Rmu_sc0012908.1_g000002

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012908.1
OG0000101
Physical Location & Seq
Reverse (-)
6125 .. 6619
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012908.1_g000002.1.cds

Sequence Viewer

Length: 495 bp
atggcggagactgaggtcaagtccaattcttgtgcggatgacctcgagaaacatgtaatgaaggttttcgaggaggtcaccaaagactgtgaggacaaggaattaaatgagatatttgacaggattaggacctatgacgaccttaacgagtatgcaattttggtgttcgattgtatggcaaatgggaagcttgttgaggaagctagagagctctttaagcctcgctctgagtctgcgtcgacggctgtactgcctgatgtggccatctacacccttatcatctgggcctgcatctctgccggcaagatcatggctgctcacaaggtctaccagcacatgatagccaaaggtgtaggccccacctcctgcacttacattacactcatcaacacacttgcaaataactcatcttctgatgtcagttttgttgggtacgccaagaagtattttttggaaatgttggataaggggatgaagccttatcacacctcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

164

Amino Acids

18.44

Weight (kDa)

5.1

Isoelectric Point (pI)

32.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 239, 327
AciI CCGC 2 cut(s) 5, 35
AcoI YGGCCR 1 cut(s) 261
AfaI GTAC 2 cut(s) 249, 434
AflIII ACRYGT 1 cut(s) 52
AjuI GAANNNNNNNTTGG 2 cut(s) 434, 466
AluBI AGCT 3 cut(s) 190, 203, 211
AluI AGCT 3 cut(s) 190, 203, 211
Alw21I GWGCWC 1 cut(s) 213
Alw26I GTCTC 1 cut(s) 2
Ama87I CYCGRG 1 cut(s) 44
AoxI GGCC 3 cut(s) 261, 285, 355
ApeKI GCWGC 1 cut(s) 314
Asp700I GAANNNNTTC 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 129, 285, 356
AsuHPI GGTGA 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 44
AvaII GGWCC 1 cut(s) 129
BalI TGGCCA 1 cut(s) 263
BanII GRGCYC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 272
BceAI ACGGC 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 204
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme18I GGWCC 1 cut(s) 129
BmeT110I CYCGRG 1 cut(s) 44
BmgT120I GGNCC 3 cut(s) 129, 285, 356
BmiI GGNNCC 1 cut(s) 358
BmsI GCATC 1 cut(s) 300
BoxI GACNNNNGTC 1 cut(s) 14
Bse118I RCCGGY 1 cut(s) 299
BseGI GGATG 2 cut(s) 43, 477
BseMII CTCAG 1 cut(s) 219
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 1 cut(s) 301
BsgI GTGCAG 1 cut(s) 352
BshFI GGCC 3 cut(s) 263, 287, 357
BsiHKAI GWGCWC 1 cut(s) 213
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 1 cut(s) 300
BsmAI GTCTC 1 cut(s) 2
BsnI GGCC 3 cut(s) 263, 287, 357
BsoBI CYCGRG 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 1 cut(s) 306
BspACI CCGC 2 cut(s) 5, 35
BspANI GGCC 3 cut(s) 263, 287, 357
BspCNI CTCAG 2 cut(s) 4, 220
BspLI GGNNCC 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 299
BssAI RCCGGY 1 cut(s) 299
BssMI GATC 1 cut(s) 306
Bst4CI ACNGT 1 cut(s) 89
BstC8I GCNNGC 2 cut(s) 289, 301
BstDEI CTNAG 2 cut(s) 12, 228
BstEII GGTNACC 1 cut(s) 76
BstF5I GGATG 2 cut(s) 43, 477
BstKTI GATC 1 cut(s) 309
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 1 cut(s) 306
BstMWI GCNNNNNNNGC 2 cut(s) 217, 242
BstNSI RCATGY 1 cut(s) 56
BstPAI GACNNNNGTC 1 cut(s) 14
BstPI GGTNACC 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 301
BsuRI GGCC 3 cut(s) 263, 287, 357
BtsCI GGATG 2 cut(s) 43, 477
Cac8I GCNNGC 2 cut(s) 289, 301
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 3 cut(s) 129, 285, 356
CseI GACGC 1 cut(s) 225
Csp6I GTAC 2 cut(s) 248, 433
CviAII CATG 3 cut(s) 53, 310, 337
CviQI GTAC 2 cut(s) 248, 433
DdeI CTNAG 2 cut(s) 12, 228
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
EaeI YGGCCR 1 cut(s) 261
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 211
Eco24I GRGCYC 1 cut(s) 213
Eco47I GGWCC 1 cut(s) 129
Eco53kI GAGCTC 1 cut(s) 211
Eco88I CYCGRG 1 cut(s) 44
Eco91I GGTNACC 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 211
