FvH4_5g05670

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000101
Physical Location & Seq
Reverse (-)
3352307 .. 3355002
2696 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05670.t1

Sequence Viewer

Length: 1806 bp
ATGGCGGACAACGCTGAGTTGAAATCGACGGTTCTCCTCGCCGATTCGGCAGTCGATGACCTGGAGCTGCCGCCGGAGGACTTGCGAGAAGTACTTGAAGAGATGTGTACCGAGGAAGCTCTGAGCAGGAATACAATCAAGATGGTGGAGGGTTTGTTGAGGGATGGCTTCATGGATGTGGGATTGGAGATTGGGACTAAGGTTCAGGAGACCAATGTGGTTCCCAGGGTGGTCACTGACACTGCCGTCATGGAGCACTACATCAGTGCTGCTGGAGACAGGACCAAGGATGCTCTCAGAGTGTTCAAGCACATGTCGGTTTTTGGGGTGGAACCAAATGCCTACACGTATGCCATCATCATCAAGGCTCTTGCTGCTGCAGACCTTAAGAAGAACCCCGATTTTGTTGGTTATGCGAAGAAGTACTTTGTGGAGATGTTGGAGAGGGGAATGCAGCCGAATGAGGAGACTTATGAGGCTGTGTTGGATGGCATTGGCCGCGGTGAGAACAAGGCCGAGGCTGAGGAGGAGCGCAGGGAGTTTGTGGAGGATGTGAAAGCAAAGGGGTTTCTGCTGGTGCTCCAGAAGGAGGCGGAGGAGATGGCTAATCCTCCACCATTAAAGTCTGAGATGGATATGCTTAAGGAACATGTGATGAAGGTGTTTGAGGATGTCATCAGAGACTTTGAGGACAAGAACGAGCAAAAGAGATTAAGACAGATGGCGGAGGATTATGACTCACTGAGCTCAGTTGCACATACTTTTTATAAAGGTTTGTCAAGTAAAGGGCTCACTGAGGAAGCCAAAGAGCTCTTTAAGCCTTTGTTGGAGACAGCCATACTTCCTGATGAGGCTGTCTTTACCATCGTCATCCTTCTTAGCAAGAGCACGGGTGATGGTCTGAAAGTATATGAGCATATGCTAGCTTATGGGATCACCCCCAGCTCCTGCACTTACAGTGTACTCATTGCGAAACTTTCTCTTGATCGCAATTTCATTGGGCATGCCAAGAAGTTTTACCTGGAAATGTTGGACAAGGGTATAAAGCCCTGTTTGAGGACCAGCTTGGGTTTGTTCAATGGCATTGCTTGCTTTGAGTCAGTGGAGAATGCCGAGGAGTTTCGTGAGCGTGTAAAGCCTAATGGGGACTTGCCCGATCCTGGTGAAGGCCGTGAAGGCCTTTTCACTGAGCTAATGAAGGCATATCAGTTGTATGGTGATCTCCAAAAGAAAACCACCGACAAAGATATTCAAGAAGTTATCCGCAAGATATCAGATGAAGGTTTCGAGAAACATGCAGCGAAAATGTTCTGTGCTATGGTTGAAGATGGCAATGTCGGTGAGGCAATGGATCTCTTTCAATCGACACCTGAGACTCGCATCAATCCCATGGTCATAGTCCACACCAATGTCATTGAAGCGTACATCAAATGTAACAAGAACAAGGATGCTCTCCAGACCTACCTGGACATGTTAGCTGCTGGACTTGCACCTAACTCCTACATTTACAGTGTTTTGATCAAGGGACTCGCTGTTGATGCCAACTTCTTTGGAGATGCCAAGAAGTATTTGATTGAGATGCTGGACAAGGGCATGCATCCAAATGCTGCTACCTACACTGCAGTGTTAGAAGGTTTTGCTCAGCAGGAGGACAAGAAAGCTGATGAAGAGGGAAAAGAGTTTCTGGAGGTCATGATGGCTAAGGGGTTTGTCCCTGATACCGAGGCTGTGAGGGAGGTGTTGAAGGGCAGACCGGCACCTGTATTTGACAGGGTCATGAGCATTATCCTTTCCAAGTTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

602

Amino Acids

67.36

Weight (kDa)

4.85

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 75 - 125 1.7e-08 PPR repeat family
PPR_2 PF13041 465 - 511 1.2e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 768
