RchiOBHm_Chr7g0235871

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000101
Physical Location & Seq
Forward (+)
60803662 .. 60804264
603 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21137

Sequence Viewer

Length: 603 bp
ATGGAGGTTTTCGAGGAAGCCACCAAAGACTGTGAGGACGAGTACTTGACTAGAGTATTCGGCACGATTGCGGACTACAACTCCCTTAACGATTGTGTAATTAAGTTGTTCGATGCTATGGGAGGTATCGGCATCAGTGACAAAGCCAAAGAGCTGTCTAAGTCTGTCTCTAACTTGGACATTCTGTCTCCAGTGGCTATCTTCAACATGGTCATTATGATCTACTCTGATGCTCGCAATGCCAAGGGTGCTCTCAAGGTCTACCATCACATGATAGCCACTGGTGTCACCCCCGTCTCCTTCACTTACACGATACTCATCTCCACACTTGCACAAGATTTTTCCGACGTAAATTTCCTTGGGTATGCCAAGAAGTATTTTCTTGAAATGTTGGATAAGGGGATGAAGCCCAATCCTACACCCTACATCAATGTTATGGATGCCATTGCCTACCGAGAGACCGAGGAGAAGGCCAAGGTGTTTCTTGAGCAGATAAAAGCCAAGGGGTTCATCCTCCCACACCACACCCCCCCCCGAACATGGTTTTCAATACAAAGAAGGCCACTTCACCGAAGCATTCCAGGCACTGAAGATGTATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

200

Amino Acids

22.57

Weight (kDa)

5.96

Isoelectric Point (pI)

