Rroxscaffold_3G00225400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000101
Physical Location & Seq
Reverse (-)
8665539 .. 8666753
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00225400.1

Sequence Viewer

Length: 1119 bp
ATGGAGGACACTAGCTTCCACAATTCTTGTGCCGATGACCTCAAGAACCATGTAATGAAGGTTTTCGAGGAGGCCACCACAGACTGTGAGGACAAGGCCTCTCTCTGTGTCGACTGTATTGCCGGATGTAGCTATCCTCACAATGGTCATTCTGGTCTACGCCCCATGCCGAAAATTAAGGCCAAGGCTGCTCTCAAGGCCTATCAGCACATGGTAGCCATTGGTGTCACGCCCACCTCTACTATTTACAATGCACTCATCACAACATTCATAGAAGACTCGTCTTTTGATTCCAGTTTTGTTGGATATGCTAAGAAGTATTTTTTGGAAATGTTGGATAAAGGGATGAAGCGCCATCCTGGTTGCTATATATCTATGTTTGAAGCCATTGCCTGTCGTGAGGCAGTGGATAAGACCAAGGAGTTCCTTGAGCAGATAAAAGCAAAGGGGTTTACTCCTGTCAACTATCTTTATCGCTTTGAAGAACACCACCTCACAGAAGCAGTTAAGGCAATCAGGTTGTACAGTGATCTCGTCAACAACACCACCGACAAGGATTTGCGAAAGGTCTTCTGCAAGTGGCGCATCCGTGGCCTCAAGAAAGAGGCATTGAGGATGTTCCATGCTTTGGTAGATGATGGAGATGTAGACGAGGTCAAGGAGATTGTTAGGCCCACCCTTGGGATAGGCGTGGAATCCATGGTTGTAATACACACCTCCATTATTAAGGCCTACCTTAATGATGGAAAGACCAAGGGAGCTCTCGAGACCTACTGTGGCATGTTAGCTACTGGGGTTTCCCCCAACTCTTACACTTACACTGTTTTAATCAAGGGACTCACTACTGACCCCAACTTTTTTGAAGATGCCAAGAAGTGCTTGCTTGAGATGATGGACAAGGGGAAGCGGCCCAATGTTGCTACTTATACTGCGGTGATAGAGGCCTTTGCAAGGCAAGAGGACAAGGCAGCTAAGGAGGAGGGCAAAGACTTGGTGTGGGTGATGATGAGTAAGGGGTTTGTGCCTAATGCAAAAGCAATGAGGGAGGTTCTAAAAGAACGGCCAACAAATGTAATAAGAAGGGTCATGAATATTGTACTTTCCAAGTTGAAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

372

Amino Acids

41.86

Weight (kDa)

8.51

Isoelectric Point (pI)

