Rh1DG165200

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000101
Physical Location & Seq
Reverse (-)
33889776 .. 33896249
6474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG165200.1

Sequence Viewer

Length: 1461 bp
ATGTTCAGTTCTCTGGCAGATTGCGGCTTCCGTGATGAAGCAAGAGAGCTCTTTAAGCCTCACTCTGAGCAGACCACACTGCCGGAAGTGGCTGTCTTCACCATGGTGATTATGGCCTACGCCGCCAATGGCAAGACCAAGGATGCTCACAAGGTCTACCAGCAGATGATATCATCTGGTGACACCCCCACCACCTACACTTACACTTTAATCATCTGCGGAATGGCAAAAAACTTTTCAGATTCTAATTTCGTCGGGTATGCCAAGAAGTATTTCCTTGAAATGTTGGACAGGGGGATGAAGCCCCAATATCAACCCTACATGTATGTTATGGATGCCATTGCCTACCGAGAGCCAGTGGAGGAGGCCAAAAAGTTCCTTGAGCAGATAAAAGCTAAGGGGTTCATCCCTGTCATCGATGATTTTCTGTACAAAGAAAACCACCTCACAGAAGCATTGCAGGCAATGAAAACGTATGCTGATCTCGTCGTCAACAACAACACTGACAAGGCTGTTCAAAAATTGTTCCGCCAGTCACGCCTCTCCCCTTGGATAGAACGGTCGATGGAGGTGCACAAGGCTTTGGTAGAGGATGGAAATGTGGACGAGGCCATCGAGTTCTATCATACCATTCAACAGACAGGCGTAGAGCCATTGGTCCAAATCCACACCTCTGTTATTAAAGCCTACCTCAAGTTTGGCAAGACCAAGGGTGCTCTGGAGGCGTATCTGGCCATGTTAGCTGCTGGGGTTGCCCCCAACTCCTACACATACACTGTTTTAATCAGGGGACTCTGTGTTGACCCCAACTTCTTTGGAGATGCCAAGAAGTACTTGCTTGAGATGATGGACAAGGGGAAGCAGCCTAATGTTGCTGCCTGTACTGCGGTGATAGAAGGCTTTGTGCTTTGGGAGGACAAGACAGCTGAGGAGAAGGGCAAACAGTTTGTGGAGATGATGATGGCACCAACAACAAACCATATATGGACAAAACTTGAGCAACCACTGCCTGCTACAACTTCTTCTAGGCACACCATCTCTAATTGGGTAAGATGGATTTTGGGCTCCCTTTTGTCAATTTTGATTCCTGTTTGGACGCACAAGTACTGGGGAAATCTGCAAAAGATTGAAGGGGAGGCAGAGGTGGTCATGGAAGAGGTTGACAATGTAGCAAAAGTCGTAGAAAGAGTGGCAACTGTGGCTGAGAAGGTGTCAGCCGATGTAGCTGATAAACTTCCAACTGATCATACAAGACTAAAAGAAATTGCTTTGCTGATTGAACGAGTATCCGAACTGGCTGCTCAAGATGCTCAACTAACACAAGATTTTATTCACAAGGTGGATGCACTGAAGCAAGACCTGGGAGACTTAAAGACACTGGTGGAGCCAGTTGTTGATAAGATAGAGAACTATGAATTTCAAGGAAACTACTCTCCAGTTTCTACAAAAGAACAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

486

Amino Acids

55.02

Weight (kDa)