EcoO109I RGGNCCY 2 cut(s) 129, 356
EcoO65I GGTNACC 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 213
FaeI CATG 3 cut(s) 56, 313, 340
FaiI YATR 6 cut(s) 54, 135, 153, 176, 311, 338
FatI CATG 3 cut(s) 52, 309, 336
FblI GTMKAC 2 cut(s) 239, 327
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 2 cut(s) 50, 484
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 1 cut(s) 204
GluI GCNGC 1 cut(s) 315
HaeIII GGCC 3 cut(s) 263, 287, 357
HapII CCGG 1 cut(s) 300
HgaI GACGC 1 cut(s) 225
Hin1II CATG 3 cut(s) 56, 313, 340
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 1 cut(s) 230
HpaII CCGG 1 cut(s) 300
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 240, 328
Hpy188I TCNGA 2 cut(s) 229, 415
Hpy188III TCNNGA 1 cut(s) 46
Hpy8I GTNNAC 2 cut(s) 240, 328
Hpy99I CGWCG 2 cut(s) 241, 244
HpyAV CCTTC 1 cut(s) 55
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 4 cut(s) 155, 291, 369, 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 242
HpyF3I CTNAG 2 cut(s) 12, 228
Hsp92II CATG 3 cut(s) 56, 313, 340
KroI GCCGGC 1 cut(s) 299
KroNI GCCGGC 1 cut(s) 301
Kzo9I GATC 1 cut(s) 306
LpnPI CCDG 7 cut(s) 106, 267, 268, 301, 313, 344, 379
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 1 cut(s) 300
MaeI CTAG 1 cut(s) 204
MaeIII GTNAC 1 cut(s) 76
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MboII GAAGA 1 cut(s) 402
MhlI GDGCHC 1 cut(s) 213
MlsI TGGCCA 1 cut(s) 263
MluCI AATT 3 cut(s) 25, 101, 156
MluNI TGGCCA 1 cut(s) 263
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 441
MnlI CCTC 8 cut(s) 7, 53, 64, 67, 85, 190, 231, 373
Mox20I TGGCCA 1 cut(s) 263
MroNI GCCGGC 1 cut(s) 299
MroXI GAANNNNTTC 1 cut(s) 65
MscI TGGCCA 1 cut(s) 263
MseI TTAA 3 cut(s) 104, 144, 216
Msp20I TGGCCA 1 cut(s) 263
MspI CCGG 1 cut(s) 300
MwoI GCNNNNNNNGC 2 cut(s) 217, 242
NaeI GCCGGC 1 cut(s) 301
NdeII GATC 1 cut(s) 306
NgoMIV GCCGGC 1 cut(s) 299
NlaIII CATG 3 cut(s) 56, 313, 340
NlaIV GGNNCC 1 cut(s) 358
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 1 cut(s) 56
PaeR7I CTCGAG 1 cut(s) 44
PciI ACATGT 1 cut(s) 52
PcsI WCGNNNNNNNCGW 1 cut(s) 144
PdiI GCCGGC 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 316
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PpuMI RGGWCCY 1 cut(s) 129
PscI ACATGT 1 cut(s) 52
PshAI GACNNNNGTC 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 213
Psp5II RGGWCCY 1 cut(s) 129
PspEI GGTNACC 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 358
PspPI GGNCC 3 cut(s) 129, 285, 356
PspPPI RGGWCCY 1 cut(s) 129
RsaI GTAC 2 cut(s) 249, 434
RsaNI GTAC 2 cut(s) 248, 433
SacI GAGCTC 1 cut(s) 213
SalI GTCGAC 1 cut(s) 238
SaqAI TTAA 3 cut(s) 104, 144, 216
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 1 cut(s) 306
Sau96I GGNCC 3 cut(s) 129, 285, 356
SchI GAGTC 1 cut(s) 239
SduI GDGCHC 1 cut(s) 213
SfaNI GCATC 1 cut(s) 300
Sfr274I CTCGAG 1 cut(s) 44
SgrDI CGTCGACG 1 cut(s) 238
SinI GGWCC 1 cut(s) 129
SlaI CTCGAG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 3 cut(s) 25, 101, 156
SsiI CCGC 2 cut(s) 5, 35
SspMI CTAG 1 cut(s) 204
SstI GAGCTC 1 cut(s) 213
TaaI ACNGT 1 cut(s) 89
TaqI TCGA 4 cut(s) 45, 69, 168, 239
TasI AATT 3 cut(s) 25, 101, 156
TatI WGTACW 1 cut(s) 247
Tru1I TTAA 3 cut(s) 104, 144, 216
Tru9I TTAA 3 cut(s) 104, 144, 216
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 74, 488
VpaK11BI GGWCC 1 cut(s) 129
XceI RCATGY 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 44
XmiI GTMKAC 2 cut(s) 239, 327
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 1 cut(s) 204
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.