Pentatricopeptide repeat-containing protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 86 - 133 | 7e-09 | PPR repeat family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 266 |
| AciI | CCGC | 2 cut(s) | 520, 700 |
| AcsI | RAATTY | 2 cut(s) | 125, 829 |
| AfaI | GTAC | 1 cut(s) | 252 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 625 |
| AflIII | ACRYGT | 1 cut(s) | 64 |
| AgsI | TTSAA | 5 cut(s) | 173, 475, 601, 829, 882 |
| AjiI | CACGTC | 1 cut(s) | 262 |
| AjnI | CCWGG | 2 cut(s) | 243, 542 |
| AleI | CACNNNNGTG | 1 cut(s) | 14 |
| AluBI | AGCT | 2 cut(s) | 694, 796 |
| AluI | AGCT | 2 cut(s) | 694, 796 |
| Alw21I | GWGCWC | 1 cut(s) | 713 |
| Alw26I | GTCTC | 1 cut(s) | 361 |
| Alw44I | GTGCAC | 1 cut(s) | 709 |
| AoxI | GGCC | 4 cut(s) | 87, 393, 430, 540 |
| ApaLI | GTGCAC | 1 cut(s) | 709 |
| ApeKI | GCWGC | 1 cut(s) | 317 |
| ApoI | RAATTY | 2 cut(s) | 125, 829 |
| AseI | ATTAAT | 1 cut(s) | 821 |
| AspLEI | GCGC | 1 cut(s) | 339 |
| AspS9I | GGNCC | 3 cut(s) | 328, 394, 588 |
| AsuHPI | GGTGA | 2 cut(s) | 28, 265 |
| AvaII | GGWCC | 2 cut(s) | 328, 588 |
| BaeGI | GKGCMC | 1 cut(s) | 713 |
| BanII | GRGCYC | 1 cut(s) | 579 |
| BbsI | GAAGAC | 1 cut(s) | 641 |
| Bbv12I | GWGCWC | 1 cut(s) | 713 |
| BbvI | GCAGC | 1 cut(s) | 304 |
| BccI | CCATC | 2 cut(s) | 764, 895 |
| BciT130I | CCWGG | 2 cut(s) | 245, 544 |
| BcoDI | GTCTC | 1 cut(s) | 361 |
| BglII | AGATCT | 1 cut(s) | 747 |
| BisI | GCNGC | 1 cut(s) | 318 |
| BlpI | GCTNAGC | 1 cut(s) | 578 |
| BlsI | GCNGC | 1 cut(s) | 319 |
| Bme1390I | CCNGG | 2 cut(s) | 245, 544 |
| Bme18I | GGWCC | 2 cut(s) | 328, 588 |
| BmgBI | CACGTC | 1 cut(s) | 262 |
| BmgT120I | GGNCC | 3 cut(s) | 328, 394, 588 |
| BmiI | GGNNCC | 1 cut(s) | 589 |
| BmrFI | CCNGG | 2 cut(s) | 245, 544 |
| BmsI | GCATC | 1 cut(s) | 499 |
| BpiI | GAAGAC | 1 cut(s) | 641 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 578 |
| BpuEI | CTTGAG | 2 cut(s) | 41, 308 |
| BsaJI | CCNNGG | 4 cut(s) | 12, 244, 543, 583 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 678, 708 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 625 |
| Bse1I | ACTGG | 2 cut(s) | 355, 714 |
| Bse3DI | GCAATG | 1 cut(s) | 781 |
| BseBI | CCWGG | 2 cut(s) | 245, 544 |
| BseDI | CCNNGG | 4 cut(s) | 12, 244, 543, 583 |
| BseGI | GGATG | 1 cut(s) | 775 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 625 |
| BseMI | GCAATG | 1 cut(s) | 781 |
| BseMII | CTCAG | 2 cut(s) | 93, 592 |
| BseNI | ACTGG | 2 cut(s) | 355, 714 |
| BseRI | GAGGAG | 3 cut(s) | 98, 194, 686 |
