FvH4_5g35000

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000101
Physical Location & Seq
Forward (+)
25587312 .. 25589171
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g35000.t2

Sequence Viewer

Length: 1185 bp
ATGGCGGAAACTAGTTTCCCCAATTCTTCTGCTGAAGACCTCAAGAGACATGTAATGGAGATTTTCCAGGATGCTACCAACGACTGTGAGGACGAGGAATTGAAAGTTCAAATGTTCGATGCAGATATGGGCGAAACTGACAAAGCTAGAGAGATGTTTAAGCCTCTCTCTCACTTGGGCATTCTGTCTCATGTAGCTGTCTTTACCATTGTCATTTCGCTCTACTCCGGTTCACGCAAGGCCGAGAGTGCTCTCAAGGTCTACCACCAGATGATAGCCACTGGTGTCAACCCTGTCTCCTTCACTTACACTCAACTCATCTGTGTACTTGCGACAGACTTTTCCAAACTTAAGTACCTTAGGTTGGCCAAGAAGTACTTTCTTGAAACCTTGGATAAGGGGATGAAGCTCGATCGTACACCCTTTTGGAATCTTATGAAAGCCATTGCCTACCGAGAGCCACTAGAGAAGTTCAAGGAGTTCCTGCAGCAGATAAAAGCCAAGGGTCTAGTGCTTCATGACTACGGTTTTAACTACAGAGAAGCCTACCTCGCTGAAGCAAGGGAAGTACTGAAAATGTTTGCTCATCTTGTCCACAATGACACCATTGACAAAGATGTTAGAAGTTACTTCTTCTGGAAGACCACCTCTGCTGAACACTTCCAGAAACTTGGGTGCAAGATGTACAGTGCTTTGATAGATGATGGAAATGTAGATGAGGCAAAAGAGTTCCATGATGAAGTTGAGGAGACGGGTATACAGCCATTGGTCTTAATCCACACCTCCATTATTGAAGCCTACCTCGAGTTTGGCAAGACCAAAGGTGCTCTGGAGGCATACCTTGCCATGCTAGCTGCTGGGGTTGCCCCCAACTCCTACACTTACACAGTTTTAATCAAGGGACTTGCTGCTGATCCCAATTTCTTTGGAGATGCCAAGAAGTATTTGCTCGAGATGATGGACAAGGGGAAGCGGCCCAATGTTGCTACCTTCACTGCGGTGATAGAGGGCTTTGCAAAGCAGGAGGACGAGGCAGCTCAAGAGGAGGGAAAACAGTTTGTGCAGGTCATGATTGATAAGGGTTTTGTGCCTAATGCAAAGGCTATGATGAACGTTTTAAAGGGTCGACAAACACGTGTAATTAGAAGCATCTTGAGTATTGTCCTTTCCACCTTGAAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

395

Amino Acids

44.72

Weight (kDa)

6.0

Isoelectric Point (pI)