5.45

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 28 - 77 9.4e-11 PPR repeat family
TPR_24 PF23276 204 - 306 2.2e-07 Fungal tetratrico peptide repeats
PPR_2 PF13041 224 - 266 4.3e-11 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 964
AccI GTMKAC 1 cut(s) 156
AciI CCGC 5 cut(s) 24, 123, 219, 529, 887
AcoI YGGCCR 1 cut(s) 732
AcsI RAATTY 1 cut(s) 1415
AcuI CTGAAG 1 cut(s) 1370
AdeI CACNNNGTG 1 cut(s) 1339
AfaI GTAC 4 cut(s) 431, 833, 883, 1106
AflIII ACRYGT 1 cut(s) 321
AgsI TTSAA 6 cut(s) 281, 518, 635, 1130, 1280, 1421
AjnI CCWGG 1 cut(s) 1359
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
AleI CACNNNNGTG 1 cut(s) 104
AluBI AGCT 5 cut(s) 49, 395, 743, 926, 1226
AluI AGCT 5 cut(s) 49, 395, 743, 926, 1226
Alw21I GWGCWC 3 cut(s) 51, 576, 718
Alw26I GTCTC 1 cut(s) 1359
Alw44I GTGCAC 1 cut(s) 572
AoxI GGCC 4 cut(s) 114, 366, 609, 732
ApaLI GTGCAC 1 cut(s) 572
ApeKI GCWGC 4 cut(s) 743, 862, 875, 1298
ApoI RAATTY 1 cut(s) 1415
Asp700I GAANNNNTTC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 658
AsuHPI GGTGA 4 cut(s) 91, 118, 191, 901
AvaII GGWCC 1 cut(s) 658
BaeGI GKGCMC 1 cut(s) 576
BalI TGGCCA 1 cut(s) 734
BanI GGYRCC 1 cut(s) 964
BanII GRGCYC 2 cut(s) 51, 1067
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 3 cut(s) 51, 576, 718
BbvCI CCTCAGC 1 cut(s) 927
BbvI GCAGC 4 cut(s) 730, 862, 874, 1285
BccI CCATC 7 cut(s) 559, 587, 620, 841, 955, 1043, 1047
BcgI CGANNNNNNTGC 4 cut(s) 553, 587, 1280, 1314
BciT130I CCWGG 1 cut(s) 1361
BciVI GTATCC 1 cut(s) 1297
BclI TGATCA 1 cut(s) 1243
BcoDI GTCTC 1 cut(s) 1359
BfaI CTAG 1 cut(s) 1026
BfuI GTATCC 1 cut(s) 1297
BisI GCNGC 6 cut(s) 25, 123, 744, 863, 876, 1299
BlsI GCNGC 6 cut(s) 26, 124, 745, 864, 877, 1300
BmcAI AGTACT 2 cut(s) 833, 1106
Bme1390I CCNGG 1 cut(s) 1361
Bme18I GGWCC 1 cut(s) 658
BmgT120I GGNCC 1 cut(s) 658
BmiI GGNNCC 3 cut(s) 966, 1066, 1386
BmrFI CCNGG 1 cut(s) 1361
BmrI ACTGGG 1 cut(s) 1117
BmsI GCATC 5 cut(s) 133, 325, 811, 1297, 1333
BmuI ACTGGG 1 cut(s) 1117
BpiI GAAGAC 1 cut(s) 88
BpmI CTGGAG 2 cut(s) 740, 1419
Bpu10I CCTNAGC 2 cut(s) 396, 927
BpuEI CTTGAG 5 cut(s) 401, 677, 860, 1016, 1287
Bsa29I ATCGAT 1 cut(s) 417
BsaJI CCNNGG 5 cut(s) 102, 138, 548, 708, 1360
Bse1I ACTGG 7 cut(s) 356, 532, 1112, 1299, 1383, 1388, 1436
Bse3DI GCAATG 3 cut(s) 339, 455, 471
BseBI CCWGG 1 cut(s) 1361
BseCI ATCGAT 1 cut(s) 417
BseDI CCNNGG 5 cut(s) 102, 138, 548, 708, 1360
BseGI GGATG 6 cut(s) 148, 303, 340, 405, 598, 1348
BseMI GCAATG 3 cut(s) 339, 455, 471
BseMII CTCAG 3 cut(s) 57, 918, 1194
