Rmu_sc0011173.1_g000009

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011173.1
OG0000101
Physical Location & Seq
Forward (+)
30121 .. 30624
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011173.1_g000009.1.cds

Sequence Viewer

Length: 411 bp
atgttttatgctttgatagcgggtgccaatgcaagcctggtcagggagctctgcgagcaaaattctgagacgggtatatatcccactgtcatgtttcacacttttgttattgaagactacctcaaggctggcaagactaagggtgctctggaggcgtacaggggcatgctagcttctgggatgatggacaagggaatgaggcccaatgctgctacctacactgcagtcatagaagggtttgcaaggcaagaggacaaggaagccgaggaggaaggtaaacagttggtggaggtcatgatgggtaaggggtttgagccaaatgtaaaggatatgatggaggttttaaagggaagaccaaaaggtattataagaagggtcatcagcattgttctttccaagttgaagggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

136

Amino Acids

15.04

Weight (kDa)

7.79

Isoelectric Point (pI)

28.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 368
AccB1I GGYRCC 1 cut(s) 23
AciI CCGC 1 cut(s) 20
AcsI RAATTY 1 cut(s) 61
AfaI GTAC 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 2 cut(s) 113, 403
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 2 cut(s) 49, 173
AluI AGCT 2 cut(s) 49, 173
Alw21I GWGCWC 2 cut(s) 51, 148
Alw26I GTCTC 1 cut(s) 62
AoxI GGCC 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 201
AsuNHI GCTAGC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 51
BbsI GAAGAC 2 cut(s) 120, 358
Bbv12I GWGCWC 2 cut(s) 51, 148
BbvI GCAGC 1 cut(s) 196
BccI CCATC 3 cut(s) 178, 292, 328
BciT130I CCWGG 1 cut(s) 38
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 38
BmgT120I GGNCC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 25
BmrFI CCNGG 1 cut(s) 38
BmtI GCTAGC 1 cut(s) 173
BpiI GAAGAC 2 cut(s) 120, 358
BpmI CTGGAG 1 cut(s) 170
BpuEI CTTGAG 1 cut(s) 107
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 43
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 281
BseXI GCAGC 1 cut(s) 196
BshFI GGCC 1 cut(s) 202
BshNI GGYRCC 1 cut(s) 23
BsiHKAI GWGCWC 2 cut(s) 51, 148
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 62
BsmBI CGTCTC 1 cut(s) 62
BsnI GGCC 1 cut(s) 202
Bsp1286I GDGCHC 2 cut(s) 51, 148
BspACI CCGC 1 cut(s) 20
BspANI GGCC 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 58
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 25
BspMAI CTGCAG 1 cut(s) 226
BspOI GCTAGC 1 cut(s) 173
BspT107I GGYRCC 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 2 cut(s) 88, 282
BstC8I GCNNGC 5 cut(s) 34, 56, 130, 167, 171
BstDEI CTNAG 2 cut(s) 66, 138
BstF5I GGATG 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 62
BstMWI GCNNNNNNNGC 3 cut(s) 17, 55, 152
BstNI CCWGG 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 1 cut(s) 36
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 196
BstV2I GAAGAC 2 cut(s) 120, 358
BsuRI GGCC 1 cut(s) 202
BtsCI GGATG 1 cut(s) 186
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 84, 219
Cac8I GCNNGC 5 cut(s) 34, 56, 130, 167, 171
CciI TCATGA 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 157
CviAII CATG 3 cut(s) 91, 166, 295
CviJI RGCY 8 cut(s) 36, 49, 128, 173, 202, 263, 316, 408
CviKI_1 RGCY 8 cut(s) 36, 49, 128, 173, 202, 263, 316, 408
CviQI GTAC 1 cut(s) 157
DdeI CTNAG 2 cut(s) 66, 138
DraI TTTAAA 1 cut(s) 345
Ecl136II GAGCTC 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 36
EcoT38I GRGCYC 1 cut(s) 51
Esp3I CGTCTC 1 cut(s) 62
FaeI CATG 3 cut(s) 94, 169, 298
FaiI YATR 9 cut(s) 9, 77, 79, 92, 167, 230, 296, 332, 368
FatI CATG 3 cut(s) 90, 165, 294
FauI CCCGC 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 193
FriOI GRGCYC 1 cut(s) 51
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 1 cut(s) 170
GluI GCNGC 1 cut(s) 210
GsuI CTGGAG 1 cut(s) 170
HaeIII GGCC 1 cut(s) 202
Hin1II CATG 3 cut(s) 94, 169, 298
Hpy166II GTNNAC 1 cut(s) 278
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 2 cut(s) 149, 295
Hpy8I GTNNAC 1 cut(s) 278
HpyAV CCTTC 4 cut(s) 227, 266, 366, 397
HpyCH4III ACNGT 2 cut(s) 88, 282
HpyCH4V TGCA 3 cut(s) 32, 224, 242
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 55, 152
HpyF3I CTNAG 2 cut(s) 66, 138
Hsp92II CATG 3 cut(s) 94, 169, 298
LmnI GCTCC 1 cut(s) 46
LpnPI CCDG 7 cut(s) 23, 28, 50, 114, 134, 145, 162
Lsp1109I GCAGC 1 cut(s) 196
MaeI CTAG 1 cut(s) 170
MboII GAAGA 2 cut(s) 125, 363
MhlI GDGCHC 2 cut(s) 51, 148
MluCI AATT 1 cut(s) 61
MnlI CCTC 8 cut(s) 131, 145, 192, 244, 259, 262, 283, 331
MseI TTAA 1 cut(s) 344
MslI CAYNNNNRTG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 38
MvaI CCWGG 1 cut(s) 38
MwoI GCNNNNNNNGC 3 cut(s) 17, 55, 152
NheI GCTAGC 1 cut(s) 169
NlaIII CATG 3 cut(s) 94, 169, 298
NlaIV GGNNCC 1 cut(s) 25
NmeAIII GCCGAG 1 cut(s) 289
NspI RCATGY 1 cut(s) 169
PaeI GCATGC 1 cut(s) 169
PagI TCATGA 1 cut(s) 294
PkrI GCNGC 1 cut(s) 211
PsiI TTATAA 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 25
PspPI GGNCC 1 cut(s) 201
PstI CTGCAG 1 cut(s) 226
RsaI GTAC 1 cut(s) 158
RsaNI GTAC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 89
SacI GAGCTC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 1 cut(s) 210
Sau96I GGNCC 1 cut(s) 201
ScrFI CCNGG 1 cut(s) 38
SduI GDGCHC 2 cut(s) 51, 148
SetI ASST 8 cut(s) 51, 123, 175, 218, 277, 294, 342, 364
SfcI CTRYAG 1 cut(s) 222
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SphI GCATGC 1 cut(s) 169
Sse9I AATT 1 cut(s) 61
SsiI CCGC 1 cut(s) 20
SspMI CTAG 1 cut(s) 170
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 88, 282
TasI AATT 1 cut(s) 61
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TscAI CASTG 2 cut(s) 91, 226
TseI GCWGC 1 cut(s) 209
TspRI CASTG 2 cut(s) 91, 226
XapI RAATTY 1 cut(s) 61
XceI RCATGY 1 cut(s) 169
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XspI CTAG 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.