21.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 59 - 105 2.3e-07 PPR repeat family
PPR_3 PF13812 240 - 294 8e-06 Pentatricopeptide repeat domain
TPR_24 PF23276 246 - 337 1.5e-08 Fungal tetratrico peptide repeats
PPR_2 PF13041 255 - 297 6.1e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1054
AccI GTMKAC 3 cut(s) 261, 757, 1126
AciI CCGC 3 cut(s) 5, 973, 998
AclI AACGTT 1 cut(s) 1113
AclWI GGATC 1 cut(s) 908
AcoI YGGCCR 1 cut(s) 366
AcuI CTGAAG 2 cut(s) 54, 576
AcvI CACGTG 1 cut(s) 1136
AfaI GTAC 6 cut(s) 327, 356, 377, 418, 570, 686
AfiI CCNNNNNNNGG 1 cut(s) 364
AflII CTTAAG 1 cut(s) 350
AflIII ACRYGT 3 cut(s) 49, 1133, 1135
AgsI TTSAA 6 cut(s) 103, 110, 386, 475, 794, 1177
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 1 cut(s) 66
AleI CACNNNNGTG 1 cut(s) 998
AluBI AGCT 5 cut(s) 146, 197, 409, 854, 1037
AluI AGCT 5 cut(s) 146, 197, 409, 854, 1037
Alw21I GWGCWC 2 cut(s) 253, 829
Alw26I GTCTC 4 cut(s) 40, 192, 301, 743
AlwI GGATC 1 cut(s) 908
Ama87I CYCGRG 2 cut(s) 803, 950
AoxI GGCC 3 cut(s) 240, 366, 974
ApeKI GCWGC 4 cut(s) 487, 854, 908, 1034
AspS9I GGNCC 1 cut(s) 975
AsuHPI GGTGA 1 cut(s) 1012
AsuNHI GCTAGC 1 cut(s) 850
AvaI CYCGRG 2 cut(s) 803, 950
AxyI CCTNAGG 1 cut(s) 359
BaeI ACNNNNGTAYC 2 cut(s) 338, 371
BalI TGGCCA 1 cut(s) 368
BbrPI CACGTG 1 cut(s) 1136
BbsI GAAGAC 2 cut(s) 42, 647
Bbv12I GWGCWC 2 cut(s) 253, 829
BbvI GCAGC 4 cut(s) 499, 841, 895, 1046
BccI CCATC 2 cut(s) 698, 952
BciT130I CCWGG 1 cut(s) 68
BcoDI GTCTC 4 cut(s) 40, 192, 301, 743
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 5 cut(s) 12, 147, 464, 509, 851
BfmI CTRYAG 2 cut(s) 485, 535
BfrI CTTAAG 1 cut(s) 350
BfuAI ACCTGC 1 cut(s) 1054
BisI GCNGC 5 cut(s) 488, 855, 909, 974, 1035
BlsI GCNGC 5 cut(s) 489, 856, 910, 975, 1036
BmcAI AGTACT 2 cut(s) 377, 570
Bme1390I CCNGG 1 cut(s) 68
BmeT110I CYCGRG 2 cut(s) 803, 950
BmgT120I GGNCC 1 cut(s) 975
BmrFI CCNGG 1 cut(s) 68
BmsI GCATC 4 cut(s) 61, 109, 922, 1158
BmtI GCTAGC 1 cut(s) 854
BpiI GAAGAC 2 cut(s) 42, 647
BpmI CTGGAG 1 cut(s) 851
BpuEI CTTGAG 4 cut(s) 26, 239, 1023, 1174
BsaAI YACGTR 1 cut(s) 1136
BsaJI CCNNGG 2 cut(s) 390, 501
BsaWI WCCGGW 1 cut(s) 227
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 1 cut(s) 286
Bse21I CCTNAGG 1 cut(s) 359
Bse3DI GCAATG 1 cut(s) 444
BseBI CCWGG 1 cut(s) 68
BseDI CCNNGG 2 cut(s) 390, 501
BseGI GGATG 2 cut(s) 76, 408
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMI GCAATG 1 cut(s) 444
