Rw1G013630

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000101
Physical Location & Seq
Reverse (-)
30507956 .. 30508732
777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G013630.1

Sequence Viewer

Length: 777 bp
ATGGAGGCCATTGCCTACCAAGAGCCAGTAAAGAAGGCCAAGGAGTTCCTTGAGCAGATAAAAGCCAAGGGGTTTATGCCTTCCGACAGTGGTTTTCACTACAAAGAAGCCTACCTCGCCGAAGGAATACAAACACTGAAGATGTATACTAATCTTGTCCACAATGAGACCATTGACAAGGATGTTAGAAAGTTCTTCTACGTGTTGCACACCTGCCCTGGCCATACTAAAAAACTGGGGAGCATAATGTATAGTGCTTTGATAGATGATGGAAATATAGACGAGGCCACAGAGTTCTTTAACGAAGTTGAGGAGACGGGAATAGAGCCCATGGTCCTAATCCACACAGCTATTATTGAAGCCTATCTCTCGTTTACCAAGACCAATGGTGCTCTGGAGGCATACCTGGCCATGTTAGCTGCTGGGATTGCCCCTAACTCCTACACTTACACAGTTTTAATCAAGGGACTCAGTGCTGATCCCAACTTCTTAGGAGATGCCAAGAAGTATTTGCTCAAGATGATGGGCAAGGGGAAGCGGCCCAATGCTGCTATCTTCACTGCGGTGATAGAGGGCTTTGCAAAGCAGGAGGACAAGGCAGCTGAGGAGGAGAGAAAAGAGTTTGTGCAGGTAATGATGGATAAGGGCTTTGTGCTTAATGTGAAGGCAGTGATGGAGGTTTTAAGGGGTAAACCAACGTTGGTAATTAGAAGTGCCATGAGTATTGTCCTTTCCACCTTGAAGCAGTGCTGCTCTAGTTCATGGATGTTATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

258

Amino Acids

28.85

Weight (kDa)