23.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 65 - 111 2e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 261
AciI CCGC 1 cut(s) 71
AcsI RAATTY 1 cut(s) 352
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 540
AgsI TTSAA 3 cut(s) 205, 386, 549
AhdI GACNNNNNGTC 1 cut(s) 184
AjnI CCWGG 1 cut(s) 580
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
Alw21I GWGCWC 1 cut(s) 253
Alw26I GTCTC 4 cut(s) 172, 192, 301, 452
AlwNI CAGNNNCTG 1 cut(s) 587
AoxI GGCC 2 cut(s) 471, 560
ApoI RAATTY 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 280, 560
Bbv12I GWGCWC 1 cut(s) 253
BccI CCATC 1 cut(s) 273
BciT130I CCWGG 1 cut(s) 582
BcoDI GTCTC 4 cut(s) 172, 192, 301, 452
BfaI CTAG 1 cut(s) 51
BmcAI AGTACT 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 582
BmeRI GACNNNNNGTC 1 cut(s) 184
BmrFI CCNGG 1 cut(s) 582
BmsI GCATC 4 cut(s) 103, 141, 220, 430
BpmI CTGGAG 1 cut(s) 174
BpuEI CTTGAG 2 cut(s) 239, 506
BsaBI GATNNNNATC 1 cut(s) 317
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 5 cut(s) 243, 358, 462, 474, 501
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bsc4I CCNNNNNNNGG 1 cut(s) 540
Bse1I ACTGG 2 cut(s) 191, 286
Bse3DI GCAATG 2 cut(s) 244, 444
Bse8I GATNNNNATC 1 cut(s) 317
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 5 cut(s) 243, 358, 462, 474, 501
BseGI GGATG 3 cut(s) 408, 445, 510
BseJI GATNNNNATC 1 cut(s) 317
BseLI CCNNNNNNNGG 1 cut(s) 540
BseMI GCAATG 2 cut(s) 244, 444
BseNI ACTGG 2 cut(s) 191, 286
BseRI GAGGAG 1 cut(s) 479
BshFI GGCC 2 cut(s) 473, 562
BsiHKAI GWGCWC 1 cut(s) 253
BslI CCNNNNNNNGG 1 cut(s) 540
BsmAI GTCTC 4 cut(s) 172, 192, 301, 452
BsmBI CGTCTC 1 cut(s) 301
BsmI GAATGC 1 cut(s) 576
BsnI GGCC 2 cut(s) 473, 562
Bso31I GGTCTC 1 cut(s) 452
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 1 cut(s) 219
BspACI CCGC 1 cut(s) 71
BspANI GGCC 2 cut(s) 473, 562
BspTNI GGTCTC 1 cut(s) 452
BsrDI GCAATG 2 cut(s) 244, 444
BsrI ACTGG 2 cut(s) 191, 286
BssECI CCNNGG 5 cut(s) 243, 358, 462, 474, 501
BssMI GATC 1 cut(s) 219
BssT1I CCWWGG 4 cut(s) 243, 358, 474, 501
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 1 cut(s) 159
BstF5I GGATG 3 cut(s) 408, 445, 510
BstKTI GATC 1 cut(s) 222
BstMAI GTCTC 4 cut(s) 172, 192, 301, 452
BstMBI GATC 1 cut(s) 219
BstMWI GCNNNNNNNGC 3 cut(s) 239, 248, 582
BstNI CCWGG 1 cut(s) 582
BstSCI CCNGG 1 cut(s) 580
BsuRI GGCC 2 cut(s) 473, 562
BtsCI GGATG 3 cut(s) 408, 445, 510
BtsIMutI CAGTG 4 cut(s) 142, 198, 279, 585
Cac8I GCNNGC 1 cut(s) 235
CaiI CAGNNNCTG 1 cut(s) 587
Csp6I GTAC 1 cut(s) 43
CviAII CATG 3 cut(s) 208, 271, 540
CviJI RGCY 9 cut(s) 20, 146, 154, 197, 278, 409, 473, 500, 562
CviKI_1 RGCY 9 cut(s) 20, 146, 154, 197, 278, 409, 473, 500, 562
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 1 cut(s) 159
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
DriI GACNNNNNGTC 1 cut(s) 184
Eam1105I GACNNNNNGTC 1 cut(s) 184
Eco130I CCWWGG 4 cut(s) 243, 358, 474, 501
Eco31I GGTCTC 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 580
EcoT14I CCWWGG 4 cut(s) 243, 358, 474, 501
ErhI CCWWGG 4 cut(s) 243, 358, 474, 501
Esp3I CGTCTC 1 cut(s) 301
FaeI CATG 3 cut(s) 211, 274, 543
FaiI YATR 8 cut(s) 119, 209, 218, 272, 366, 437, 541, 598
FatI CATG 3 cut(s) 207, 270, 539
FblI GTMKAC 1 cut(s) 261
FokI GGATG 3 cut(s) 415, 452, 497
FspBI CTAG 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 2 cut(s) 473, 562
Hin1II CATG 3 cut(s) 211, 274, 543
HphI GGTGA 2 cut(s) 280, 560
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 2 cut(s) 229, 346
Hpy188III TCNNGA 2 cut(s) 383, 485
Hpy8I GTNNAC 1 cut(s) 262
Hpy99I CGWCG 1 cut(s) 350
HpyAV CCTTC 3 cut(s) 310, 463, 552
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 348
HpyCH4V TGCA 1 cut(s) 332
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 248, 582
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 348
Hsp92II CATG 3 cut(s) 211, 274, 543
Kzo9I GATC 1 cut(s) 219
LpnPI CCDG 4 cut(s) 204, 267, 567, 594
LweI GCATC 4 cut(s) 103, 141, 220, 430
MaeI CTAG 1 cut(s) 51
MaeII ACGT 1 cut(s) 348
MaeIII GTNAC 2 cut(s) 137, 286
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 2 cut(s) 193, 602
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 2 cut(s) 99, 352
MmeI TCCRAC 2 cut(s) 369, 372
MnlI CCTC 5 cut(s) 7, 28, 116, 457, 524
MseI TTAA 2 cut(s) 87, 102
MspR9I CCNGG 1 cut(s) 582
Mva1269I GAATGC 1 cut(s) 576
MvaI CCWGG 1 cut(s) 582
MwoI GCNNNNNNNGC 3 cut(s) 239, 248, 582
NdeII GATC 1 cut(s) 219
NlaIII CATG 3 cut(s) 211, 274, 543
NmuCI GTSAC 2 cut(s) 137, 286
PctI GAATGC 1 cut(s) 576
Psp6I CCWGG 1 cut(s) 580
PspGI CCWGG 1 cut(s) 580
PstNI CAGNNNCTG 1 cut(s) 587
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
SaqAI TTAA 2 cut(s) 87, 102
Sau3AI GATC 1 cut(s) 219
ScaI AGTACT 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 582
SduI GDGCHC 1 cut(s) 253
SetI ASST 6 cut(s) 9, 127, 156, 261, 351, 480
SfaNI GCATC 4 cut(s) 103, 141, 220, 430
SmlI CTYRAG 2 cut(s) 254, 485
SmoI CTYRAG 2 cut(s) 254, 485
Sse9I AATT 2 cut(s) 99, 352
SsiI CCGC 1 cut(s) 71
SspMI CTAG 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 580
StyI CCWWGG 4 cut(s) 243, 358, 474, 501
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 351
TaqI TCGA 2 cut(s) 12, 111
TaqII GACCGA 1 cut(s) 476
TasI AATT 2 cut(s) 99, 352
TatI WGTACW 1 cut(s) 42
Tru1I TTAA 2 cut(s) 87, 102
Tru9I TTAA 2 cut(s) 87, 102
TscAI CASTG 4 cut(s) 142, 198, 286, 592
TseFI GTSAC 2 cut(s) 137, 286
Tsp45I GTSAC 2 cut(s) 137, 286
TspDTI ATGAA 2 cut(s) 419, 499
TspRI CASTG 4 cut(s) 142, 198, 286, 592
XapI RAATTY 1 cut(s) 352
XmiI GTMKAC 1 cut(s) 261
XspI CTAG 1 cut(s) 51
ZrmI AGTACT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.