RchiOBHm_Chr7g0236041

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000101
Physical Location & Seq
Forward (+)
60908036 .. 60908491
456 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21153

Sequence Viewer

Length: 456 bp
ATGGAAGAAGCAATGAAGGCATTGAAGATGTCTGACGTTCTTATCAACGCTACCCCTGATAAGAAGTTGCAAAAACTCTACCGTAAACCCCTCAGGGATGAGTTTCTGAAGATGTTCAAAGCCTTGAAAGCCGATGGCAAGTATGACCAGGCCATGGAGCTCTATAGGCGCGGCTGGGAGACAAACATAATTCCAGAGGTCGTACTTCACACCGGTGTTATTGAAGACTGTCTCAAGGCTGTCAATACCGAGTGTGCTCTGAAGGCTTACCGGACCATGCTAGCTACTAGGGTTGCCCCAAACTTCTATACACACACTGTTTTAATTATGGGACTCACTACTGACGCCAATTTCTGTGGGGATGCCAAGAAGTGCTTGCTTGAGATGAAGGATAGGGGGATGAGACCCAATATGCTGCTACATACACTGCGGTTGCGAAGCAGGAGGACAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

151

Amino Acids

17.5

Weight (kDa)

9.61

Isoelectric Point (pI)

39.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G28420
fragaria_vesca FvH4_3g36751 FvH4_4g16590 FvH4_4g16590 FvH4_4g16590 FvH4_5g05670 FvH4_5g05700 FvH4_5g31002 FvH4_5g31070 FvH4_5g31080 FvH4_5g31080 FvH4_5g31080 FvH4_5g31150 FvH4_5g32070 FvH4_5g32080 FvH4_5g34900 FvH4_5g34930 FvH4_5g34930 FvH4_5g34950 FvH4_5g35000 FvH4_5g35000 FvH4_5g35000 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35050 FvH4_5g35060 FvH4_5g35070 FvH4_5g35071 FvH4_5g35080 FvH4_5g35253 FvH4_5g35254 FvH4_5g35300 FvH4_5g35300 FvH4_5g35320 FvH4_5g35320 FvH4_5g35320 FvH4_5g35322 FvH4_5g35330 FvH4_6g08812 FvH4_7g08990 FvH4_7g08991
rosa_chinensis RchiOBHm_Chr0c11g0499321 RchiOBHm_Chr0c11g0499331 RchiOBHm_Chr0c11g0499401 RchiOBHm_Chr0c11g0499411 RchiOBHm_Chr0c11g0499461 RchiOBHm_Chr0c11g0499471 RchiOBHm_Chr0c11g0499481 RchiOBHm_Chr0c11g0499501 RchiOBHm_Chr0c11g0499511 RchiOBHm_Chr0c11g0499551 RchiOBHm_Chr1g0342791 RchiOBHm_Chr1g0342991 RchiOBHm_Chr4g0419921 RchiOBHm_Chr4g0420021 RchiOBHm_Chr7g0193131 RchiOBHm_Chr7g0218371 RchiOBHm_Chr7g0218381 RchiOBHm_Chr7g0235811 RchiOBHm_Chr7g0235841 RchiOBHm_Chr7g0235851 RchiOBHm_Chr7g0235871 RchiOBHm_Chr7g0235881 RchiOBHm_Chr7g0235901 RchiOBHm_Chr7g0235921 RchiOBHm_Chr7g0235931 RchiOBHm_Chr7g0235941 RchiOBHm_Chr7g0235971 RchiOBHm_Chr7g0235981 RchiOBHm_Chr7g0235991 RchiOBHm_Chr7g0236021 RchiOBHm_Chr7g0236031 RchiOBHm_Chr7g0236041 RchiOBHm_Chr7g0236051 RchiOBHm_Chr7g0236071 RchiOBHm_Chr7g0236101 RchiOBHm_Chr7g0236111 RchiOBHm_Chr7g0236191 RchiOBHm_Chr7g0236201 RchiOBHm_Chr7g0236231 RchiOBHm_Chr7g0236241 RchiOBHm_Chr7g0236331 RchiOBHm_Chr7g0236591 RchiOBHm_Chr7g0236621 RchiOBHm_Chr7g0236631
rosa_laevigata RLG00000000990 RLG00000000992 RLG00000001071 RLG00000001073 RLG00000001074 RLG00000001075 RLG00000001083 RLG00000001096 RLG00000001097 RLG00000001099 RLG00000001106 RLG00000001108 RLG00000001110 RLG00000001112 RLG00000001119 RLG00000001120 RLG00000001123 RLG00000001128 RLG00000001129 RLG00000001130 RLG00000001131 RLG00000001132 RLG00000001133 RLG00000001136 RLG00000001255 RLG00000001929 RLG00000001930 RLG00000001932 RLG00000001934 RLG00000001935 RLG00000001940 RLG00000001942 RLG00000002624 RLG00000004293 RLG00000004294 RLG00000007792 RLG00000030009 RLG00000030011 RLG00000030012 RLG00000030014