26.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 235 - 280 7e-12 PPR repeat family
TPR_24 PF23276 238 - 322 1e-10 Fungal tetratrico peptide repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 628
AccI GTMKAC 3 cut(s) 111, 157, 648
AciI CCGC 2 cut(s) 907, 932
AcoI YGGCCR 1 cut(s) 1061
AfaI GTAC 2 cut(s) 524, 1098
AfiI CCNNNNNNNGG 5 cut(s) 143, 628, 680, 681, 951
AgsI TTSAA 4 cut(s) 383, 482, 863, 1111
AjnI CCWGG 1 cut(s) 358
AjuI GAANNNNNNNTTGG 2 cut(s) 308, 340
AluBI AGCT 5 cut(s) 15, 132, 761, 788, 971
AluI AGCT 5 cut(s) 15, 132, 761, 788, 971
Alw21I GWGCWC 1 cut(s) 763
Alw26I GTCTC 1 cut(s) 761
Ama87I CYCGRG 1 cut(s) 764
ApeKI GCWGC 2 cut(s) 188, 968
ArsI GACNNNNNNTTYG 2 cut(s) 269, 301
Asp700I GAANNNNTTC 1 cut(s) 62
AspLEI GCGC 2 cut(s) 354, 585
AspS9I GGNCC 2 cut(s) 672, 909
AsuHPI GGTGA 2 cut(s) 946, 1012
AvaI CYCGRG 1 cut(s) 764
BanII GRGCYC 1 cut(s) 763
BbsI GAAGAC 2 cut(s) 282, 562
Bbv12I GWGCWC 1 cut(s) 763
BbvI GCAGC 2 cut(s) 175, 980
BccI CCATC 4 cut(s) 363, 632, 737, 886
BceAI ACGGC 1 cut(s) 1076
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 1 cut(s) 360
BcoDI GTCTC 1 cut(s) 761
BfaI CTAG 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 355
BisI GCNGC 3 cut(s) 189, 908, 969
BlsI GCNGC 3 cut(s) 190, 909, 970
Bme1390I CCNGG 1 cut(s) 360
BmeT110I CYCGRG 1 cut(s) 764
BmgT120I GGNCC 2 cut(s) 672, 909
BmrFI CCNGG 1 cut(s) 360
BmrI ACTGGG 1 cut(s) 801
BmsI GCATC 2 cut(s) 594, 856
BmuI ACTGGG 1 cut(s) 801
BpiI GAAGAC 2 cut(s) 282, 562
Bpu10I CCTNAGC 1 cut(s) 972
BpuEI CTTGAG 5 cut(s) 26, 179, 449, 581, 905
BsaI GGTCTC 1 cut(s) 761
BsaJI CCNNGG 6 cut(s) 183, 417, 589, 679, 699, 753
Bsc4I CCNNNNNNNGG 5 cut(s) 143, 628, 680, 681, 951
Bse1I ACTGG 2 cut(s) 294, 796
Bse3DI GCAATG 2 cut(s) 387, 1044
BseBI CCWGG 1 cut(s) 360
BseDI CCNNGG 6 cut(s) 183, 417, 589, 679, 699, 753
BseGI GGATG 5 cut(s) 131, 351, 355, 585, 621
BseLI CCNNNNNNNGG 5 cut(s) 143, 628, 680, 681, 951
BseMI GCAATG 2 cut(s) 387, 1044
BseNI ACTGG 2 cut(s) 294, 796
BseRI GAGGAG 2 cut(s) 83, 992
BseXI GCAGC 2 cut(s) 175, 980
BsiHKAI GWGCWC 1 cut(s) 763
BsiHKCI CYCGRG 1 cut(s) 764
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 849
BslI CCNNNNNNNGG 5 cut(s) 143, 628, 680, 681, 951
BsmAI GTCTC 1 cut(s) 761
BsmFI GGGAC 1 cut(s) 849
Bso31I GGTCTC 1 cut(s) 761
BsoBI CYCGRG 1 cut(s) 764
Bsp1286I GDGCHC 1 cut(s) 763
Bsp1407I TGTACA 1 cut(s) 522
Bsp143I GATC 1 cut(s) 529
Bsp19I CCATGG 1 cut(s) 699
BspACI CCGC 2 cut(s) 907, 932
BspHI TCATGA 1 cut(s) 1086
BspTNI GGTCTC 1 cut(s) 761
BsrDI GCAATG 2 cut(s) 387, 1044
BsrGI TGTACA 1 cut(s) 522
BsrI ACTGG 2 cut(s) 294, 796
BssECI CCNNGG 6 cut(s) 183, 417, 589, 679, 699, 753
BssMI GATC 1 cut(s) 529
BssT1I CCWWGG 5 cut(s) 183, 417, 679, 699, 753
Bst2UI CCWGG 1 cut(s) 360
