299, 356, 540, 605, 728, 859
Bso31I GGTCTC 1 cut(s) 479
Bsp1286I GDGCHC 3 cut(s) 310, 648, 712
Bsp1407I TGTACA 1 cut(s) 567
Bsp143I GATC 1 cut(s) 469
Bsp19I CCATGG 1 cut(s) 648
BspACI CCGC 3 cut(s) 5, 666, 881
BspANI GGCC 6 cut(s) 299, 356, 540, 605, 728, 859
BspCNI CTCAG 3 cut(s) 331, 801, 913
BspFNI CGCG 1 cut(s) 528
BspLI GGNNCC 1 cut(s) 118
BspMI ACCTGC 1 cut(s) 937
BspT107I GGYRCC 1 cut(s) 116
BspTNI GGTCTC 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 993
BsrFI RCCGGY 2 cut(s) 185, 284
BsrGI TGTACA 1 cut(s) 567
BsrI ACTGG 3 cut(s) 248, 344, 558
BssAI RCCGGY 2 cut(s) 185, 284
BssECI CCNNGG 6 cut(s) 357, 384, 535, 606, 648, 702
BssHII GCGCGC 1 cut(s) 526
BssMI GATC 1 cut(s) 469
BssT1I CCWWGG 4 cut(s) 357, 384, 648, 702
Bst2UI CCWGG 2 cut(s) 537, 725
Bst4CI ACNGT 2 cut(s) 86, 407
BstAUI TGTACA 1 cut(s) 567
BstBAI YACGTR 1 cut(s) 520
BstC8I GCNNGC 2 cut(s) 528, 532
BstDEI CTNAG 3 cut(s) 339, 788, 921
BstDSI CCRYGG 1 cut(s) 648
BstF5I GGATG 1 cut(s) 505
BstFNI CGCG 1 cut(s) 528
BstHHI GCGC 2 cut(s) 528, 530
BstKTI GATC 1 cut(s) 472
BstMAI GTCTC 4 cut(s) 229, 249, 479, 626
BstMBI GATC 1 cut(s) 469
BstMWI GCNNNNNNNGC 6 cut(s) 305, 434, 716, 725, 734, 746
BstNI CCWGG 2 cut(s) 537, 725
BstSCI CCNGG 2 cut(s) 535, 723
BstUI CGCG 1 cut(s) 528
BstV1I GCAGC 2 cut(s) 724, 929
BstV2I GAAGAC 1 cut(s) 250
BsuRI GGCC 6 cut(s) 299, 356, 540, 605, 728, 859
BtgI CCRYGG 1 cut(s) 648
BtsCI GGATG 1 cut(s) 505
BtsI GCAGTG 2 cut(s) 570, 876
BtsIMutI CAGTG 8 cut(s) 255, 336, 351, 412, 452, 570, 796, 876
BveI ACCTGC 1 cut(s) 937
Cac8I GCNNGC 2 cut(s) 528, 532
CaiI CAGNNNCTG 2 cut(s) 254, 454
CfoI GCGC 2 cut(s) 528, 530
Cfr10I RCCGGY 2 cut(s) 185, 284
Cfr13I GGNCC 2 cut(s) 652, 858
Csp6I GTAC 2 cut(s) 511, 568
CviAII CATG 5 cut(s) 328, 394, 649, 730, 1036
CviQI GTAC 2 cut(s) 511, 568
DdeI CTNAG 3 cut(s) 339, 788, 921
DpnI GATC 1 cut(s) 471
DpnII GATC 1 cut(s) 469
DraI TTTAAA 1 cut(s) 1002
EaeI YGGCCR 2 cut(s) 538, 726
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 4 cut(s) 357, 384, 648, 702
Eco147I AGGCCT 1 cut(s) 605
Eco24I GRGCYC 1 cut(s) 648
Eco31I GGTCTC 1 cut(s) 479
Eco47I GGWCC 1 cut(s) 652
Eco57I CTGAAG 1 cut(s) 476
EcoRII CCWGG 2 cut(s) 535, 723
EcoT14I CCWWGG 4 cut(s) 357, 384, 648, 702