| BseSI | GKGCMC | 1 cut(s) | 713 |
| BseXI | GCAGC | 1 cut(s) | 304 |
| BseYI | CCCAGC | 1 cut(s) | 522 |
| BshFI | GGCC | 4 cut(s) | 89, 395, 432, 542 |
| BsiHKAI | GWGCWC | 1 cut(s) | 713 |
| BslFI | GGGAC | 1 cut(s) | 20 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 625 |
| BsmAI | GTCTC | 1 cut(s) | 361 |
| BsmFI | GGGAC | 1 cut(s) | 20 |
| BsnI | GGCC | 4 cut(s) | 89, 395, 432, 542 |
| Bsp1286I | GDGCHC | 2 cut(s) | 579, 713 |
| Bsp143I | GATC | 2 cut(s) | 309, 747 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 578 |
| BspACI | CCGC | 2 cut(s) | 520, 700 |
| BspANI | GGCC | 4 cut(s) | 89, 395, 432, 542 |
| BspCNI | CTCAG | 2 cut(s) | 94, 591 |
| BspLI | GGNNCC | 1 cut(s) | 589 |
| BsrDI | GCAATG | 1 cut(s) | 781 |
| BsrI | ACTGG | 2 cut(s) | 355, 714 |
| BssECI | CCNNGG | 4 cut(s) | 12, 244, 543, 583 |
| BssMI | GATC | 2 cut(s) | 309, 747 |
| BssT1I | CCWWGG | 2 cut(s) | 12, 583 |
| Bst2UI | CCWGG | 2 cut(s) | 245, 544 |
| Bst4CI | ACNGT | 2 cut(s) | 841, 848 |
| Bst6I | CTCTTC | 1 cut(s) | 415 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 708 |
| BstC8I | GCNNGC | 2 cut(s) | 31, 304 |
| BstDEI | CTNAG | 2 cut(s) | 102, 578 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 623 |
| BstF5I | GGATG | 1 cut(s) | 775 |
| BstHHI | GCGC | 1 cut(s) | 339 |
| BstKTI | GATC | 2 cut(s) | 312, 750 |
| BstMAI | GTCTC | 1 cut(s) | 361 |
| BstMBI | GATC | 2 cut(s) | 309, 747 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 708 |
| BstNI | CCWGG | 2 cut(s) | 245, 544 |
| BstNSI | RCATGY | 2 cut(s) | 68, 343 |
| BstSCI | CCNGG | 2 cut(s) | 243, 542 |
| BstSLI | GKGCMC | 1 cut(s) | 713 |
| BstV1I | GCAGC | 1 cut(s) | 304 |
| BstV2I | GAAGAC | 1 cut(s) | 641 |
| BstX2I | RGATCY | 1 cut(s) | 747 |
| BstYI | RGATCY | 1 cut(s) | 747 |
| BsuRI | GGCC | 4 cut(s) | 89, 395, 432, 542 |
| BtgZI | GCGATG | 1 cut(s) | 644 |
| BtrI | CACGTC | 1 cut(s) | 262 |
| BtsCI | GGATG | 1 cut(s) | 775 |
| BtsI | GCAGTG | 1 cut(s) | 24 |
| BtsIMutI | CAGTG | 3 cut(s) | 24, 348, 721 |
| Cac8I | GCNNGC | 2 cut(s) | 31, 304 |
| CfoI | GCGC | 1 cut(s) | 339 |
| Cfr13I | GGNCC | 3 cut(s) | 328, 394, 588 |
| Csp6I | GTAC | 1 cut(s) | 251 |
| CviAII | CATG | 7 cut(s) | 65, 133, 340, 391, 482, 722, 790 |
| CviQI | GTAC | 1 cut(s) | 251 |
| DdeI | CTNAG | 2 cut(s) | 102, 578 |
| DpnI | GATC | 2 cut(s) | 311, 749 |
| DpnII | GATC | 2 cut(s) | 309, 747 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 266 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 266 |
| Eam1104I | CTCTTC | 1 cut(s) | 415 |