AasI GACNNNNNNGTC 1 cut(s) 245
AccB1I GGYRCC 1 cut(s) 1756
AccII CGCG 1 cut(s) 501
AciI CCGC 7 cut(s) 5, 71, 499, 501, 593, 725, 1264
AclWI GGATC 3 cut(s) 941, 1151, 1359
AcoI YGGCCR 1 cut(s) 496
AfaI GTAC 5 cut(s) 93, 109, 425, 963, 1424
AfiI CCNNNNNNNGG 4 cut(s) 589, 1056, 1160, 1166
AflII CTTAAG 2 cut(s) 386, 641
AflIII ACRYGT 4 cut(s) 312, 345, 649, 1470
AgsI TTSAA 9 cut(s) 22, 98, 307, 1078, 1253, 1325, 1361, 1418, 1744
AjnI CCWGG 5 cut(s) 60, 224, 1020, 1159, 1464
AleI CACNNNNGTG 1 cut(s) 1622
Alw21I GWGCWC 5 cut(s) 258, 582, 749, 813, 890
Alw26I GTCTC 6 cut(s) 203, 270, 461, 675, 824, 1367
AlwI GGATC 3 cut(s) 941, 1151, 1359
AlwNI CAGNNNCTG 1 cut(s) 948
AoxI GGCC 4 cut(s) 496, 513, 1168, 1177
ApeKI GCWGC 8 cut(s) 67, 269, 374, 377, 454, 1298, 1478, 1607
Asp700I GAANNNNTTC 1 cut(s) 1307
AspLEI GCGC 1 cut(s) 534
AspS9I GGNCC 2 cut(s) 282, 1059
AsuHPI GGTGA 6 cut(s) 515, 905, 928, 1175, 1229, 1352
AsuNHI GCTAGC 1 cut(s) 922
AvaII GGWCC 2 cut(s) 282, 1059
BanI GGYRCC 1 cut(s) 1756
BanII GRGCYC 3 cut(s) 749, 792, 813
Bbv12I GWGCWC 5 cut(s) 258, 582, 749, 813, 890
BbvCI CCTCAGC 1 cut(s) 522
BbvI GCAGC 8 cut(s) 54, 256, 361, 364, 466, 1310, 1465, 1594
BceAI ACGGC 2 cut(s) 230, 1155
BcgI CGANNNNNNTGC 2 cut(s) 1277, 1311
BciT130I CCWGG 5 cut(s) 62, 226, 1022, 1161, 1466
BclI TGATCA 1 cut(s) 1518
BcoDI GTCTC 6 cut(s) 203, 270, 461, 675, 824, 1367
BfaI CTAG 1 cut(s) 923
BfmI CTRYAG 2 cut(s) 378, 1620
BfrI CTTAAG 2 cut(s) 386, 641
BglI GCCNNNNNGGC 2 cut(s) 47, 1176
BlpI GCTNAGC 1 cut(s) 1641
BmcAI AGTACT 2 cut(s) 93, 425
Bme1390I CCNGG 5 cut(s) 62, 226, 1022, 1161, 1466
Bme18I GGWCC 2 cut(s) 282, 1059
BmgT120I GGNCC 2 cut(s) 282, 1059
BmiI GGNNCC 3 cut(s) 222, 333, 1758
BmrFI CCNGG 5 cut(s) 62, 226, 1022, 1161, 1466
BmsI GCATC 7 cut(s) 280, 1389, 1438, 1528, 1546, 1569, 1606
BmtI GCTAGC 1 cut(s) 926
BpmI CTGGAG 5 cut(s) 83, 294, 566, 1439, 1706
Bpu10I CCTNAGC 2 cut(s) 522, 1701
Bpu1102I GCTNAGC 1 cut(s) 1641
BsaAI YACGTR 1 cut(s) 348
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 9 cut(s) 111, 224, 225, 285, 499, 516, 1113, 1389, 1722
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 4 cut(s) 589, 1056, 1160, 1166
Bse118I RCCGGY 1 cut(s) 1753
Bse3DI GCAATG 4 cut(s) 966, 1083, 1339, 1353
