Rorug07G0294700

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000077
Physical Location & Seq
Forward (+)
28868870 .. 28871970
3101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0294700.1

Sequence Viewer

Length: 1146 bp
ATGAAGATGAAGCTTTTCCAGCTCTTTATCACTGCATCGATTCCAGTCTTGAAAACCCTATTGATTACTGCCCTTGGCTCATATCTTGCAACTGAACGCGTCAATATTCTGGGGGAAGATAGTAGGAAGCACTTAAACAGTCTTGTATTTTTCGTGTTCAATCCAGCCCTGGTTGGTTCCAGCCTTGCCCAGACCATAACATATCACAGTATGATTAAGCTGTGGTTCATGCCTGTGAACGTCCTCATGACCTTTATTGTTGGTTCAATCTTTGGATGGATACTCATCCTATTAACAAGAACTCCTCCACGTCTTCGAGGTCTTACTGTGGGTTGCTGTGCTGCTGGAAATTTAGGGAACATGCTCCTTATTATAATCCCAGCTGTTTGTGAAGAAAAAGGGAGTCCATTTGGAGCTCCTGATGTTTGTTATGCTTACGGATTGGCATATGCTTCACTTTCAATGGCGATCTCCGCTGTTTATATGTGGTCCTATGTTTATAGTATTGTGAGGATATCTTCAAACAGAGACACTCTTGATCAAGACACGATCCAATCTTTGGAGAGATCCTCCATCCCAAACCAAATCATGACACCTCCGGGCAAAATAATGAACCGTATAATGAAGGTGGTTAAAAAGCTCAATCTAGAAACGATCTTTTCCCCCTCAATAGTTGCAGCGATCGTTGGCTTTGTTATCGGAGTCATCCCTCCAGTTCGAAAAGTATTCATAGAAGATGGGGCTCCTCTACGGGTGATTAATGACACTGTTTCCTTGTTGGGAGGTGGAGCTATCCCGGCTGTCACTCTGATAATAGGAGGAAACCTCCTTAAAGGCCTGAGAGGGTCTGGGATACAGACTTCTCTCGTTATCGGCATCATCATTGTTCGTTATGTTGCCCTGCCTCTTGCAGGCATATTGATCGTTAAAGGGGCAATGAAATTTGGCTTAGTACACTCTGATCCATTGTATCTGTTTGTTCTTCTCCTTCAATTTGCACTCCCACCTGCAGTGAGCATGGCAACCGTCACTCAATTGTTCGGAGCAGGAGAGAAAGAGTGTTCGGTTATCATGCTGTGGACTTATGTTCTTGCTTCGGTAGCGCTTACTTTTTGGTCTGCCTTCTTCATGTGGCTTGTCGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PPR_3

Protein Analysis

381

Amino Acids

41.34

Weight (kDa)