rosa_multiflora Rmu_co8114088.1_g000001 Rmu_co8163812.1_g000001 Rmu_co8175782.1_g000001 Rmu_co8217500.1_g000001 Rmu_co8230787.1_g000001 Rmu_co8372547.1_g000001 Rmu_co8409897.1_g000001 Rmu_sc0000755.1_g000001 Rmu_sc0000755.1_g000003 Rmu_sc0002449.1_g000024 Rmu_sc0002536.1_g000007 Rmu_sc0002536.1_g000008 Rmu_sc0002536.1_g000013 Rmu_sc0002536.1_g000014 Rmu_sc0002921.1_g000004 Rmu_sc0002921.1_g000005 Rmu_sc0002921.1_g000007 Rmu_sc0003339.1_g000004 Rmu_sc0003461.1_g000006 Rmu_sc0005998.1_g000001 Rmu_sc0008183.1_g000003 Rmu_sc0008183.1_g000007 Rmu_sc0008183.1_g000009 Rmu_sc0008183.1_g000010 Rmu_sc0008183.1_g000011 Rmu_sc0008183.1_g000020 Rmu_sc0008183.1_g000022 Rmu_sc0008183.1_g000026 Rmu_sc0008940.1_g000007 Rmu_sc0008941.1_g000001 Rmu_sc0008941.1_g000002 Rmu_sc0008941.1_g000004 Rmu_sc0008941.1_g000005 Rmu_sc0008941.1_g000006 Rmu_sc0011173.1_g000001 Rmu_sc0011173.1_g000002 Rmu_sc0011173.1_g000008 Rmu_sc0011173.1_g000009 Rmu_sc0011173.1_g000013 Rmu_sc0011290.1_g000002 Rmu_sc0012908.1_g000002 Rmu_sc0013209.1_g000003 Rmu_sc0025395.1_g000001 Rmu_sc0025941.1_g000001 Rmu_sc0029089.1_g000001 Rmu_sc0036318.1_g000001 Rmu_sc0040213.1_g000001 Rmu_ssc0000092.1_g000038
rosa_roxburghii Rroxscaffold_3G00225010 Rroxscaffold_3G00225220 Rroxscaffold_3G00225300 Rroxscaffold_3G00225310 Rroxscaffold_3G00225390 Rroxscaffold_3G00225400 Rroxscaffold_3G00225470 Rroxscaffold_3G00225500 Rroxscaffold_3G00225570 Rroxscaffold_3G00225580 Rroxscaffold_3G00225600 Rroxscaffold_3G00225610 Rroxscaffold_3G00262350 Rroxscaffold_4G00313250
rosa_rugosa Rorug01G0145100.1 Rorug01G0145200.1 Rorug01G0145300.1 Rorug01G0145500.1 Rorug04G0161500 Rorug04G0161600 Rorug07G0007900 Rorug07G0008000 Rorug07G0008000 Rorug07G0273500 Rorug07G0273900 Rorug07G0274000 Rorug07G0274000 Rorug07G0274200.1 Rorug07G0274300 Rorug07G0274400 Rorug07G0293100 Rorug07G0293200 Rorug07G0293300 Rorug07G0293400 Rorug07G0293700 Rorug07G0293800 Rorug07G0294000 Rorug07G0294200 Rorug07G0294700 Rorug07G0294700 Rorug07G0295000 Rorug07G0295100 Rorug07G0295200 Rorug07G0295400 Rorug07G0295400 Rorug07G0296100 Rorug07G0297900 Rorug07G0297900 Rorug07G0298000 Rorug07G0298100
rosa_samantha Rh1DG165000 Rh1DG165100 Rh1DG165200 Rh1DG165600 Rh1DG165700 Rh1DG165800 Rh4DG221500 Rh7DG134800 Rh7DG134900 Rh7DG436900 Rh7DG437100 Rh7DG437300 Rh7DG437400 Rh7DG437500 Rh7DG437700 Rh7DG437800 Rh7DG438200 Rh7DG439200 Rh7DG439300 Rh7DG440300
rosa_wichuraiana Rw0G019880 Rw0G020650 Rw0G020670 Rw1G013620 Rw1G013630 Rw4G019180 Rw7G011360 Rw7G011370 Rw7G037220 Rw7G037240 Rw7G037260 Rw7G037270 Rw7G037280 Rw7G037300 Rw7G037380 Rw7G037390 Rw7G037560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 154
AccII CGCG 1 cut(s) 171
AciI CCGC 2 cut(s) 171, 430
AcuI CTGAAG 2 cut(s) 128, 281
AcyI GRCGYC 1 cut(s) 345
AfaI GTAC 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 154
AgeI ACCGGT 1 cut(s) 212
AgsI TTSAA 4 cut(s) 25, 118, 127, 224
AjnI CCWGG 1 cut(s) 147
AleI CACNNNNGTG 1 cut(s) 213
AluBI AGCT 2 cut(s) 160, 284
AluI AGCT 2 cut(s) 160, 284
Alw21I GWGCWC 2 cut(s) 162, 259
Alw26I GTCTC 3 cut(s) 173, 236, 397
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 415
AsiGI ACCGGT 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 113
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 273
AsuNHI GCTAGC 1 cut(s) 280