BseNI ACTGG 1 cut(s) 286
BseRI GAGGAG 2 cut(s) 761, 1058
BseXI GCAGC 4 cut(s) 499, 841, 895, 1046
BseYI CCCAGC 1 cut(s) 857
BsgI GTGCAG 1 cut(s) 1082
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 3 cut(s) 242, 368, 976
BsiEI CGRYCG 1 cut(s) 415
BsiHKAI GWGCWC 2 cut(s) 253, 829
BsiHKCI CYCGRG 2 cut(s) 803, 950
BsiSI CCGG 1 cut(s) 228
BslFI GGGAC 1 cut(s) 915
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 4 cut(s) 40, 192, 301, 743
BsmBI CGTCTC 1 cut(s) 743
BsmFI GGGAC 1 cut(s) 915
BsmI GAATGC 1 cut(s) 180
BsnI GGCC 3 cut(s) 242, 368, 976
BsoBI CYCGRG 2 cut(s) 803, 950
Bsp1286I GDGCHC 2 cut(s) 253, 829
Bsp1407I TGTACA 1 cut(s) 684
Bsp143I GATC 2 cut(s) 412, 913
BspACI CCGC 3 cut(s) 5, 973, 998
BspANI GGCC 3 cut(s) 242, 368, 976
BspHI TCATGA 2 cut(s) 517, 1068
BspMAI CTGCAG 1 cut(s) 489
BspMI ACCTGC 1 cut(s) 1054
BspOI GCTAGC 1 cut(s) 854
BspPI GGATC 1 cut(s) 908
BspTI CTTAAG 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 444
BsrGI TGTACA 1 cut(s) 684
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 2 cut(s) 390, 501
BssMI GATC 2 cut(s) 412, 913
BssNAI GTATAC 1 cut(s) 758
BssT1I CCWWGG 2 cut(s) 390, 501
Bst1107I GTATAC 1 cut(s) 758
Bst2UI CCWGG 1 cut(s) 68
Bst4CI ACNGT 5 cut(s) 86, 527, 689, 889, 1056
BstAFI CTTAAG 1 cut(s) 350
BstAPI GCANNNNNTGC 1 cut(s) 842
BstAUI TGTACA 1 cut(s) 684
BstBAI YACGTR 1 cut(s) 1136
BstC8I GCNNGC 1 cut(s) 852
BstDEI CTNAG 1 cut(s) 359
BstF5I GGATG 2 cut(s) 76, 408
BstKTI GATC 2 cut(s) 415, 916
BstMAI GTCTC 4 cut(s) 40, 192, 301, 743
BstMBI GATC 2 cut(s) 412, 913
BstMCI CGRYCG 1 cut(s) 415
BstMWI GCNNNNNNNGC 6 cut(s) 248, 551, 833, 842, 851, 863
BstNI CCWGG 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 66
BstSFI CTRYAG 2 cut(s) 485, 535
BstV1I GCAGC 4 cut(s) 499, 841, 895, 1046
BstV2I GAAGAC 2 cut(s) 42, 647
BstXI CCANNNNNNTGG 1 cut(s) 671
BstZ17I GTATAC 1 cut(s) 758
Bsu36I CCTNAGG 1 cut(s) 359
BsuRI GGCC 3 cut(s) 242, 368, 976
BtsCI GGATG 2 cut(s) 76, 408
BtsI GCAGTG 1 cut(s) 993
BtsIMutI CAGTG 3 cut(s) 279, 694, 993
BveI ACCTGC 1 cut(s) 1054
Cac8I GCNNGC 1 cut(s) 852
CciI TCATGA 2 cut(s) 517, 1068
Cfr13I GGNCC 1 cut(s) 975
Csp6I GTAC 6 cut(s) 326, 355, 376, 417, 569, 685
CviAII CATG 6 cut(s) 50, 191, 518, 734, 847, 1069
CviQI GTAC 6 cut(s) 326, 355, 376, 417, 569, 685
DdeI CTNAG 1 cut(s) 359
DpnI GATC 2 cut(s) 414, 915
DpnII GATC 2 cut(s) 412, 913
DraI TTTAAA 1 cut(s) 1119