Bst4CI ACNGT 5 cut(s) 86, 116, 527, 776, 823
BstAUI TGTACA 1 cut(s) 522
BstC8I GCNNGC 1 cut(s) 881
BstDEI CTNAG 2 cut(s) 312, 972
BstDSI CCRYGG 2 cut(s) 589, 699
BstENI CCTNNNNNAGG 1 cut(s) 949
BstF5I GGATG 5 cut(s) 131, 351, 355, 585, 621
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 2 cut(s) 354, 585
BstKTI GATC 1 cut(s) 532
BstMAI GTCTC 1 cut(s) 761
BstMBI GATC 1 cut(s) 529
BstMWI GCNNNNNNNGC 5 cut(s) 188, 197, 509, 582, 591
BstNI CCWGG 1 cut(s) 360
BstNSI RCATGY 1 cut(s) 784
BstSCI CCNGG 1 cut(s) 358
BstV1I GCAGC 2 cut(s) 175, 980
BstV2I GAAGAC 2 cut(s) 282, 562
BtgI CCRYGG 2 cut(s) 589, 699
BtsCI GGATG 5 cut(s) 131, 351, 355, 585, 621
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 3 cut(s) 411, 532, 819
Cac8I GCNNGC 1 cut(s) 881
CciI TCATGA 1 cut(s) 1086
CfoI GCGC 2 cut(s) 354, 585
Cfr13I GGNCC 2 cut(s) 672, 909
Csp6I GTAC 2 cut(s) 523, 1097
CspCI CAANNNNNGTGG 2 cut(s) 8, 43
CviAII CATG 7 cut(s) 50, 166, 211, 623, 700, 781, 1087
CviQI GTAC 2 cut(s) 523, 1097
DdeI CTNAG 2 cut(s) 312, 972
DpnI GATC 1 cut(s) 531
DpnII GATC 1 cut(s) 529
EaeI YGGCCR 1 cut(s) 1061
Ecl136II GAGCTC 1 cut(s) 761
Eco130I CCWWGG 5 cut(s) 183, 417, 679, 699, 753
Eco147I AGGCCT 4 cut(s) 98, 200, 731, 944
Eco24I GRGCYC 1 cut(s) 763
Eco31I GGTCTC 1 cut(s) 761
Eco53kI GAGCTC 1 cut(s) 761
Eco88I CYCGRG 1 cut(s) 764
EcoICRI GAGCTC 1 cut(s) 761
EcoNI CCTNNNNNAGG 1 cut(s) 949
EcoRII CCWGG 1 cut(s) 358
EcoT14I CCWWGG 5 cut(s) 183, 417, 679, 699, 753
EcoT38I GRGCYC 1 cut(s) 763
ErhI CCWWGG 5 cut(s) 183, 417, 679, 699, 753
FaeI CATG 7 cut(s) 53, 169, 214, 626, 703, 784, 1090
FalI AAGNNNNNCTT 2 cut(s) 863, 895
FaqI GGGAC 1 cut(s) 849
FatI CATG 7 cut(s) 49, 165, 210, 622, 699, 780, 1086
FblI GTMKAC 3 cut(s) 111, 157, 648
Fnu4HI GCNGC 3 cut(s) 189, 908, 969
FokI GGATG 5 cut(s) 138, 342, 358, 572, 628
FriOI GRGCYC 1 cut(s) 763
Fsp4HI GCNGC 3 cut(s) 189, 908, 969
FspBI CTAG 1 cut(s) 12
GlaI GCGC 2 cut(s) 353, 584
GluI GCNGC 3 cut(s) 189, 908, 969
HaeII RGCGCY 1 cut(s) 355
HapII CCGG 1 cut(s) 123
HhaI GCGC 2 cut(s) 354, 585
Hin1II CATG 7 cut(s) 53, 169, 214, 626, 703, 784, 1090
Hin6I GCGC 2 cut(s) 352, 583
HinP1I GCGC 2 cut(s) 352, 583
HincII GTYRAC 3 cut(s) 112, 463, 538
HindII GTYRAC 3 cut(s) 112, 463, 538
HinfI GANTC 4 cut(s) 278, 290, 695, 837
HpaII CCGG 1 cut(s) 123
HphI GGTGA 2 cut(s) 946, 1012
Hpy166II GTNNAC 6 cut(s) 112, 158, 453, 463, 538, 649
Hpy188III TCNNGA 6 cut(s) 43, 398, 598, 764, 766, 1087
Hpy8I GTNNAC 6 cut(s) 112, 158, 453, 463, 538, 649
HpyAV CCTTC 2 cut(s) 52, 1074
HpyCH4III ACNGT 5 cut(s) 86, 116, 527, 776, 823
HpyCH4V TGCA 4 cut(s) 254, 576, 950, 1031
HpyF10VI GCNNNNNNNGC 5 cut(s) 188, 197, 509, 582, 591
HpyF3I CTNAG 2 cut(s) 312, 972
Hsp92II CATG 7 cut(s) 53, 169, 214, 626, 703, 784, 1090
HspAI GCGC 2 cut(s) 352, 583
Kzo9I GATC 1 cut(s) 529
