RchiOBHm_Chr7g0236021

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000101
Physical Location & Seq
Forward (+)
60888042 .. 60889322
1281 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21151

Sequence Viewer

Length: 873 bp
ATGGCGGAAACTAGTTCCCCCAATTCGTCTGCTGATGACCTCAAGAACCATGTAATGAAGATTTTCCAGGAAGCCACCAAAGACTGTGAGGACGAGTGCTTGAAAGCAGTATTTTGCACCATTGGGAGGAGCTACGATTCCCTTAACGATTTTTCGATTAAGTTGTTCAATTCTATGGCAGATACCGGCATCATTGACAGAGCCAGAGAGATGTTTAAGCCTGTCTCTGACTTGGGCATTCTATCTCCAGTGGCTGTCTTCACCATTGTGATTATGACCTACGCCGGTAATCACAAGGCCAAGAGTGCTCTTAAGGTCTACCAGCAAATGATAGCCACTGGTATCAACCCCGCCTGCTACACTTACGTTCAACTCATCTGTGTACTTGCAACAGACTTTTCCAATGTAAAGTTCCTTAGGTATGCCAAGAAGTATTTTCTTGAAATGTTGGATAAGGGGATGAAGCCCAATCCTACACCCTTCTGGAAGATTATGGAGGCCATTGCCTACCGAGAGCCAGTGGAGAAGGCCAAGGAGTTCCTTGAGCAGATAAAAGCCAAGGGGTTCATGCCTCCCGACAGTGGTTTTCACTACAAAGAAGCCTACCTCGCCGAAGGAATGCAAACACTGAAGATGTATGCTAATCTTGTCCACAATGACACCATTGATGAGGATGTTAGAAAATACTTCTTCGTGTTGCGCGCCTGCCCTGGCTACGCCGAAAAACTGGGGAGCAAGATGTACAGTGCTTTGGTAGATGATGGAAATGTAGACGAGTATTGTCCTTTCCACCTTGAAGCAGTGATGCTTTGGTTCATGGATGTTATACCAGCAAGCTTTAGGATTAGGGGGCTTCAGATATGGAGGAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

290

Amino Acids

33.08

Weight (kDa)