EaeI YGGCCR 1 cut(s) 366
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 390, 501
Eco57I CTGAAG 2 cut(s) 54, 576
Eco72I CACGTG 1 cut(s) 1136
Eco81I CCTNAGG 1 cut(s) 359
Eco88I CYCGRG 2 cut(s) 803, 950
EcoRII CCWGG 1 cut(s) 66
EcoT14I CCWWGG 2 cut(s) 390, 501
ErhI CCWWGG 2 cut(s) 390, 501
Esp3I CGTCTC 1 cut(s) 743
FaeI CATG 6 cut(s) 53, 194, 521, 737, 850, 1072
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 1 cut(s) 915
FatI CATG 6 cut(s) 49, 190, 517, 733, 846, 1068
FblI GTMKAC 3 cut(s) 261, 757, 1126
Fnu4HI GCNGC 5 cut(s) 488, 855, 909, 974, 1035
FokI GGATG 2 cut(s) 83, 415
Fsp4HI GCNGC 5 cut(s) 488, 855, 909, 974, 1035
FspBI CTAG 5 cut(s) 12, 147, 464, 509, 851
GluI GCNGC 5 cut(s) 488, 855, 909, 974, 1035
GsaI CCCAGC 1 cut(s) 861
GsuI CTGGAG 1 cut(s) 851
HaeIII GGCC 3 cut(s) 242, 368, 976
HapII CCGG 1 cut(s) 228
Hin1II CATG 6 cut(s) 53, 194, 521, 737, 850, 1072
HincII GTYRAC 2 cut(s) 289, 1127
HindII GTYRAC 2 cut(s) 289, 1127
HinfI GANTC 1 cut(s) 430
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 1012
Hpy166II GTNNAC 8 cut(s) 233, 262, 289, 326, 419, 595, 758, 1127
Hpy8I GTNNAC 8 cut(s) 233, 262, 289, 326, 419, 595, 758, 1127
HpyAV CCTTC 3 cut(s) 310, 1000, 1171
HpyCH4III ACNGT 5 cut(s) 86, 527, 689, 889, 1056
HpyCH4IV ACGT 2 cut(s) 1113, 1135
HpyCH4V TGCA 6 cut(s) 122, 487, 678, 1016, 1063, 1097
HpyF10VI GCNNNNNNNGC 6 cut(s) 248, 551, 833, 842, 851, 863
HpyF3I CTNAG 1 cut(s) 359
HpySE526I ACGT 2 cut(s) 1113, 1135
Hsp92II CATG 6 cut(s) 53, 194, 521, 737, 850, 1072
Kzo9I GATC 2 cut(s) 412, 913
Lsp1109I GCAGC 4 cut(s) 499, 841, 895, 1046
LweI GCATC 4 cut(s) 61, 109, 922, 1158
MaeI CTAG 5 cut(s) 12, 147, 464, 509, 851
MaeII ACGT 2 cut(s) 1113, 1135
MaeIII GTNAC 1 cut(s) 626
MalI GATC 2 cut(s) 414, 915
MboI GATC 2 cut(s) 412, 913
MboII GAAGA 4 cut(s) 18, 47, 625, 652
MhlI GDGCHC 2 cut(s) 253, 829
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 4 cut(s) 22, 98, 919, 1140
MluNI TGGCCA 1 cut(s) 368
Mox20I TGGCCA 1 cut(s) 368
MscI TGGCCA 1 cut(s) 368
MseI TTAA 6 cut(s) 159, 351, 531, 773, 893, 1118
MslI CAYNNNNRTG 1 cut(s) 998
Msp20I TGGCCA 1 cut(s) 368
MspCI CTTAAG 1 cut(s) 350
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 68
Mva1269I GAATGC 1 cut(s) 180
MvaI CCWGG 1 cut(s) 68
MwoI GCNNNNNNNGC 6 cut(s) 248, 551, 833, 842, 851, 863
NdeII GATC 2 cut(s) 412, 913
NheI GCTAGC 1 cut(s) 850
NlaIII CATG 6 cut(s) 53, 194, 521, 737, 850, 1072