AvaII GGWCC 1 cut(s) 273
AxyI CCTNAGG 1 cut(s) 92
BanII GRGCYC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 2 cut(s) 162, 259
BbvI GCAGC 1 cut(s) 402
BccI CCATC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 149
BcoDI GTCTC 3 cut(s) 173, 236, 397
BfaI CTAG 2 cut(s) 281, 288
BfmI CTRYAG 1 cut(s) 163
BisI GCNGC 2 cut(s) 172, 416
BlsI GCNGC 2 cut(s) 173, 417
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 273
BmgT120I GGNCC 1 cut(s) 273
BmrFI CCNGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 352
BmtI GCTAGC 1 cut(s) 284
BpiI GAAGAC 1 cut(s) 231
BpuEI CTTGAG 2 cut(s) 218, 401
BsaHI GRCGYC 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 397
BsaJI CCNNGG 1 cut(s) 153
BsaWI WCCGGW 2 cut(s) 212, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse118I RCCGGY 1 cut(s) 212
Bse21I CCTNAGG 1 cut(s) 92
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 3 cut(s) 103, 367, 405
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 402
BseYI CCCAGC 1 cut(s) 174
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 1 cut(s) 152
BshTI ACCGGT 1 cut(s) 212
BsiHKAI GWGCWC 2 cut(s) 162, 259
BsiSI CCGG 2 cut(s) 213, 271
BslFI GGGAC 1 cut(s) 345
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 3 cut(s) 173, 236, 397
BsmFI GGGAC 1 cut(s) 345
BsnI GGCC 1 cut(s) 152
Bso31I GGTCTC 1 cut(s) 397
Bsp1286I GDGCHC 2 cut(s) 162, 259
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 2 cut(s) 171, 430
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 105
BspFNI CGCG 1 cut(s) 171
BspOI GCTAGC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 397
BsrDI GCAATG 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 153
BssNI GRCGYC 1 cut(s) 345
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 3 cut(s) 83, 230, 319
BstACI GRCGYC 1 cut(s) 345
BstC8I GCNNGC 2 cut(s) 282, 377
BstDEI CTNAG 1 cut(s) 92
BstDSI CCRYGG 1 cut(s) 153
BstF5I GGATG 3 cut(s) 103, 367, 405
BstFNI CGCG 1 cut(s) 171
BstHHI GCGC 1 cut(s) 171
BstMAI GTCTC 3 cut(s) 173, 236, 397
BstMWI GCNNNNNNNGC 4 cut(s) 17, 128, 166, 263
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 147
BstSFI CTRYAG 1 cut(s) 163
BstUI CGCG 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 402
BstV2I GAAGAC 1 cut(s) 231
Bsu36I CCTNAGG 1 cut(s) 92
BsuRI GGCC 1 cut(s) 152
BtgI CCRYGG 1 cut(s) 153
BtsCI GGATG 3 cut(s) 103, 367, 405
BtsI GCAGTG 1 cut(s) 425
BtsIMutI CAGTG 2 cut(s) 315, 425
Cac8I GCNNGC 2 cut(s) 282, 377
CfoI GCGC 1 cut(s) 171
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 273
CseI GACGC 1 cut(s) 353
Csp6I GTAC 1 cut(s) 203
CspAI ACCGGT 1 cut(s) 212
CspCI CAANNNNNGTGG 2 cut(s) 337, 372
CviAII CATG 2 cut(s) 154, 277
CviJI RGCY 8 cut(s) 122, 131, 152, 160, 174, 239, 266, 284
CviKI_1 RGCY 8 cut(s) 122, 131, 152, 160, 174, 239, 266, 284
CviQI GTAC 1 cut(s) 203
DdeI CTNAG 1 cut(s) 92
Ecl136II GAGCTC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 273
Eco53kI GAGCTC 1 cut(s) 160
Eco57I CTGAAG 2 cut(s) 128, 281
Eco81I CCTNAGG 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 2 cut(s) 157, 280
FaiI YATR 9 cut(s) 144, 155, 165, 188, 278, 309, 329, 413, 423
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 1 cut(s) 345