BseBI CCWGG 5 cut(s) 62, 226, 1022, 1161, 1466
BseDI CCNNGG 9 cut(s) 111, 224, 225, 285, 499, 516, 1113, 1389, 1722
BseGI GGATG 9 cut(s) 169, 181, 295, 493, 556, 676, 870, 1453, 1597
BseLI CCNNNNNNNGG 4 cut(s) 589, 1056, 1160, 1166
BseMI GCAATG 4 cut(s) 966, 1083, 1339, 1353
BseRI GAGGAG 6 cut(s) 26, 479, 539, 542, 611, 1130
BseXI GCAGC 8 cut(s) 54, 256, 361, 364, 466, 1310, 1465, 1594
BseYI CCCAGC 1 cut(s) 941
BsgI GTGCAG 1 cut(s) 934
Bsh1236I CGCG 1 cut(s) 501
BshFI GGCC 4 cut(s) 498, 515, 1170, 1179
BshNI GGYRCC 1 cut(s) 1756
BsiHKAI GWGCWC 5 cut(s) 258, 582, 749, 813, 890
BsiSI CCGG 2 cut(s) 74, 1754
BslFI GGGAC 4 cut(s) 208, 1160, 1539, 1697
BslI CCNNNNNNNGG 4 cut(s) 589, 1056, 1160, 1166
BsmAI GTCTC 6 cut(s) 203, 270, 461, 675, 824, 1367
BsmFI GGGAC 4 cut(s) 208, 1160, 1539, 1697
BsmI GAATGC 2 cut(s) 456, 1114
BsnI GGCC 4 cut(s) 498, 515, 1170, 1179
Bso31I GGTCTC 1 cut(s) 203
Bsp1286I GDGCHC 6 cut(s) 258, 582, 749, 792, 813, 890
Bsp143I GATC 6 cut(s) 933, 985, 1156, 1219, 1351, 1518
Bsp1720I GCTNAGC 1 cut(s) 1641
Bsp19I CCATGG 1 cut(s) 1389
BspACI CCGC 7 cut(s) 5, 71, 499, 501, 593, 725, 1264
BspANI GGCC 4 cut(s) 498, 515, 1170, 1179
BspFNI CGCG 1 cut(s) 501
BspHI TCATGA 2 cut(s) 1692, 1776
BspLI GGNNCC 3 cut(s) 222, 333, 1758
BspMAI CTGCAG 2 cut(s) 382, 1624
BspOI GCTAGC 1 cut(s) 926
BspPI GGATC 3 cut(s) 941, 1151, 1359
BspT107I GGYRCC 1 cut(s) 1756
BspTI CTTAAG 2 cut(s) 386, 641
BspTNI GGTCTC 1 cut(s) 203
BsrDI GCAATG 4 cut(s) 966, 1083, 1339, 1353
BsrFI RCCGGY 1 cut(s) 1753
BssAI RCCGGY 1 cut(s) 1753
BssECI CCNNGG 9 cut(s) 111, 224, 225, 285, 499, 516, 1113, 1389, 1722
BssMI GATC 6 cut(s) 933, 985, 1156, 1219, 1351, 1518
BssT1I CCWWGG 2 cut(s) 285, 1389
Bst2UI CCWGG 5 cut(s) 62, 226, 1022, 1161, 1466
Bst4CI ACNGT 3 cut(s) 31, 959, 1511
Bst6I CTCTTC 2 cut(s) 93, 1662
BstAFI CTTAAG 2 cut(s) 386, 641
BstAPI GCANNNNNTGC 1 cut(s) 1089
BstBAI YACGTR 1 cut(s) 348
BstC8I GCNNGC 4 cut(s) 924, 1005, 1090, 1595
BstDSI CCRYGG 2 cut(s) 499, 1389
BstENI CCTNNNNNAGG 2 cut(s) 1054, 1164
BstF5I GGATG 9 cut(s) 169, 181, 295, 493, 556, 676, 870, 1453, 1597
BstFNI CGCG 1 cut(s) 501
BstHHI GCGC 1 cut(s) 534
BstKTI GATC 6 cut(s) 936, 988, 1159, 1222, 1354, 1521
BstMAI GTCTC 6 cut(s) 203, 270, 461, 675, 824, 1367
BstMBI GATC 6 cut(s) 933, 985, 1156, 1219, 1351, 1518