9.49

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 12 - 372 1.7e-75 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000077)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53670
fragaria_vesca FvH4_1g12751 FvH4_1g13491 FvH4_1g13491 FvH4_1g16302 FvH4_1g16303 FvH4_1g29161 FvH4_1g29941 FvH4_2g02290 FvH4_2g05985 FvH4_2g15841 FvH4_2g18261 FvH4_2g22761 FvH4_2g22761 FvH4_2g22761 FvH4_3g13432 FvH4_3g14801 FvH4_3g28581 FvH4_3g30611 FvH4_3g30611 FvH4_3g30611 FvH4_3g32571 FvH4_3g32571 FvH4_3g32571 FvH4_3g33631 FvH4_3g36663 FvH4_3g36664 FvH4_4g00961 FvH4_4g17672 FvH4_5g13441 FvH4_5g30231 FvH4_5g39263 FvH4_6g06661 FvH4_6g06662 FvH4_6g40841 FvH4_7g00732 FvH4_7g11331 FvH4_7g12361
malus_domestica MD02G1100700.v1.1 MD02G1280000.v1.1 MD03G1045100.v1.1 MD04G1043300.v1.1 MD05G1061800.v1.1 MD05G1118300.v1.1 MD05G1334900.v1.1 MD08G1232100.v1.1 MD10G1202700.v1.1 MD11G1016600.v1.1 MD11G1271900.v1.1 MD15G1002900.v1.1 MD15G1059300.v1.1
prunus_persica Prupe.1G445900_v2.0.a1 Prupe.4G244000_v2.0.a1 Prupe.6G221400_v2.0.a1 Prupe.6G301400_v2.0.a1 Prupe.7G031600_v2.0.a1 Prupe.8G017100_v2.0.a1
pyrus_communis pycom01g08140 pycom01g19130 pycom02g09810 pycom03g12420 pycom05g09140 pycom05g22780 pycom06g17440 pycom07g04850 pycom07g08300 pycom08g09110 pycom08g10760 pycom09g15580 pycom09g18260 pycom09g18400 pycom11g07380 pycom11g20370 pycom12g01630 pycom12g11730 pycom13g21040 pycom14g00290 pycom14g10520 pycom15g16640 pycom15g18720 pycom15g24540 pycom15g26360 pycom16g08100 pycom16g09950 pycom16g11700 pycom16g19690 pycom17g20400
rosa_chinensis RchiOBHm_Chr1g0317481 RchiOBHm_Chr1g0322601 RchiOBHm_Chr1g0324761 RchiOBHm_Chr1g0335001 RchiOBHm_Chr1g0336961 RchiOBHm_Chr1g0345341 RchiOBHm_Chr1g0348501 RchiOBHm_Chr1g0352591 RchiOBHm_Chr1g0354901 RchiOBHm_Chr1g0365141 RchiOBHm_Chr1g0365511 RchiOBHm_Chr1g0368471 RchiOBHm_Chr1g0373471 RchiOBHm_Chr1g0373951 RchiOBHm_Chr1g0375621 RchiOBHm_Chr1g0378491 RchiOBHm_Chr1g0383431 RchiOBHm_Chr2g0086291 RchiOBHm_Chr2g0096681 RchiOBHm_Chr2g0117391 RchiOBHm_Chr2g0121511 RchiOBHm_Chr2g0128511 RchiOBHm_Chr2g0159591 RchiOBHm_Chr2g0173271 RchiOBHm_Chr3g0453771 RchiOBHm_Chr3g0462071 RchiOBHm_Chr3g0467151 RchiOBHm_Chr3g0468531 RchiOBHm_Chr3g0478981 RchiOBHm_Chr3g0488371 RchiOBHm_Chr3g0496001 RchiOBHm_Chr3g0496651 RchiOBHm_Chr4g0390941 RchiOBHm_Chr4g0431251 RchiOBHm_Chr4g0441691 RchiOBHm_Chr5g0001181 RchiOBHm_Chr5g0001671 RchiOBHm_Chr5g0021461 RchiOBHm_Chr5g0045101 RchiOBHm_Chr5g0045461 RchiOBHm_Chr5g0063421 RchiOBHm_Chr5g0068061 RchiOBHm_Chr5g0069541 RchiOBHm_Chr5g0073131 RchiOBHm_Chr5g0076631 RchiOBHm_Chr5g0079181 RchiOBHm_Chr5g0082051 RchiOBHm_Chr6g0248451 RchiOBHm_Chr6g0255561 RchiOBHm_Chr6g0266491 RchiOBHm_Chr6g0268111 RchiOBHm_Chr6g0304521 RchiOBHm_Chr6g0306511 RchiOBHm_Chr7g0181641 RchiOBHm_Chr7g0181791 RchiOBHm_Chr7g0188321 RchiOBHm_Chr7g0194951 RchiOBHm_Chr7g0195071 RchiOBHm_Chr7g0199671 RchiOBHm_Chr7g0204631 RchiOBHm_Chr7g0231771 RchiOBHm_Chr7g0231831 RchiOBHm_Chr7g0242511
rosa_laevigata RLG00000015596 RLG00000021778 RLG00000028187