FatI CATG 2 cut(s) 153, 276
Fnu4HI GCNGC 2 cut(s) 172, 416
FokI GGATG 3 cut(s) 110, 374, 412
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 2 cut(s) 172, 416
FspBI CTAG 2 cut(s) 281, 288
GlaI GCGC 1 cut(s) 170
GluI GCNGC 2 cut(s) 172, 416
GsaI CCCAGC 1 cut(s) 178
HaeIII GGCC 1 cut(s) 152
HapII CCGG 2 cut(s) 213, 271
HgaI GACGC 1 cut(s) 353
HhaI GCGC 1 cut(s) 171
Hin1I GRCGYC 1 cut(s) 345
Hin1II CATG 2 cut(s) 157, 280
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 1 cut(s) 333
HpaII CCGG 2 cut(s) 213, 271
Hpy166II GTNNAC 1 cut(s) 86
Hpy188I TCNGA 3 cut(s) 34, 108, 261
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 1 cut(s) 86
HpyAV CCTTC 3 cut(s) 10, 256, 382
HpyCH4III ACNGT 3 cut(s) 83, 230, 319
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 1 cut(s) 70
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 128, 166, 263
HpyF3I CTNAG 1 cut(s) 92
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 1 cut(s) 345
Hsp92II CATG 2 cut(s) 157, 280
HspAI GCGC 1 cut(s) 169
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 9 cut(s) 69, 79, 134, 160, 161, 207, 226, 284, 427
Lsp1109I GCAGC 1 cut(s) 402
LweI GCATC 1 cut(s) 352
MaeI CTAG 2 cut(s) 281, 288
MaeII ACGT 1 cut(s) 36
MboII GAAGA 4 cut(s) 17, 37, 121, 236
MhlI GDGCHC 2 cut(s) 162, 259
MluCI AATT 3 cut(s) 189, 324, 349
MlyI GAGTC 1 cut(s) 327
MnlI CCTC 3 cut(s) 101, 190, 438
MroXI GAANNNNTTC 1 cut(s) 113
MseI TTAA 1 cut(s) 323
MslI CAYNNNNRTG 1 cut(s) 213
MspI CCGG 2 cut(s) 213, 271
MspR9I CCNGG 1 cut(s) 149
MvaI CCWGG 1 cut(s) 149
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 4 cut(s) 17, 128, 166, 263
NcoI CCATGG 1 cut(s) 153
NheI GCTAGC 1 cut(s) 280
NlaIII CATG 2 cut(s) 157, 280
OliI CACNNNNGTG 1 cut(s) 213
PdmI GAANNNNTTC 1 cut(s) 113
PflMI CCANNNNNTGG 1 cut(s) 154
PinAI ACCGGT 1 cut(s) 212
PkrI GCNGC 2 cut(s) 173, 417
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 147
PspFI CCCAGC 1 cut(s) 174
PspGI CCWGG 1 cut(s) 147
PspPI GGNCC 1 cut(s) 273
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
RseI CAYNNNNRTG 1 cut(s) 213
SacI GAGCTC 1 cut(s) 162
SaqAI TTAA 1 cut(s) 323
SatI GCNGC 2 cut(s) 172, 416
Sau96I GGNCC 1 cut(s) 273
SchI GAGTC 1 cut(s) 327
ScrFI CCNGG 1 cut(s) 149
SduI GDGCHC 2 cut(s) 162, 259
SetI ASST 5 cut(s) 39, 162, 201, 286, 455
SfaNI GCATC 1 cut(s) 352
SfcI CTRYAG 1 cut(s) 163
SgrAI CRCCGGYG 1 cut(s) 212
SinI GGWCC 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 213
SmlI CTYRAG 2 cut(s) 233, 380
SmoI CTYRAG 2 cut(s) 233, 380
Sse9I AATT 3 cut(s) 189, 324, 349
SsiI CCGC 2 cut(s) 171, 430
SspMI CTAG 2 cut(s) 281, 288
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 1 cut(s) 147
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 3 cut(s) 83, 230, 319
TaiI ACGT 1 cut(s) 39
TasI AATT 3 cut(s) 189, 324, 349
TauI GCSGC 1 cut(s) 174
Tru1I TTAA 1 cut(s) 323
Tru9I TTAA 1 cut(s) 323
TscAI CASTG 2 cut(s) 322, 432
TseI GCWGC 1 cut(s) 415
TspDTI ATGAA 2 cut(s) 29, 401
TspRI CASTG 2 cut(s) 322, 432
Van91I CCANNNNNTGG 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 273
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 2 cut(s) 281, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.