BstNI CCWGG 5 cut(s) 62, 226, 1022, 1161, 1466
BstNSI RCATGY 6 cut(s) 316, 653, 1007, 1298, 1474, 1597
BstSCI CCNGG 5 cut(s) 60, 224, 1020, 1159, 1464
BstSFI CTRYAG 2 cut(s) 378, 1620
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 8 cut(s) 54, 256, 361, 364, 466, 1310, 1465, 1594
BstX2I RGATCY 1 cut(s) 1351
BstYI RGATCY 1 cut(s) 1351
BsuRI GGCC 4 cut(s) 498, 515, 1170, 1179
BtgI CCRYGG 2 cut(s) 499, 1389
BtsCI GGATG 9 cut(s) 169, 181, 295, 493, 556, 676, 870, 1453, 1597
BtsI GCAGTG 3 cut(s) 240, 1617, 1629
Cac8I GCNNGC 4 cut(s) 924, 1005, 1090, 1595
CaiI CAGNNNCTG 1 cut(s) 948
CciI TCATGA 2 cut(s) 1692, 1776
CfoI GCGC 1 cut(s) 534
Cfr10I RCCGGY 1 cut(s) 1753
Cfr13I GGNCC 2 cut(s) 282, 1059
Cfr42I CCGCGG 1 cut(s) 502
Csp6I GTAC 5 cut(s) 92, 108, 424, 962, 1423
CviQI GTAC 5 cut(s) 92, 108, 424, 962, 1423
DpnI GATC 6 cut(s) 935, 987, 1158, 1221, 1353, 1520
DpnII GATC 6 cut(s) 933, 985, 1156, 1219, 1351, 1518
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 496
Eam1104I CTCTTC 2 cut(s) 93, 1662
EarI CTCTTC 2 cut(s) 93, 1662
EciI GGCGGA 3 cut(s) 20, 608, 740
Ecl136II GAGCTC 2 cut(s) 747, 811
Eco130I CCWWGG 2 cut(s) 285, 1389
Eco147I AGGCCT 1 cut(s) 1179
Eco24I GRGCYC 3 cut(s) 749, 792, 813
Eco31I GGTCTC 1 cut(s) 203
Eco32I GATATC 1 cut(s) 1272
Eco47I GGWCC 2 cut(s) 282, 1059
Eco53kI GAGCTC 2 cut(s) 747, 811
EcoICRI GAGCTC 2 cut(s) 747, 811
EcoNI CCTNNNNNAGG 2 cut(s) 1054, 1164
EcoRII CCWGG 5 cut(s) 60, 224, 1020, 1159, 1464
EcoRV GATATC 1 cut(s) 1272
EcoT14I CCWWGG 2 cut(s) 285, 1389
EcoT22I ATGCAT 1 cut(s) 1599
EcoT38I GRGCYC 3 cut(s) 749, 792, 813
ErhI CCWWGG 2 cut(s) 285, 1389
FalI AAGNNNNNCTT 2 cut(s) 410, 442
FaqI GGGAC 4 cut(s) 208, 1160, 1539, 1697
FauNDI CATATG 1 cut(s) 918
FbaI TGATCA 1 cut(s) 1518
FokI GGATG 9 cut(s) 176, 188, 302, 500, 563, 683, 857, 1460, 1584
FriOI GRGCYC 3 cut(s) 749, 792, 813
FspBI CTAG 1 cut(s) 923
GlaI GCGC 1 cut(s) 533
GsaI CCCAGC 1 cut(s) 945
GsuI CTGGAG 5 cut(s) 83, 294, 566, 1439, 1706
HaeIII GGCC 4 cut(s) 498, 515, 1170, 1179
HapII CCGG 2 cut(s) 74, 1754
HhaI GCGC 1 cut(s) 534
Hin6I GCGC 1 cut(s) 532
HinP1I GCGC 1 cut(s) 532
HinfI GANTC 5 cut(s) 44, 737, 1097, 1375, 1527
HpaII CCGG 2 cut(s) 74, 1754
HphI GGTGA 6 cut(s) 515, 905, 928, 1175, 1229, 1352
Hpy166II GTNNAC 3 cut(s) 108, 962, 1402