6.24

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 84 - 130 9.3e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 318, 771
AccII CGCG 1 cut(s) 702
AciI CCGC 2 cut(s) 5, 351
AcuI CTGAAG 2 cut(s) 650, 839
AfaI GTAC 2 cut(s) 384, 743
AfiI CCNNNNNNNGG 2 cut(s) 126, 581
AflII CTTAAG 1 cut(s) 311
AgsI TTSAA 5 cut(s) 103, 169, 371, 443, 797
AhlI ACTAGT 1 cut(s) 11
AjnI CCWGG 2 cut(s) 66, 709
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AleI CACNNNNGTG 1 cut(s) 266
AluBI AGCT 3 cut(s) 132, 837, 870
AluI AGCT 3 cut(s) 132, 837, 870
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 1 cut(s) 229
AlwNI CAGNNNCTG 1 cut(s) 254
AoxI GGCC 3 cut(s) 297, 498, 528
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 2 cut(s) 702, 704
AsuHPI GGTGA 1 cut(s) 253
AxyI CCTNAGG 1 cut(s) 416
BbsI GAAGAC 1 cut(s) 250
Bbv12I GWGCWC 1 cut(s) 310
BccI CCATC 1 cut(s) 755
BciT130I CCWGG 2 cut(s) 68, 711
BcoDI GTCTC 1 cut(s) 229
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 2 cut(s) 12, 871
BfrI CTTAAG 1 cut(s) 311
Bme1390I CCNGG 2 cut(s) 68, 711
BmrFI CCNGG 2 cut(s) 68, 711
BmrI ACTGGG 1 cut(s) 737
BmsI GCATC 2 cut(s) 198, 795
BmuI ACTGGG 1 cut(s) 737
BpiI GAAGAC 1 cut(s) 250
BpmI CTGGAG 1 cut(s) 231
BpuEI CTTGAG 2 cut(s) 26, 563
BsaJI CCNNGG 3 cut(s) 531, 558, 709
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 581
Bse118I RCCGGY 2 cut(s) 185, 284
Bse1I ACTGG 4 cut(s) 248, 343, 518, 732
Bse21I CCTNAGG 1 cut(s) 416
Bse3DI GCAATG 1 cut(s) 501
BseBI CCWGG 2 cut(s) 68, 711
BseDI CCNNGG 3 cut(s) 531, 558, 709
BseGI GGATG 3 cut(s) 465, 679, 826
BseLI CCNNNNNNNGG 2 cut(s) 126, 581
BseMI GCAATG 1 cut(s) 501
BseNI ACTGG 4 cut(s) 248, 343, 518, 732
BsePI GCGCGC 1 cut(s) 700
BseRI GAGGAG 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 702
BshFI GGCC 3 cut(s) 299, 500, 530
BsiHKAI GWGCWC 1 cut(s) 310
BsiSI CCGG 2 cut(s) 186, 285
BslI CCNNNNNNNGG 2 cut(s) 126, 581
BsmAI GTCTC 1 cut(s) 229
BsmI GAATGC 2 cut(s) 237, 624
BsnI GGCC 3 cut(s) 299, 500, 530
Bsp1286I GDGCHC 1 cut(s) 310
Bsp1407I TGTACA 1 cut(s) 741
BspACI CCGC 2 cut(s) 5, 351
BspANI GGCC 3 cut(s) 299, 500, 530
BspFNI CGCG 1 cut(s) 702
BspTI CTTAAG 1 cut(s) 311
BsrDI GCAATG 1 cut(s) 501
BsrFI RCCGGY 2 cut(s) 185, 284
BsrGI TGTACA 1 cut(s) 741
BsrI ACTGG 4 cut(s) 248, 343, 518, 732
BssAI RCCGGY 2 cut(s) 185, 284
BssECI CCNNGG 3 cut(s) 531, 558, 709
BssHII GCGCGC 1 cut(s) 700
BssT1I CCWWGG 2 cut(s) 531, 558
Bst2UI CCWGG 2 cut(s) 68, 711
Bst4CI ACNGT 3 cut(s) 86, 581, 746
BstAFI CTTAAG 1 cut(s) 311
BstAUI TGTACA 1 cut(s) 741
BstC8I GCNNGC 4 cut(s) 355, 702, 706, 835
BstDEI CTNAG 1 cut(s) 416
BstF5I GGATG 3 cut(s) 465, 679, 826
BstFNI CGCG 1 cut(s) 702
BstHHI GCGC 2 cut(s) 702, 704
BstMAI GTCTC 1 cut(s) 229
BstMWI GCNNNNNNNGC 2 cut(s) 305, 608
BstNI CCWGG 2 cut(s) 68, 711
BstSCI CCNGG 2 cut(s) 66, 709
BstUI CGCG 1 cut(s) 702
BstV2I GAAGAC 1 cut(s) 250
Bsu36I CCTNAGG 1 cut(s) 416
BsuRI GGCC 3 cut(s) 299, 500, 530
BtsCI GGATG 3 cut(s) 465, 679, 826
BtsI GCAGTG 1 cut(s) 807
BtsIMutI CAGTG 7 cut(s) 255, 336, 525, 586, 626, 751, 807
Cac8I GCNNGC 4 cut(s) 355, 702, 706, 835
CaiI CAGNNNCTG 1 cut(s) 254
CfoI GCGC 2 cut(s) 702, 704
Cfr10I RCCGGY 2 cut(s) 185, 284
Csp6I GTAC 2 cut(s) 383, 742
CviAII CATG 3 cut(s) 50, 568, 817
CviQI GTAC 2 cut(s) 383, 742
DdeI CTNAG 1 cut(s) 416