6.25

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_24 PF23276 91 - 199 2.5e-08 Fungal tetratrico peptide repeats
PPR_2 PF13041 115 - 157 7.1e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 221
Acc36I ACCTGC 2 cut(s) 221, 619
AccI GTMKAC 1 cut(s) 146
AciI CCGC 2 cut(s) 538, 563
AclI AACGTT 1 cut(s) 698
AclWI GGATC 1 cut(s) 473
AcoI YGGCCR 2 cut(s) 220, 408
AcuI CTGAAG 1 cut(s) 158
AflIII ACRYGT 1 cut(s) 201
AgsI TTSAA 2 cut(s) 359, 742
AjnI CCWGG 2 cut(s) 217, 405
AleI CACNNNNGTG 1 cut(s) 563
AluBI AGCT 3 cut(s) 350, 419, 602
AluI AGCT 3 cut(s) 350, 419, 602
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 2 cut(s) 161, 308
AlwI GGATC 1 cut(s) 473
AoxI GGCC 6 cut(s) 6, 36, 220, 285, 408, 539
ApeKI GCWGC 4 cut(s) 419, 548, 599, 750
AspS9I GGNCC 2 cut(s) 334, 540
AsuHPI GGTGA 1 cut(s) 577
AvaII GGWCC 1 cut(s) 334
BalI TGGCCA 2 cut(s) 222, 410
BanII GRGCYC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 394
BbvCI CCTCAGC 1 cut(s) 603
BbvI GCAGC 4 cut(s) 406, 535, 611, 737
BccI CCATC 4 cut(s) 263, 517, 631, 667
BciT130I CCWGG 2 cut(s) 219, 407
BcoDI GTCTC 2 cut(s) 161, 308
BfaI CTAG 2 cut(s) 756, 775
BfuAI ACCTGC 2 cut(s) 221, 619
BisI GCNGC 5 cut(s) 420, 539, 549, 600, 751
BlsI GCNGC 5 cut(s) 421, 540, 550, 601, 752
Bme1390I CCNGG 2 cut(s) 219, 407
Bme18I GGWCC 1 cut(s) 334
BmgT120I GGNCC 2 cut(s) 334, 540
BmrFI CCNGG 2 cut(s) 219, 407
BmrI ACTGGG 1 cut(s) 245
BmsI GCATC 1 cut(s) 487
BmuI ACTGGG 1 cut(s) 245
BpmI CTGGAG 1 cut(s) 416
Bpu10I CCTNAGC 1 cut(s) 603
BpuEI CTTGAG 2 cut(s) 71, 500
BsaAI YACGTR 1 cut(s) 202
BsaI GGTCTC 1 cut(s) 161
BsaJI CCNNGG 4 cut(s) 39, 66, 217, 330
Bse1I ACTGG 2 cut(s) 26, 240
Bse3DI GCAATG 1 cut(s) 9
BseBI CCWGG 2 cut(s) 219, 407
BseDI CCNNGG 4 cut(s) 39, 66, 217, 330
BseGI GGATG 2 cut(s) 187, 771
BseMI GCAATG 1 cut(s) 9
BseMII CTCAG 2 cut(s) 484, 594
BseNI ACTGG 2 cut(s) 26, 240
BseRI GAGGAG 3 cut(s) 326, 620, 623
BseXI GCAGC 4 cut(s) 406, 535, 611, 737
BseYI CCCAGC 1 cut(s) 422
BsgI GTGCAG 1 cut(s) 647
BshFI GGCC 6 cut(s) 8, 38, 222, 287, 410, 541
BsiHKAI GWGCWC 1 cut(s) 394
BslFI GGGAC 1 cut(s) 480
BsmAI GTCTC 2 cut(s) 161, 308
BsmBI CGTCTC 1 cut(s) 308
BsmFI GGGAC 1 cut(s) 480
BsnI GGCC 6 cut(s) 8, 38, 222, 287, 410, 541
Bso31I GGTCTC 1 cut(s) 161
Bsp1286I GDGCHC 2 cut(s) 330, 394
Bsp143I GATC 1 cut(s) 478
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 2 cut(s) 538, 563
BspANI GGCC 6 cut(s) 8, 38, 222, 287, 410, 541
BspCNI CTCAG 2 cut(s) 483, 595
BspMI ACCTGC 2 cut(s) 221, 619
BspPI GGATC 1 cut(s) 473
BspTNI GGTCTC 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 9
BsrI ACTGG 2 cut(s) 26, 240
BssECI CCNNGG 4 cut(s) 39, 66, 217, 330
BssMI GATC 1 cut(s) 478
BssNAI GTATAC 1 cut(s) 147
BssT1I CCWWGG 3 cut(s) 39, 66, 330
Bst1107I GTATAC 1 cut(s) 147
Bst2UI CCWGG 2 cut(s) 219, 407
Bst4CI ACNGT 2 cut(s) 89, 454
BstBAI YACGTR 1 cut(s) 202
BstDEI CTNAG 3 cut(s) 470, 490, 603
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 2 cut(s) 187, 771
BstKTI GATC 1 cut(s) 481
BstMAI GTCTC 2 cut(s) 161, 308
BstMBI GATC 1 cut(s) 478
BstMWI GCNNNNNNNGC 5 cut(s) 116, 398, 407, 416, 428
BstNI CCWGG 2 cut(s) 219, 407
BstSCI CCNGG 2 cut(s) 217, 405
BstV1I GCAGC 4 cut(s) 406, 535, 611, 737
BstZ17I GTATAC 1 cut(s) 147
BsuRI GGCC 6 cut(s) 8, 38, 222, 287, 410, 541
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 2 cut(s) 187, 771
BtsI GCAGTG 3 cut(s) 558, 675, 752
BtsIMutI CAGTG 6 cut(s) 94, 134, 478, 558, 675, 752
BveI ACCTGC 2 cut(s) 221, 619
Cfr13I GGNCC 2 cut(s) 334, 540
CviAII CATG 4 cut(s) 331, 412, 718, 762
DdeI CTNAG 3 cut(s) 470, 490, 603
DpnI GATC 1 cut(s) 480