Hpy188I TCNGA 6 cut(s) 123, 299, 628, 680, 903, 1276
Hpy8I GTNNAC 3 cut(s) 108, 962, 1402
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 9 cut(s) 580, 652, 884, 1160, 1169, 1192, 1274, 1625, 1738
HpyCH4III ACNGT 3 cut(s) 31, 959, 1511
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 8 cut(s) 380, 454, 755, 951, 1298, 1490, 1597, 1622
HpySE526I ACGT 1 cut(s) 347
HspAI GCGC 1 cut(s) 532
Ksp22I TGATCA 1 cut(s) 1518
KspI CCGCGG 1 cut(s) 502
Kzo9I GATC 6 cut(s) 933, 985, 1156, 1219, 1351, 1518
LmnI GCTCC 5 cut(s) 64, 253, 529, 585, 950
Lsp1109I GCAGC 8 cut(s) 54, 256, 361, 364, 466, 1310, 1465, 1594
LweI GCATC 7 cut(s) 280, 1389, 1438, 1528, 1546, 1569, 1606
MaeI CTAG 1 cut(s) 923
MaeII ACGT 1 cut(s) 347
MaeIII GTNAC 2 cut(s) 232, 1433
MalI GATC 6 cut(s) 935, 987, 1158, 1221, 1353, 1520
MboI GATC 6 cut(s) 933, 985, 1156, 1219, 1351, 1518
MboII GAAGA 5 cut(s) 110, 403, 430, 1337, 1679
MflI RGATCY 1 cut(s) 1351
MhlI GDGCHC 6 cut(s) 258, 582, 749, 792, 813, 890
MluCI AATT 1 cut(s) 991
MlyI GAGTC 4 cut(s) 731, 1106, 1369, 1521
MmeI TCCRAC 5 cut(s) 420, 465, 807, 1011, 1779
Mph1103I ATGCAT 1 cut(s) 1599
MroXI GAANNNNTTC 1 cut(s) 1307
MseI TTAA 5 cut(s) 387, 620, 642, 713, 816
MslI CAYNNNNRTG 4 cut(s) 176, 1407, 1602, 1622
MspA1I CMGCKG 1 cut(s) 501
MspCI CTTAAG 2 cut(s) 386, 641
MspI CCGG 2 cut(s) 74, 1754
MspR9I CCNGG 5 cut(s) 62, 226, 1022, 1161, 1466
Mva1269I GAATGC 2 cut(s) 456, 1114
MvaI CCWGG 5 cut(s) 62, 226, 1022, 1161, 1466
MvnI CGCG 1 cut(s) 501
NcoI CCATGG 1 cut(s) 1389
NdeI CATATG 1 cut(s) 918
NdeII GATC 6 cut(s) 933, 985, 1156, 1219, 1351, 1518
NheI GCTAGC 1 cut(s) 922
NlaIV GGNNCC 3 cut(s) 222, 333, 1758
NmeAIII GCCGAG 2 cut(s) 541, 1138
NmuCI GTSAC 1 cut(s) 232
NsiI ATGCAT 1 cut(s) 1599
NspI RCATGY 6 cut(s) 316, 653, 1007, 1298, 1474, 1597
OliI CACNNNNGTG 1 cut(s) 1622
PaeI GCATGC 2 cut(s) 1007, 1597
PagI TCATGA 2 cut(s) 1692, 1776
PasI CCCWGGG 1 cut(s) 225
PceI AGGCCT 1 cut(s) 1179
PciI ACATGT 3 cut(s) 312, 649, 1470
PctI GAATGC 2 cut(s) 456, 1114
PdmI GAANNNNTTC 1 cut(s) 1307
PfeI GAWTC 1 cut(s) 44
PflFI GACNNNGTC 1 cut(s) 1772
PleI GAGTC 4 cut(s) 731, 1105, 1369, 1521
PpsI GAGTC 4 cut(s) 731, 1105, 1369, 1521
Ppu21I YACGTR 1 cut(s) 348
PscI ACATGT 3 cut(s) 312, 649, 1470
PsiI TTATAA 1 cut(s) 768
Psp124BI GAGCTC 2 cut(s) 749, 813