| EarI | CTCTTC | 1 cut(s) | 415 |
| Eco130I | CCWWGG | 2 cut(s) | 12, 583 |
| Eco24I | GRGCYC | 1 cut(s) | 579 |
| Eco47I | GGWCC | 2 cut(s) | 328, 588 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 623 |
| EcoRII | CCWGG | 2 cut(s) | 243, 542 |
| EcoT14I | CCWWGG | 2 cut(s) | 12, 583 |
| EcoT38I | GRGCYC | 1 cut(s) | 579 |
| ErhI | CCWWGG | 2 cut(s) | 12, 583 |
| FaeI | CATG | 7 cut(s) | 68, 136, 343, 394, 485, 725, 793 |
| FaqI | GGGAC | 1 cut(s) | 20 |
| FatI | CATG | 7 cut(s) | 64, 132, 339, 390, 481, 721, 789 |
| FauI | CCCGC | 1 cut(s) | 527 |
| Fnu4HI | GCNGC | 1 cut(s) | 318 |
| FokI | GGATG | 1 cut(s) | 782 |
| FriOI | GRGCYC | 1 cut(s) | 579 |
| Fsp4HI | GCNGC | 1 cut(s) | 318 |
| GlaI | GCGC | 1 cut(s) | 338 |
| GluI | GCNGC | 1 cut(s) | 318 |
| GsaI | CCCAGC | 1 cut(s) | 526 |
| HaeIII | GGCC | 4 cut(s) | 89, 395, 432, 542 |
| HhaI | GCGC | 1 cut(s) | 339 |
| Hin1II | CATG | 7 cut(s) | 68, 136, 343, 394, 485, 725, 793 |
| Hin6I | GCGC | 1 cut(s) | 337 |
| HinP1I | GCGC | 1 cut(s) | 337 |
| HincII | GTYRAC | 1 cut(s) | 844 |
| HindII | GTYRAC | 1 cut(s) | 844 |
| HinfI | GANTC | 7 cut(s) | 98, 136, 182, 407, 527, 737, 878 |
| HphI | GGTGA | 2 cut(s) | 28, 265 |
| Hpy166II | GTNNAC | 6 cut(s) | 24, 331, 711, 719, 837, 844 |
| Hpy188I | TCNGA | 3 cut(s) | 103, 241, 415 |
| Hpy188III | TCNNGA | 2 cut(s) | 58, 730 |
| Hpy8I | GTNNAC | 6 cut(s) | 24, 331, 711, 719, 837, 844 |
| Hpy99I | CGWCG | 2 cut(s) | 200, 212 |
| HpyAV | CCTTC | 1 cut(s) | 532 |
| HpyCH4III | ACNGT | 2 cut(s) | 841, 848 |
| HpyCH4IV | ACGT | 1 cut(s) | 261 |
| HpyCH4V | TGCA | 2 cut(s) | 711, 779 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 708 |
| HpyF3I | CTNAG | 2 cut(s) | 102, 578 |
| HpySE526I | ACGT | 1 cut(s) | 261 |
| Hsp92II | CATG | 7 cut(s) | 68, 136, 343, 394, 485, 725, 793 |
| HspAI | GCGC | 1 cut(s) | 337 |
| Kzo9I | GATC | 2 cut(s) | 309, 747 |
| LmnI | GCTCC | 2 cut(s) | 699, 793 |
| Lsp1109I | GCAGC | 1 cut(s) | 304 |
| LweI | GCATC | 1 cut(s) | 499 |
| MaeII | ACGT | 1 cut(s) | 261 |
| MaeIII | GTNAC | 1 cut(s) | 400 |
| MalI | GATC | 2 cut(s) | 311, 749 |
| MboI | GATC | 2 cut(s) | 309, 747 |
| MboII | GAAGA | 3 cut(s) | 402, 646, 757 |
| MflI | RGATCY | 1 cut(s) | 747 |
| MhlI | GDGCHC | 2 cut(s) | 579, 713 |
| MluCI | AATT | 5 cut(s) | 37, 125, 421, 822, 829 |
| MlyI | GAGTC | 4 cut(s) | 92, 401, 536, 746 |
| MmeI | TCCRAC | 1 cut(s) | 441 |
| MseI | TTAA | 3 cut(s) | 156, 228, 821 |
| MslI | CAYNNNNRTG | 1 cut(s) | 14 |
| MspA1I | CMGCKG | 1 cut(s) | 522 |
| MspR9I | CCNGG | 2 cut(s) | 245, 544 |