BseNI ACTGG 7 cut(s) 356, 532, 1112, 1299, 1383, 1388, 1436
BseRI GAGGAG 2 cut(s) 377, 944
BseSI GKGCMC 1 cut(s) 576
BseXI GCAGC 4 cut(s) 730, 862, 874, 1285
BseYI CCCAGC 1 cut(s) 746
Bsh1285I CGRYCG 1 cut(s) 563
BshFI GGCC 4 cut(s) 116, 368, 611, 734
BshNI GGYRCC 1 cut(s) 964
BshVI ATCGAT 1 cut(s) 417
BsiEI CGRYCG 1 cut(s) 563
BsiHKAI GWGCWC 3 cut(s) 51, 576, 718
BsiSI CCGG 1 cut(s) 83
BslFI GGGAC 1 cut(s) 804
BsmAI GTCTC 1 cut(s) 1359
BsmFI GGGAC 1 cut(s) 804
BsnI GGCC 4 cut(s) 116, 368, 611, 734
Bsp1286I GDGCHC 4 cut(s) 51, 576, 718, 1067
Bsp1407I TGTACA 1 cut(s) 429
Bsp143I GATC 2 cut(s) 481, 1243
Bsp19I CCATGG 1 cut(s) 102
BspACI CCGC 5 cut(s) 24, 123, 219, 529, 887
BspANI GGCC 4 cut(s) 116, 368, 611, 734
BspCNI CTCAG 3 cut(s) 58, 919, 1195
BspDI ATCGAT 1 cut(s) 417
BspLI GGNNCC 3 cut(s) 966, 1066, 1386
BspT107I GGYRCC 1 cut(s) 964
BsrDI GCAATG 3 cut(s) 339, 455, 471
BsrGI TGTACA 1 cut(s) 429
BsrI ACTGG 7 cut(s) 356, 532, 1112, 1299, 1383, 1388, 1436
BssECI CCNNGG 5 cut(s) 102, 138, 548, 708, 1360
BssMI GATC 2 cut(s) 481, 1243
BssT1I CCWWGG 4 cut(s) 102, 138, 548, 708
Bst2UI CCWGG 1 cut(s) 1361
Bst4CI ACNGT 4 cut(s) 561, 778, 945, 1198
Bst6I CTCTTC 1 cut(s) 1149
BstAPI GCANNNNNTGC 1 cut(s) 1006
BstAUI TGTACA 1 cut(s) 429
BstC8I GCNNGC 2 cut(s) 462, 1011
BstDEI CTNAG 4 cut(s) 66, 396, 927, 1203
BstDSI CCRYGG 1 cut(s) 102
BstF5I GGATG 6 cut(s) 148, 303, 340, 405, 598, 1348
BstKTI GATC 2 cut(s) 484, 1246
BstMAI GTCTC 1 cut(s) 1359
BstMBI GATC 2 cut(s) 481, 1243
BstMCI CGRYCG 1 cut(s) 563
BstNI CCWGG 1 cut(s) 1361
BstNSI RCATGY 1 cut(s) 325
BstSCI CCNGG 1 cut(s) 1359
BstSLI GKGCMC 1 cut(s) 576
BstV1I GCAGC 4 cut(s) 730, 862, 874, 1285
BstV2I GAAGAC 1 cut(s) 88
Bsu15I ATCGAT 1 cut(s) 417
BsuI GTATCC 1 cut(s) 1297
BsuRI GGCC 4 cut(s) 116, 368, 611, 734
BsuTUI ATCGAT 1 cut(s) 417
BtgI CCRYGG 1 cut(s) 102
BtsCI GGATG 6 cut(s) 148, 303, 340, 405, 598, 1348
BtsI GCAGTG 2 cut(s) 77, 1004
BtsIMutI CAGTG 7 cut(s) 77, 363, 501, 774, 1004, 1346, 1376
Cac8I GCNNGC 2 cut(s) 462, 1011
Cfr13I GGNCC 1 cut(s) 658
ClaI ATCGAT 1 cut(s) 417
CseI GACGC 1 cut(s) 1105
Csp6I GTAC 4 cut(s) 430, 832, 882, 1105
CviAII CATG 4 cut(s) 103, 322, 736, 1150
CviQI GTAC 4 cut(s) 430, 832, 882, 1105
DdeI CTNAG 4 cut(s) 66, 396, 927, 1203
DpnI GATC 2 cut(s) 483, 1245
DpnII GATC 2 cut(s) 481, 1243
DraIII CACNNNGTG 1 cut(s) 1339
EaeI YGGCCR 1 cut(s) 732
Eam1104I CTCTTC 1 cut(s) 1149
EarI CTCTTC 1 cut(s) 1149
EciI GGCGGA 1 cut(s) 518
Ecl136II GAGCTC 1 cut(s) 49
Eco130I CCWWGG 4 cut(s) 102, 138, 548, 708