rosa_multiflora Rmu_co8285397.1_g000001 Rmu_co8301931.1_g000001 Rmu_co8376351.1_g000001 Rmu_co8412043.1_g000001 Rmu_sc0000079.1_g000006 Rmu_sc0000160.1_g000007 Rmu_sc0000208.1_g000006 Rmu_sc0000258.1_g000016 Rmu_sc0000295.1_g000008 Rmu_sc0000302.1_g000025 Rmu_sc0000423.1_g000039 Rmu_sc0000441.1_g000040 Rmu_sc0000538.1_g000074 Rmu_sc0000603.1_g000019 Rmu_sc0000611.1_g000018 Rmu_sc0000729.1_g000002 Rmu_sc0000837.1_g000044 Rmu_sc0000903.1_g000015 Rmu_sc0000924.1_g000029 Rmu_sc0001173.1_g000021 Rmu_sc0001289.1_g000004 Rmu_sc0001347.1_g000005 Rmu_sc0001464.1_g000020 Rmu_sc0001618.1_g000015 Rmu_sc0002014.1_g000002 Rmu_sc0002047.1_g000002 Rmu_sc0002160.1_g000029 Rmu_sc0002310.1_g000011 Rmu_sc0002416.1_g000002 Rmu_sc0002417.1_g000008 Rmu_sc0002445.1_g000008 Rmu_sc0002691.1_g000026 Rmu_sc0002700.1_g000021 Rmu_sc0002748.1_g000032 Rmu_sc0002792.1_g000048 Rmu_sc0002831.1_g000012 Rmu_sc0002928.1_g000025 Rmu_sc0002956.1_g000001 Rmu_sc0003170.1_g000039 Rmu_sc0003232.1_g000024 Rmu_sc0003391.1_g000014 Rmu_sc0003600.1_g000009 Rmu_sc0003630.1_g000064 Rmu_sc0003633.1_g000035 Rmu_sc0003802.1_g000001 Rmu_sc0003881.1_g000001 Rmu_sc0003989.1_g000001 Rmu_sc0004208.1_g000021 Rmu_sc0004815.1_g000004 Rmu_sc0004821.1_g000002 Rmu_sc0005237.1_g000004 Rmu_sc0005638.1_g000006 Rmu_sc0005996.1_g000004 Rmu_sc0006604.1_g000005 Rmu_sc0007023.1_g000007 Rmu_sc0007084.1_g000004 Rmu_sc0007239.1_g000001 Rmu_sc0007338.1_g000010 Rmu_sc0007398.1_g000004 Rmu_sc0007630.1_g000001 Rmu_sc0008067.1_g000001 Rmu_sc0008114.1_g000001 Rmu_sc0008623.1_g000008 Rmu_sc0009777.1_g000010 Rmu_sc0012719.1_g000001 Rmu_sc0014173.1_g000001 Rmu_sc0015338.1_g000002 Rmu_sc0015804.1_g000002 Rmu_sc0023779.1_g000001 Rmu_sc0024140.1_g000001 Rmu_sc0024833.1_g000006 Rmu_ssc0000087.1_g000013 Rmu_ssc0000400.1_g000088 Rmu_ssc0000400.1_g000089
rosa_roxburghii Rroxscaffold_175G00432540 Rroxscaffold_1G00003260 Rroxscaffold_1G00032490 Rroxscaffold_1G00035100 Rroxscaffold_1G00051960 Rroxscaffold_1G00056120 Rroxscaffold_2G00091260 Rroxscaffold_2G00097580 Rroxscaffold_2G00100910 Rroxscaffold_2G00101000 Rroxscaffold_2G00104370 Rroxscaffold_2G00154020 Rroxscaffold_3G00219010 Rroxscaffold_3G00241360 Rroxscaffold_3G00265190 Rroxscaffold_4G00328620 Rroxscaffold_5G00338660 Rroxscaffold_5G00339430 Rroxscaffold_5G00346490 Rroxscaffold_5G00360740 Rroxscaffold_5G00373490 Rroxscaffold_5G00373950 Rroxscaffold_5G00379290 Rroxscaffold_6G00390000 Rroxscaffold_6G00406560 Rroxscaffold_7G00163660 Rroxscaffold_7G00172220 Rroxscaffold_7G00182760 Rroxscaffold_7G00217680 Rroxscaffold_7G00217910
rosa_rugosa Rorug03G0299400 Rorug04G0048800 Rorug05G0503600 Rorug07G0090800 Rorug07G0090900 Rorug07G0294700
rosa_samantha Rh3BG243300 Rh4BG398100