EcoT22I ATGCAT 1 cut(s) 828
EcoT38I GRGCYC 1 cut(s) 648
ErhI CCWWGG 4 cut(s) 357, 384, 648, 702
Esp3I CGTCTC 1 cut(s) 626
FaeI CATG 5 cut(s) 331, 397, 652, 733, 1039
FaqI GGGAC 1 cut(s) 798
FatI CATG 5 cut(s) 327, 393, 648, 729, 1035
FblI GTMKAC 2 cut(s) 318, 1009
Fnu4HI GCNGC 2 cut(s) 738, 918
FokI GGATG 1 cut(s) 512
FriOI GRGCYC 1 cut(s) 648
Fsp4HI GCNGC 2 cut(s) 738, 918
FspBI CTAG 1 cut(s) 12
GlaI GCGC 2 cut(s) 527, 529
GluI GCNGC 2 cut(s) 738, 918
GsaI CCCAGC 1 cut(s) 744
GsuI CTGGAG 2 cut(s) 231, 734
HaeIII GGCC 6 cut(s) 299, 356, 540, 605, 728, 859
HapII CCGG 2 cut(s) 186, 285
HhaI GCGC 2 cut(s) 528, 530
Hin1II CATG 5 cut(s) 331, 397, 652, 733, 1039
Hin6I GCGC 2 cut(s) 526, 528
HinP1I GCGC 2 cut(s) 526, 528
HinfI GANTC 2 cut(s) 137, 786
HpaII CCGG 2 cut(s) 186, 285
HphI GGTGA 2 cut(s) 253, 895
Hpy166II GTNNAC 4 cut(s) 319, 478, 570, 1010
Hpy188I TCNGA 3 cut(s) 229, 403, 610
Hpy188III TCNNGA 2 cut(s) 43, 713
Hpy8I GTNNAC 4 cut(s) 319, 478, 570, 1010
HpyAV CCTTC 5 cut(s) 346, 408, 434, 883, 976
HpyCH4III ACNGT 2 cut(s) 86, 407
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 4 cut(s) 448, 826, 899, 946
HpyF10VI GCNNNNNNNGC 6 cut(s) 305, 434, 716, 725, 734, 746
HpyF3I CTNAG 3 cut(s) 339, 788, 921
HpySE526I ACGT 1 cut(s) 519
Hsp92II CATG 5 cut(s) 331, 397, 652, 733, 1039
HspAI GCGC 2 cut(s) 526, 528
Kzo9I GATC 1 cut(s) 469
LmnI GCTCC 2 cut(s) 129, 558
Lsp1109I GCAGC 2 cut(s) 724, 929
LweI GCATC 3 cut(s) 198, 805, 813
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 519
MalI GATC 1 cut(s) 471
MboI GATC 1 cut(s) 469
MboII GAAGA 3 cut(s) 70, 250, 469
MhlI GDGCHC 3 cut(s) 310, 648, 712
MlsI TGGCCA 2 cut(s) 540, 728
MluCI AATT 4 cut(s) 22, 169, 624, 1023
MluNI TGGCCA 2 cut(s) 540, 728
MlyI GAGTC 1 cut(s) 780
MmeI TCCRAC 1 cut(s) 426
Mox20I TGGCCA 2 cut(s) 540, 728
Mph1103I ATGCAT 1 cut(s) 828
MroXI GAANNNNTTC 1 cut(s) 62
MscI TGGCCA 2 cut(s) 540, 728
MseI TTAA 6 cut(s) 144, 159, 216, 618, 776, 1001
MslI CAYNNNNRTG 2 cut(s) 266, 881
Msp20I TGGCCA 2 cut(s) 540, 728
MspA1I CMGCKG 2 cut(s) 668, 920
MspI CCGG 2 cut(s) 186, 285
MspR9I CCNGG 2 cut(s) 537, 725
Mva1269I GAATGC 2 cut(s) 237, 450
MvaI CCWGG 2 cut(s) 537, 725
MvnI CGCG 1 cut(s) 528
MwoI GCNNNNNNNGC 6 cut(s) 305, 434, 716, 725, 734, 746