Eco24I GRGCYC 2 cut(s) 51, 1067
Eco32I GATATC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 658
Eco53kI GAGCTC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 1370
EcoICRI GAGCTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 1359
EcoRV GATATC 1 cut(s) 171
EcoT14I CCWWGG 4 cut(s) 102, 138, 548, 708
EcoT38I GRGCYC 2 cut(s) 51, 1067
ErhI CCWWGG 4 cut(s) 102, 138, 548, 708
FaeI CATG 4 cut(s) 106, 325, 739, 1153
FalI AAGNNNNNCTT 2 cut(s) 818, 850
FaqI GGGAC 1 cut(s) 804
FatI CATG 4 cut(s) 102, 321, 735, 1149
FbaI TGATCA 1 cut(s) 1243
FblI GTMKAC 1 cut(s) 156
Fnu4HI GCNGC 6 cut(s) 25, 123, 744, 863, 876, 1299
FokI GGATG 6 cut(s) 155, 310, 347, 392, 605, 1355
FriOI GRGCYC 2 cut(s) 51, 1067
Fsp4HI GCNGC 6 cut(s) 25, 123, 744, 863, 876, 1299
FspBI CTAG 1 cut(s) 1026
GluI GCNGC 6 cut(s) 25, 123, 744, 863, 876, 1299
GsaI CCCAGC 1 cut(s) 750
GsuI CTGGAG 2 cut(s) 740, 1419
HaeIII GGCC 4 cut(s) 116, 368, 611, 734
HapII CCGG 1 cut(s) 83
HgaI GACGC 1 cut(s) 1105
Hin1II CATG 4 cut(s) 106, 325, 739, 1153
HincII GTYRAC 3 cut(s) 493, 802, 1162
HindII GTYRAC 3 cut(s) 493, 802, 1162
HinfI GANTC 3 cut(s) 242, 792, 1084
HpaII CCGG 1 cut(s) 83
HphI GGTGA 4 cut(s) 91, 118, 191, 901
Hpy166II GTNNAC 6 cut(s) 157, 493, 574, 604, 802, 1162
Hpy188I TCNGA 3 cut(s) 67, 241, 1291
Hpy188III TCNNGA 2 cut(s) 719, 1304
Hpy8I GTNNAC 6 cut(s) 157, 493, 574, 604, 802, 1162
Hpy99I CGWCG 2 cut(s) 257, 491
HpyAV CCTTC 4 cut(s) 890, 928, 1124, 1201
HpyCH4III ACNGT 4 cut(s) 561, 778, 945, 1198
HpyCH4IV ACGT 1 cut(s) 473
HpyCH4V TGCA 4 cut(s) 460, 574, 1120, 1346
HpyF3I CTNAG 4 cut(s) 66, 396, 927, 1203
HpySE526I ACGT 1 cut(s) 473
Hsp92II CATG 4 cut(s) 106, 325, 739, 1153
Ksp22I TGATCA 1 cut(s) 1243
Kzo9I GATC 2 cut(s) 481, 1243
LmnI GCTCC 2 cut(s) 1070, 1384
Lsp1109I GCAGC 4 cut(s) 730, 862, 874, 1285
LweI GCATC 5 cut(s) 133, 325, 811, 1297, 1333
MaeI CTAG 1 cut(s) 1026
MaeII ACGT 1 cut(s) 473
MaeIII GTNAC 2 cut(s) 179, 534
MalI GATC 2 cut(s) 483, 1245
MboI GATC 2 cut(s) 481, 1243
MboII GAAGA 3 cut(s) 88, 1014, 1166
MhlI GDGCHC 4 cut(s) 51, 576, 718, 1067
MlsI TGGCCA 1 cut(s) 734
MluCI AATT 7 cut(s) 247, 521, 1042, 1077, 1263, 1415, 1456
MluNI TGGCCA 1 cut(s) 734
MlyI GAGTC 1 cut(s) 786
MmeI TCCRAC 2 cut(s) 267, 1262
Mox20I TGGCCA 1 cut(s) 734
MroXI GAANNNNTTC 1 cut(s) 272
MscI TGGCCA 1 cut(s) 734
MseI TTAA 6 cut(s) 54, 209, 681, 782, 1370, 1459
MslI CAYNNNNRTG 1 cut(s) 104
Msp20I TGGCCA 1 cut(s) 734
MspA1I CMGCKG 1 cut(s) 926
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 1361