LmnI GCTCC 1 cut(s) 758
LpnPI CCDG 9 cut(s) 136, 138, 307, 345, 372, 406, 471, 502, 777
Lsp1109I GCAGC 2 cut(s) 175, 980
LweI GCATC 2 cut(s) 594, 856
MaeI CTAG 1 cut(s) 12
MaeIII GTNAC 1 cut(s) 226
MalI GATC 1 cut(s) 531
MboI GATC 1 cut(s) 529
MboII GAAGA 4 cut(s) 287, 494, 562, 875
MhlI GDGCHC 1 cut(s) 763
MluCI AATT 2 cut(s) 22, 174
MlyI GAGTC 2 cut(s) 272, 831
MmeI TCCRAC 2 cut(s) 283, 315
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 5 cut(s) 177, 507, 726, 738, 827
MspI CCGG 1 cut(s) 123
MspR9I CCNGG 1 cut(s) 360
MvaI CCWGG 1 cut(s) 360
MwoI GCNNNNNNNGC 5 cut(s) 188, 197, 509, 582, 591
NcoI CCATGG 1 cut(s) 699
NdeII GATC 1 cut(s) 529
NlaIII CATG 7 cut(s) 53, 169, 214, 626, 703, 784, 1090
NmuCI GTSAC 1 cut(s) 226
NspI RCATGY 1 cut(s) 784
PaeR7I CTCGAG 1 cut(s) 764
PagI TCATGA 1 cut(s) 1086
PceI AGGCCT 4 cut(s) 98, 200, 731, 944
PdmI GAANNNNTTC 1 cut(s) 62
PfeI GAWTC 2 cut(s) 290, 695
PflFI GACNNNGTC 1 cut(s) 653
PflMI CCANNNNNTGG 1 cut(s) 628
PkrI GCNGC 3 cut(s) 190, 909, 970
PleI GAGTC 2 cut(s) 272, 831
PpsI GAGTC 2 cut(s) 272, 831
Psp124BI GAGCTC 1 cut(s) 763
Psp6I CCWGG 1 cut(s) 358
PspGI CCWGG 1 cut(s) 358
PspPI GGNCC 2 cut(s) 672, 909
PsyI GACNNNGTC 1 cut(s) 653
RsaI GTAC 2 cut(s) 524, 1098
RsaNI GTAC 2 cut(s) 523, 1097
SacI GAGCTC 1 cut(s) 763
SalI GTCGAC 1 cut(s) 110
SaqAI TTAA 5 cut(s) 177, 507, 726, 738, 827
SatI GCNGC 3 cut(s) 189, 908, 969
Sau3AI GATC 1 cut(s) 529
Sau96I GGNCC 2 cut(s) 672, 909
SchI GAGTC 2 cut(s) 272, 831
ScrFI CCNGG 1 cut(s) 360
SduI GDGCHC 1 cut(s) 763
SfaNI GCATC 2 cut(s) 594, 856
Sfr274I CTCGAG 1 cut(s) 764
SlaI CTCGAG 1 cut(s) 764
SmlI CTYRAG 6 cut(s) 41, 194, 428, 596, 764, 884
SmoI CTYRAG 6 cut(s) 41, 194, 428, 596, 764, 884
Sse9I AATT 2 cut(s) 22, 174
SseBI AGGCCT 4 cut(s) 98, 200, 731, 944
SsiI CCGC 2 cut(s) 907, 932
SspI AATATT 1 cut(s) 1093
SspMI CTAG 1 cut(s) 12
SstI GAGCTC 1 cut(s) 763
StuI AGGCCT 4 cut(s) 98, 200, 731, 944
StyD4I CCNGG 1 cut(s) 358
StyI CCWWGG 5 cut(s) 183, 417, 679, 699, 753
TaaI ACNGT 5 cut(s) 86, 116, 527, 776, 823
TaqI TCGA 3 cut(s) 66, 111, 765
TasI AATT 2 cut(s) 22, 174
TatI WGTACW 2 cut(s) 522, 1096
TauI GCSGC 1 cut(s) 910
TfiI GAWTC 2 cut(s) 290, 695
Tru1I TTAA 5 cut(s) 177, 507, 726, 738, 827
Tru9I TTAA 5 cut(s) 177, 507, 726, 738, 827
TscAI CASTG 3 cut(s) 411, 532, 826
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 2 cut(s) 188, 968
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 4 cut(s) 71, 259, 362, 1103
TspGWI ACGGA 1 cut(s) 578
TspRI CASTG 3 cut(s) 411, 532, 826
Tth111I GACNNNGTC 1 cut(s) 653
Van91I CCANNNNNTGG 1 cut(s) 628
XagI CCTNNNNNAGG 1 cut(s) 949
XceI RCATGY 1 cut(s) 784
XhoI CTCGAG 1 cut(s) 764
XmiI GTMKAC 3 cut(s) 111, 157, 648
XmnI GAANNNNTTC 1 cut(s) 62
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.