NcoI CCATGG 1 cut(s) 648
NdeII GATC 1 cut(s) 469
NlaIII CATG 5 cut(s) 331, 397, 652, 733, 1039
NlaIV GGNNCC 1 cut(s) 118
NsiI ATGCAT 1 cut(s) 828
OliI CACNNNNGTG 2 cut(s) 266, 881
PauI GCGCGC 1 cut(s) 526
PceI AGGCCT 1 cut(s) 605
PctI GAATGC 2 cut(s) 237, 450
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 137
PkrI GCNGC 2 cut(s) 739, 919
PleI GAGTC 1 cut(s) 780
PpsI GAGTC 1 cut(s) 780
Ppu21I YACGTR 1 cut(s) 520
Psp6I CCWGG 2 cut(s) 535, 723
PspFI CCCAGC 1 cut(s) 740
PspGI CCWGG 2 cut(s) 535, 723
PspN4I GGNNCC 1 cut(s) 118
PspPI GGNCC 2 cut(s) 652, 858
PstNI CAGNNNCTG 2 cut(s) 254, 454
PteI GCGCGC 1 cut(s) 526
PvuII CAGCTG 1 cut(s) 920
RsaI GTAC 2 cut(s) 512, 569
RsaNI GTAC 2 cut(s) 511, 568
RseI CAYNNNNRTG 2 cut(s) 266, 881
SaqAI TTAA 6 cut(s) 144, 159, 216, 618, 776, 1001
SatI GCNGC 2 cut(s) 738, 918
Sau3AI GATC 1 cut(s) 469
Sau96I GGNCC 2 cut(s) 652, 858
ScaI AGTACT 1 cut(s) 512
SchI GAGTC 1 cut(s) 780
ScrFI CCNGG 2 cut(s) 537, 725
SduI GDGCHC 3 cut(s) 310, 648, 712
SfaNI GCATC 3 cut(s) 198, 805, 813
SinI GGWCC 1 cut(s) 652
SmiMI CAYNNNNRTG 2 cut(s) 266, 881
SmlI CTYRAG 4 cut(s) 41, 311, 368, 833
SmoI CTYRAG 4 cut(s) 41, 311, 368, 833
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 4 cut(s) 22, 169, 624, 1023
SseBI AGGCCT 1 cut(s) 605
SsiI CCGC 3 cut(s) 5, 666, 881
SspI AATATT 1 cut(s) 1042
SspMI CTAG 1 cut(s) 12
StuI AGGCCT 1 cut(s) 605
StyD4I CCNGG 2 cut(s) 535, 723
StyI CCWWGG 4 cut(s) 357, 384, 648, 702
TaaI ACNGT 2 cut(s) 86, 407
TaiI ACGT 1 cut(s) 522
TaqI TCGA 2 cut(s) 66, 155
TaqII GACCGA 1 cut(s) 213
TasI AATT 4 cut(s) 22, 169, 624, 1023
TatI WGTACW 2 cut(s) 510, 567
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 6 cut(s) 144, 159, 216, 618, 776, 1001
Tru9I TTAA 6 cut(s) 144, 159, 216, 618, 776, 1001
TscAI CASTG 8 cut(s) 255, 343, 351, 412, 459, 577, 796, 883
TseI GCWGC 2 cut(s) 737, 917
TspDTI ATGAA 3 cut(s) 71, 382, 1052
TspRI CASTG 8 cut(s) 255, 343, 351, 412, 459, 577, 796, 883
VpaK11BI GGWCC 1 cut(s) 652
XcmI CCANNNNNNNNNTGG 2 cut(s) 343, 709
XmiI GTMKAC 2 cut(s) 318, 1009
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 1 cut(s) 12
ZrmI AGTACT 1 cut(s) 512
Zsp2I ATGCAT 1 cut(s) 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.