Psp6I CCWGG 5 cut(s) 60, 224, 1020, 1159, 1464
PspFI CCCAGC 1 cut(s) 941
PspGI CCWGG 5 cut(s) 60, 224, 1020, 1159, 1464
PspN4I GGNNCC 3 cut(s) 222, 333, 1758
PspPI GGNCC 2 cut(s) 282, 1059
PstI CTGCAG 2 cut(s) 382, 1624
PstNI CAGNNNCTG 1 cut(s) 948
PsuI RGATCY 1 cut(s) 1351
PsyI GACNNNGTC 1 cut(s) 1772
RsaI GTAC 5 cut(s) 93, 109, 425, 963, 1424
RsaNI GTAC 5 cut(s) 92, 108, 424, 962, 1423
RseI CAYNNNNRTG 4 cut(s) 176, 1407, 1602, 1622
SacI GAGCTC 2 cut(s) 749, 813
SacII CCGCGG 1 cut(s) 502
SaqAI TTAA 5 cut(s) 387, 620, 642, 713, 816
Sau3AI GATC 6 cut(s) 933, 985, 1156, 1219, 1351, 1518
Sau96I GGNCC 2 cut(s) 282, 1059
ScaI AGTACT 2 cut(s) 93, 425
SchI GAGTC 4 cut(s) 731, 1106, 1369, 1521
ScrFI CCNGG 5 cut(s) 62, 226, 1022, 1161, 1466
SduI GDGCHC 6 cut(s) 258, 582, 749, 792, 813, 890
SfaNI GCATC 7 cut(s) 280, 1389, 1438, 1528, 1546, 1569, 1606
SfcI CTRYAG 2 cut(s) 378, 1620
SfiI GGCCNNNNNGGCC 1 cut(s) 1176
Sfr303I CCGCGG 1 cut(s) 502
SgrBI CCGCGG 1 cut(s) 502
SinI GGWCC 2 cut(s) 282, 1059
SmiMI CAYNNNNRTG 4 cut(s) 176, 1407, 1602, 1622
SmlI CTYRAG 2 cut(s) 386, 641
SmoI CTYRAG 2 cut(s) 386, 641
SphI GCATGC 2 cut(s) 1007, 1597
Sse9I AATT 1 cut(s) 991
SseBI AGGCCT 1 cut(s) 1179
SsiI CCGC 7 cut(s) 5, 71, 499, 501, 593, 725, 1264
SspMI CTAG 1 cut(s) 923
SstI GAGCTC 2 cut(s) 749, 813
StuI AGGCCT 1 cut(s) 1179
StyD4I CCNGG 5 cut(s) 60, 224, 1020, 1159, 1464
StyI CCWWGG 2 cut(s) 285, 1389
TaaI ACNGT 3 cut(s) 31, 959, 1511
TaiI ACGT 1 cut(s) 350
TaqI TCGA 4 cut(s) 26, 54, 1287, 1364
TasI AATT 1 cut(s) 991
TatI WGTACW 3 cut(s) 91, 423, 961
TauI GCSGC 2 cut(s) 73, 501
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 5 cut(s) 387, 620, 642, 713, 816
Tru9I TTAA 5 cut(s) 387, 620, 642, 713, 816
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 8 cut(s) 67, 269, 374, 377, 454, 1298, 1478, 1607
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 6 cut(s) 160, 671, 985, 1211, 1293, 1680
Tth111I GACNNNGTC 1 cut(s) 1772
Vha464I CTTAAG 2 cut(s) 386, 641
VpaK11BI GGWCC 2 cut(s) 282, 1059
XagI CCTNNNNNAGG 2 cut(s) 1054, 1164
XceI RCATGY 6 cut(s) 316, 653, 1007, 1298, 1474, 1597
XmnI GAANNNNTTC 1 cut(s) 1307
XspI CTAG 1 cut(s) 923
ZrmI AGTACT 2 cut(s) 93, 425
Zsp2I ATGCAT 1 cut(s) 1599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.