DpnII GATC 1 cut(s) 478
EaeI YGGCCR 2 cut(s) 220, 408
Eco130I CCWWGG 3 cut(s) 39, 66, 330
Eco24I GRGCYC 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 334
Eco57I CTGAAG 1 cut(s) 158
EcoRII CCWGG 2 cut(s) 217, 405
EcoT14I CCWWGG 3 cut(s) 39, 66, 330
EcoT38I GRGCYC 1 cut(s) 330
ErhI CCWWGG 3 cut(s) 39, 66, 330
Esp3I CGTCTC 1 cut(s) 308
FaeI CATG 4 cut(s) 334, 415, 721, 765
FaqI GGGAC 1 cut(s) 480
FatI CATG 4 cut(s) 330, 411, 717, 761
FblI GTMKAC 1 cut(s) 146
Fnu4HI GCNGC 5 cut(s) 420, 539, 549, 600, 751
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 5 cut(s) 420, 539, 549, 600, 751
FspBI CTAG 2 cut(s) 756, 775
GluI GCNGC 5 cut(s) 420, 539, 549, 600, 751
GsaI CCCAGC 1 cut(s) 426
GsuI CTGGAG 1 cut(s) 416
HaeIII GGCC 6 cut(s) 8, 38, 222, 287, 410, 541
Hin1II CATG 4 cut(s) 334, 415, 721, 765
HinfI GANTC 1 cut(s) 468
HphI GGTGA 1 cut(s) 577
Hpy166II GTNNAC 4 cut(s) 147, 160, 375, 692
Hpy188I TCNGA 1 cut(s) 85
Hpy188III TCNNGA 2 cut(s) 395, 517
Hpy8I GTNNAC 4 cut(s) 147, 160, 375, 692
HpyAV CCTTC 4 cut(s) 28, 90, 116, 658
HpyCH4III ACNGT 2 cut(s) 89, 454
HpyCH4IV ACGT 2 cut(s) 201, 698
HpyCH4V TGCA 3 cut(s) 208, 581, 628
HpyF10VI GCNNNNNNNGC 5 cut(s) 116, 398, 407, 416, 428
HpyF3I CTNAG 3 cut(s) 470, 490, 603
HpySE526I ACGT 2 cut(s) 201, 698
Hsp92II CATG 4 cut(s) 334, 415, 721, 765
Kzo9I GATC 1 cut(s) 478
LmnI GCTCC 1 cut(s) 240
Lsp1109I GCAGC 4 cut(s) 406, 535, 611, 737
LweI GCATC 1 cut(s) 487
MaeI CTAG 2 cut(s) 756, 775
MaeII ACGT 2 cut(s) 201, 698
MalI GATC 1 cut(s) 480
MboI GATC 1 cut(s) 478
MboII GAAGA 3 cut(s) 151, 187, 547
MhlI GDGCHC 2 cut(s) 330, 394
MlsI TGGCCA 2 cut(s) 222, 410
MluCI AATT 1 cut(s) 705
MluNI TGGCCA 2 cut(s) 222, 410
MlyI GAGTC 1 cut(s) 462
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 9 cut(s) 125, 277, 304, 391, 565, 583, 598, 601, 670
Mox20I TGGCCA 2 cut(s) 222, 410
MscI TGGCCA 2 cut(s) 222, 410
MseI TTAA 4 cut(s) 300, 458, 657, 683
MslI CAYNNNNRTG 1 cut(s) 563
Msp20I TGGCCA 2 cut(s) 222, 410
MspA1I CMGCKG 1 cut(s) 602
MspR9I CCNGG 2 cut(s) 219, 407
MvaI CCWGG 2 cut(s) 219, 407
MwoI GCNNNNNNNGC 5 cut(s) 116, 398, 407, 416, 428
NcoI CCATGG 1 cut(s) 330
NdeII GATC 1 cut(s) 478
NlaIII CATG 4 cut(s) 334, 415, 721, 765
OliI CACNNNNGTG 1 cut(s) 563
PaqCI CACCTGC 1 cut(s) 221
PkrI GCNGC 5 cut(s) 421, 540, 550, 601, 752
PleI GAGTC 1 cut(s) 462
PpsI GAGTC 1 cut(s) 462
Ppu21I YACGTR 1 cut(s) 202
Psp1406I AACGTT 1 cut(s) 698
Psp6I CCWGG 2 cut(s) 217, 405
PspFI CCCAGC 1 cut(s) 422
PspGI CCWGG 2 cut(s) 217, 405
PspPI GGNCC 2 cut(s) 334, 540
PvuII CAGCTG 1 cut(s) 602
RseI CAYNNNNRTG 1 cut(s) 563
SaqAI TTAA 4 cut(s) 300, 458, 657, 683
SatI GCNGC 5 cut(s) 420, 539, 549, 600, 751
Sau3AI GATC 1 cut(s) 478
Sau96I GGNCC 2 cut(s) 334, 540
SchI GAGTC 1 cut(s) 462
ScrFI CCNGG 2 cut(s) 219, 407
SduI GDGCHC 2 cut(s) 330, 394
SfaNI GCATC 1 cut(s) 487
SinI GGWCC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 563
SmlI CTYRAG 2 cut(s) 50, 515
SmoI CTYRAG 2 cut(s) 50, 515
Sse9I AATT 1 cut(s) 705
SsiI CCGC 2 cut(s) 538, 563
SspMI CTAG 2 cut(s) 756, 775
StyD4I CCNGG 2 cut(s) 217, 405
StyI CCWWGG 3 cut(s) 39, 66, 330
TaaI ACNGT 2 cut(s) 89, 454
TaiI ACGT 2 cut(s) 204, 701
TasI AATT 1 cut(s) 705
TauI GCSGC 1 cut(s) 541
Tru1I TTAA 4 cut(s) 300, 458, 657, 683
Tru9I TTAA 4 cut(s) 300, 458, 657, 683
TscAI CASTG 6 cut(s) 94, 141, 478, 565, 675, 752
TseI GCWGC 4 cut(s) 419, 548, 599, 750
TspDTI ATGAA 1 cut(s) 750
TspRI CASTG 6 cut(s) 94, 141, 478, 565, 675, 752
VpaK11BI GGWCC 1 cut(s) 334
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 146
XspI CTAG 2 cut(s) 756, 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.