NmeAIII GCCGAG 1 cut(s) 268
NspI RCATGY 1 cut(s) 53
OliI CACNNNNGTG 1 cut(s) 998
PaeR7I CTCGAG 2 cut(s) 803, 950
PagI TCATGA 2 cut(s) 517, 1068
PciI ACATGT 1 cut(s) 49
PcsI WCGNNNNNNNCGW 1 cut(s) 1132
PctI GAATGC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 430
PfoI TCCNGGA 1 cut(s) 66
PkrI GCNGC 5 cut(s) 489, 856, 910, 975, 1036
Ple19I CGATCG 1 cut(s) 415
PmaCI CACGTG 1 cut(s) 1136
PmlI CACGTG 1 cut(s) 1136
Ppu21I YACGTR 1 cut(s) 1136
PscI ACATGT 1 cut(s) 49
Psp1406I AACGTT 1 cut(s) 1113
Psp6I CCWGG 1 cut(s) 66
PspCI CACGTG 1 cut(s) 1136
PspFI CCCAGC 1 cut(s) 857
PspGI CCWGG 1 cut(s) 66
PspPI GGNCC 1 cut(s) 975
PspXI VCTCGAGB 1 cut(s) 803
PstI CTGCAG 1 cut(s) 489
PvuI CGATCG 1 cut(s) 415
RsaI GTAC 6 cut(s) 327, 356, 377, 418, 570, 686
RsaNI GTAC 6 cut(s) 326, 355, 376, 417, 569, 685
RseI CAYNNNNRTG 1 cut(s) 998
SalI GTCGAC 1 cut(s) 1125
SaqAI TTAA 6 cut(s) 159, 351, 531, 773, 893, 1118
SatI GCNGC 5 cut(s) 488, 855, 909, 974, 1035
Sau3AI GATC 2 cut(s) 412, 913
Sau96I GGNCC 1 cut(s) 975
ScaI AGTACT 2 cut(s) 377, 570
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 2 cut(s) 253, 829
SfaNI GCATC 4 cut(s) 61, 109, 922, 1158
SfcI CTRYAG 2 cut(s) 485, 535
Sfr274I CTCGAG 2 cut(s) 803, 950
SlaI CTCGAG 2 cut(s) 803, 950
SmiMI CAYNNNNRTG 1 cut(s) 998
SmlI CTYRAG 7 cut(s) 41, 254, 350, 803, 950, 1038, 1153
SmoI CTYRAG 7 cut(s) 41, 254, 350, 803, 950, 1038, 1153
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 4 cut(s) 22, 98, 919, 1140
SsiI CCGC 3 cut(s) 5, 973, 998
SspMI CTAG 5 cut(s) 12, 147, 464, 509, 851
StyD4I CCNGG 1 cut(s) 66
StyI CCWWGG 2 cut(s) 390, 501
TaaI ACNGT 5 cut(s) 86, 527, 689, 889, 1056
TaiI ACGT 2 cut(s) 1116, 1138
TaqI TCGA 5 cut(s) 117, 411, 804, 951, 1126
TasI AATT 4 cut(s) 22, 98, 919, 1140
TatI WGTACW 4 cut(s) 325, 375, 568, 684
TauI GCSGC 1 cut(s) 976
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 6 cut(s) 159, 351, 531, 773, 893, 1118
Tru9I TTAA 6 cut(s) 159, 351, 531, 773, 893, 1118
TscAI CASTG 3 cut(s) 286, 694, 1000
TseI GCWGC 4 cut(s) 487, 854, 908, 1034
TspDTI ATGAA 5 cut(s) 419, 452, 506, 753, 1124
TspRI CASTG 3 cut(s) 286, 694, 1000
Vha464I CTTAAG 1 cut(s) 350
XceI RCATGY 1 cut(s) 53
XcmI CCANNNNNNNNNTGG 1 cut(s) 826
XhoI CTCGAG 2 cut(s) 803, 950
XmiI GTMKAC 3 cut(s) 261, 757, 1126
XspI CTAG 5 cut(s) 12, 147, 464, 509, 851
ZrmI AGTACT 2 cut(s) 377, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.