| MvaI | CCWGG | 2 cut(s) | 245, 544 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 708 |
| NdeII | GATC | 2 cut(s) | 309, 747 |
| NlaIII | CATG | 7 cut(s) | 68, 136, 343, 394, 485, 725, 793 |
| NlaIV | GGNNCC | 1 cut(s) | 589 |
| NspI | RCATGY | 2 cut(s) | 68, 343 |
| OliI | CACNNNNGTG | 1 cut(s) | 14 |
| PciI | ACATGT | 1 cut(s) | 64 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 204 |
| PfeI | GAWTC | 3 cut(s) | 136, 182, 878 |
| PflFI | GACNNNGTC | 1 cut(s) | 785 |
| PkrI | GCNGC | 1 cut(s) | 319 |
| PleI | GAGTC | 4 cut(s) | 92, 401, 535, 745 |
| PpsI | GAGTC | 4 cut(s) | 92, 401, 535, 745 |
| PscI | ACATGT | 1 cut(s) | 64 |
| PshBI | ATTAAT | 1 cut(s) | 821 |
| Psp6I | CCWGG | 2 cut(s) | 243, 542 |
| PspFI | CCCAGC | 1 cut(s) | 522 |
| PspGI | CCWGG | 2 cut(s) | 243, 542 |
| PspN4I | GGNNCC | 1 cut(s) | 589 |
| PspPI | GGNCC | 3 cut(s) | 328, 394, 588 |
| PsuI | RGATCY | 1 cut(s) | 747 |
| PsyI | GACNNNGTC | 1 cut(s) | 785 |
| RsaI | GTAC | 1 cut(s) | 252 |
| RsaNI | GTAC | 1 cut(s) | 251 |
| RseI | CAYNNNNRTG | 1 cut(s) | 14 |
| SaqAI | TTAA | 3 cut(s) | 156, 228, 821 |
| SatI | GCNGC | 1 cut(s) | 318 |
| Sau3AI | GATC | 2 cut(s) | 309, 747 |
| Sau96I | GGNCC | 3 cut(s) | 328, 394, 588 |
| SchI | GAGTC | 4 cut(s) | 92, 401, 536, 746 |
| ScrFI | CCNGG | 2 cut(s) | 245, 544 |
| SduI | GDGCHC | 2 cut(s) | 579, 713 |
| SfaNI | GCATC | 1 cut(s) | 499 |
| SinI | GGWCC | 2 cut(s) | 328, 588 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 14 |
| SmlI | CTYRAG | 2 cut(s) | 56, 323 |
| SmoI | CTYRAG | 2 cut(s) | 56, 323 |
| Sse9I | AATT | 5 cut(s) | 37, 125, 421, 822, 829 |
| SsiI | CCGC | 2 cut(s) | 520, 700 |
| SspI | AATATT | 1 cut(s) | 177 |
| StyD4I | CCNGG | 2 cut(s) | 243, 542 |
| StyI | CCWWGG | 2 cut(s) | 12, 583 |
| TaaI | ACNGT | 2 cut(s) | 841, 848 |
| TaiI | ACGT | 1 cut(s) | 264 |
| TaqI | TCGA | 2 cut(s) | 180, 207 |
| TasI | AATT | 5 cut(s) | 37, 125, 421, 822, 829 |
| TfiI | GAWTC | 3 cut(s) | 136, 182, 878 |
| Tru1I | TTAA | 3 cut(s) | 156, 228, 821 |
| Tru9I | TTAA | 3 cut(s) | 156, 228, 821 |
| TscAI | CASTG | 3 cut(s) | 31, 355, 721 |
| TseI | GCWGC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 4 cut(s) | 541, 647, 656, 758 |
| TspRI | CASTG | 3 cut(s) | 31, 355, 721 |
| Tth111I | GACNNNGTC | 1 cut(s) | 785 |
| VneI | GTGCAC | 1 cut(s) | 709 |
| VpaK11BI | GGWCC | 2 cut(s) | 328, 588 |
| VspI | ATTAAT | 1 cut(s) | 821 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 623 |
| XapI | RAATTY | 2 cut(s) | 125, 829 |
| XceI | RCATGY | 2 cut(s) | 68, 343 |