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 531, 558
Eco57I CTGAAG 2 cut(s) 650, 839
Eco81I CCTNAGG 1 cut(s) 416
EcoRII CCWGG 2 cut(s) 66, 709
EcoT14I CCWWGG 2 cut(s) 531, 558
ErhI CCWWGG 2 cut(s) 531, 558
FaeI CATG 3 cut(s) 53, 571, 820
FatI CATG 3 cut(s) 49, 567, 816
FauI CCCGC 1 cut(s) 358
FblI GTMKAC 2 cut(s) 318, 771
FokI GGATG 3 cut(s) 472, 686, 833
FspBI CTAG 2 cut(s) 12, 871
GlaI GCGC 2 cut(s) 701, 703
GsuI CTGGAG 1 cut(s) 231
HaeIII GGCC 3 cut(s) 299, 500, 530
HapII CCGG 2 cut(s) 186, 285
HhaI GCGC 2 cut(s) 702, 704
Hin1II CATG 3 cut(s) 53, 571, 820
Hin6I GCGC 2 cut(s) 700, 702
HinP1I GCGC 2 cut(s) 700, 702
HindIII AAGCTT 1 cut(s) 835
HinfI GANTC 1 cut(s) 137
HpaII CCGG 2 cut(s) 186, 285
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 4 cut(s) 319, 383, 652, 772
Hpy188I TCNGA 2 cut(s) 229, 858
Hpy188III TCNNGA 4 cut(s) 43, 440, 484, 575
Hpy8I GTNNAC 4 cut(s) 319, 383, 652, 772
HpyAV CCTTC 3 cut(s) 490, 520, 608
HpyCH4III ACNGT 3 cut(s) 86, 581, 746
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 3 cut(s) 117, 389, 622
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 608
HpyF3I CTNAG 1 cut(s) 416
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 3 cut(s) 53, 571, 820
HspAI GCGC 2 cut(s) 700, 702
LmnI GCTCC 3 cut(s) 129, 732, 867
LweI GCATC 2 cut(s) 198, 795
MaeI CTAG 2 cut(s) 12, 871
MaeII ACGT 1 cut(s) 366
MboII GAAGA 5 cut(s) 70, 250, 499, 643, 682
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 2 cut(s) 22, 169
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 8 cut(s) 50, 82, 120, 490, 582, 617, 664, 858
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 4 cut(s) 144, 159, 216, 312
MslI CAYNNNNRTG 1 cut(s) 266
MspCI CTTAAG 1 cut(s) 311
MspI CCGG 2 cut(s) 186, 285
MspR9I CCNGG 2 cut(s) 68, 711
Mva1269I GAATGC 2 cut(s) 237, 624
MvaI CCWGG 2 cut(s) 68, 711
MvnI CGCG 1 cut(s) 702
MwoI GCNNNNNNNGC 2 cut(s) 305, 608
NlaIII CATG 3 cut(s) 53, 571, 820
OliI CACNNNNGTG 1 cut(s) 266
PauI GCGCGC 1 cut(s) 700
PctI GAATGC 2 cut(s) 237, 624
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 1 cut(s) 137
PfoI TCCNGGA 1 cut(s) 66
Psp6I CCWGG 2 cut(s) 66, 709
PspGI CCWGG 2 cut(s) 66, 709
PstNI CAGNNNCTG 1 cut(s) 254
PteI GCGCGC 1 cut(s) 700
RsaI GTAC 2 cut(s) 384, 743
RsaNI GTAC 2 cut(s) 383, 742
RseI CAYNNNNRTG 1 cut(s) 266
SaqAI TTAA 4 cut(s) 144, 159, 216, 312
ScrFI CCNGG 2 cut(s) 68, 711
SduI GDGCHC 1 cut(s) 310
SfaNI GCATC 2 cut(s) 198, 795
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 3 cut(s) 41, 311, 542
SmoI CTYRAG 3 cut(s) 41, 311, 542
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 2 cut(s) 22, 169
SsiI CCGC 2 cut(s) 5, 351
SspMI CTAG 2 cut(s) 12, 871
StyD4I CCNGG 2 cut(s) 66, 709
StyI CCWWGG 2 cut(s) 531, 558
TaaI ACNGT 3 cut(s) 86, 581, 746
TaiI ACGT 1 cut(s) 369
TaqI TCGA 1 cut(s) 155
TasI AATT 2 cut(s) 22, 169
TatI WGTACW 2 cut(s) 382, 741
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 4 cut(s) 144, 159, 216, 312
Tru9I TTAA 4 cut(s) 144, 159, 216, 312
TscAI CASTG 7 cut(s) 255, 343, 525, 586, 633, 751, 807
TspDTI ATGAA 4 cut(s) 71, 476, 556, 805
TspRI CASTG 7 cut(s) 255, 343, 525, 586, 633, 751, 807
Vha464I CTTAAG 1 cut(s) 311
XmiI GTMKAC 2 cut(s) 318, 771
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 2 cut(s) 12, 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.