MvaI CCWGG 1 cut(s) 1361
NcoI CCATGG 1 cut(s) 102
NdeII GATC 2 cut(s) 481, 1243
NlaIII CATG 4 cut(s) 106, 325, 739, 1153
NlaIV GGNNCC 3 cut(s) 966, 1066, 1386
NmuCI GTSAC 2 cut(s) 179, 534
NspI RCATGY 1 cut(s) 325
OliI CACNNNNGTG 1 cut(s) 104
PciI ACATGT 1 cut(s) 321
PcsI WCGNNNNNNNCGW 1 cut(s) 612
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 2 cut(s) 242, 1084
PkrI GCNGC 6 cut(s) 26, 124, 745, 864, 877, 1300
PleI GAGTC 1 cut(s) 786
PpsI GAGTC 1 cut(s) 786
PscI ACATGT 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 1359
PspFI CCCAGC 1 cut(s) 746
PspGI CCWGG 1 cut(s) 1359
PspN4I GGNNCC 3 cut(s) 966, 1066, 1386
PspPI GGNCC 1 cut(s) 658
PvuII CAGCTG 1 cut(s) 926
RsaI GTAC 4 cut(s) 431, 833, 883, 1106
RsaNI GTAC 4 cut(s) 430, 832, 882, 1105
RseI CAYNNNNRTG 1 cut(s) 104
SacI GAGCTC 1 cut(s) 51
SaqAI TTAA 6 cut(s) 54, 209, 681, 782, 1370, 1459
SatI GCNGC 6 cut(s) 25, 123, 744, 863, 876, 1299
Sau3AI GATC 2 cut(s) 481, 1243
Sau96I GGNCC 1 cut(s) 658
ScaI AGTACT 2 cut(s) 833, 1106
SchI GAGTC 1 cut(s) 786
ScrFI CCNGG 1 cut(s) 1361
SduI GDGCHC 4 cut(s) 51, 576, 718, 1067
SfaNI GCATC 5 cut(s) 133, 325, 811, 1297, 1333
SinI GGWCC 1 cut(s) 658
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 5 cut(s) 380, 692, 839, 995, 1302
SmoI CTYRAG 5 cut(s) 380, 692, 839, 995, 1302
Sse9I AATT 7 cut(s) 247, 521, 1042, 1077, 1263, 1415, 1456
SsiI CCGC 5 cut(s) 24, 123, 219, 529, 887
SspMI CTAG 1 cut(s) 1026
SstI GAGCTC 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 1359
StyI CCWWGG 4 cut(s) 102, 138, 548, 708
TaaI ACNGT 4 cut(s) 561, 778, 945, 1198
TaiI ACGT 1 cut(s) 476
TaqI TCGA 3 cut(s) 417, 563, 615
TasI AATT 7 cut(s) 247, 521, 1042, 1077, 1263, 1415, 1456
TatI WGTACW 4 cut(s) 429, 831, 881, 1104
TauI GCSGC 2 cut(s) 27, 125
TfiI GAWTC 2 cut(s) 242, 1084
Tru1I TTAA 6 cut(s) 54, 209, 681, 782, 1370, 1459
Tru9I TTAA 6 cut(s) 54, 209, 681, 782, 1370, 1459
TscAI CASTG 7 cut(s) 84, 363, 508, 781, 1011, 1353, 1383
TseFI GTSAC 2 cut(s) 179, 534
TseI GCWGC 4 cut(s) 743, 862, 875, 1298
Tsp45I GTSAC 2 cut(s) 179, 534
TspDTI ATGAA 5 cut(s) 51, 314, 394, 482, 1428
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 7 cut(s) 84, 363, 508, 781, 1011, 1353, 1383
VneI GTGCAC 1 cut(s) 572
VpaK11BI GGWCC 1 cut(s) 658
XapI RAATTY 1 cut(s) 1415
XceI RCATGY 1 cut(s) 325
XcmI CCANNNNNNNNNTGG 2 cut(s) 109, 715
XmiI GTMKAC 1 cut(s) 156
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 1 cut(s) 1026
ZrmI AGTACT 2 cut(s) 833, 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.