rosa_wichuraiana Rw0G005950 Rw0G023070 Rw1G003680 Rw1G004130 Rw1G007910 Rw1G013940 Rw1G018710 Rw1G022140 Rw1G031170 Rw1G041420 Rw2G024950 Rw2G045000 Rw2G049360 Rw3G007370 Rw3G009120 Rw3G011780 Rw3G027830 Rw4G001510 Rw4G003110 Rw4G008370 Rw4G022100 Rw4G035490 Rw5G001650 Rw5G002000 Rw5G002590 Rw5G017930 Rw5G020530 Rw5G024010 Rw5G024710 Rw5G025620 Rw5G027980 Rw5G030200 Rw5G036530 Rw5G044700 Rw6G006860 Rw6G018940 Rw6G019810 Rw6G029740 Rw7G009360 Rw7G017280 Rw7G017540 Rw7G020090 Rw7G022500 Rw7G031420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AarI CACCTGC 1 cut(s) 1015
Acc36I ACCTGC 1 cut(s) 1015
AccB7I CCANNNNNTGG 1 cut(s) 559
AccII CGCG 1 cut(s) 99
AciI CCGC 1 cut(s) 474
AclWI GGATC 3 cut(s) 544, 561, 956
AcsI RAATTY 2 cut(s) 349, 941
AfaI GTAC 1 cut(s) 954
AfeI AGCGCT 1 cut(s) 1104
AfiI CCNNNNNNNGG 2 cut(s) 559, 911
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 6 cut(s) 52, 160, 267, 462, 522, 992
AjiI CACGTC 1 cut(s) 311
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 7 cut(s) 13, 22, 220, 383, 416, 640, 791
AluI AGCT 7 cut(s) 13, 22, 220, 383, 416, 640, 791
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 1 cut(s) 522
AlwI GGATC 3 cut(s) 544, 561, 956
Aor51HI AGCGCT 1 cut(s) 1104
AoxI GGCC 1 cut(s) 835
ApeKI GCWGC 2 cut(s) 341, 677
ApoI RAATTY 2 cut(s) 349, 941
AseI ATTAAT 1 cut(s) 759
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 1105
AspS9I GGNCC 1 cut(s) 489
AsuC2I CCSGG 2 cut(s) 600, 797
AsuHPI GGTGA 1 cut(s) 766
AsuII TTCGAA 1 cut(s) 718
AvaII GGWCC 1 cut(s) 489
BanII GRGCYC 2 cut(s) 418, 745
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 1 cut(s) 418
BbvI GCAGC 2 cut(s) 328, 689
BccI CCATC 3 cut(s) 270, 581, 731
BcgI CGANNNNNNTGC 2 cut(s) 904, 938
BciT130I CCWGG 1 cut(s) 170
BciVI GTATCC 2 cut(s) 273, 846
BclI TGATCA 1 cut(s) 538
BcnI CCSGG 2 cut(s) 600, 797
BcoDI GTCTC 1 cut(s) 522
BfaI CTAG 1 cut(s) 647
BfmI CTRYAG 1 cut(s) 1008
BfoI RGCGCY 1 cut(s) 1106
BfuAI ACCTGC 1 cut(s) 1015
BfuI GTATCC 2 cut(s) 273, 846
BisI GCNGC 2 cut(s) 342, 678
BlsI GCNGC 2 cut(s) 343, 679
Bme1390I CCNGG 3 cut(s) 170, 600, 797
Bme18I GGWCC 1 cut(s) 489
BmgBI CACGTC 1 cut(s) 311
BmgT120I GGNCC 1 cut(s) 489
BmiI GGNNCC 2 cut(s) 178, 744
BmrFI CCNGG 3 cut(s) 170, 600, 797
BmsI GCATC 2 cut(s) 44, 885
BpiI GAAGAC 1 cut(s) 305
BplI GAGNNNNNCTC 4 cut(s) 554, 586, 810, 842
BpmI CTGGAG 1 cut(s) 696
Bpu14I TTCGAA 1 cut(s) 718
BpuMI CCSGG 2 cut(s) 600, 797
Bsa29I ATCGAT 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 73, 168
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 2 cut(s) 559, 911
Bse1I ACTGG 2 cut(s) 44, 713
Bse3DI GCAATG 1 cut(s) 942
Bse8I GATNNNNATC 1 cut(s) 284
BseBI CCWGG 1 cut(s) 170
BseCI ATCGAT 1 cut(s) 38
BseDI CCNNGG 2 cut(s) 73, 168
BseGI GGATG 4 cut(s) 281, 285, 573, 705
BseJI GATNNNNATC 1 cut(s) 284
BseLI CCNNNNNNNGG 2 cut(s) 559, 911
BseMI GCAATG 1 cut(s) 942
BseMII CTCAG 1 cut(s) 830
BseNI ACTGG 2 cut(s) 44, 713
BseRI GAGGAG 2 cut(s) 294, 735
BseXI GCAGC 2 cut(s) 328, 689
BseYI CCCAGC 1 cut(s) 379
Bsh1236I CGCG 1 cut(s) 99
Bsh1285I CGRYCG 1 cut(s) 684
BshFI GGCC 1 cut(s) 837
BshVI ATCGAT 1 cut(s) 38
BsiEI CGRYCG 1 cut(s) 684
BsiHKAI GWGCWC 1 cut(s) 418
BsiSI CCGG 2 cut(s) 599, 797
BslI CCNNNNNNNGG 2 cut(s) 559, 911
BsmAI GTCTC 1 cut(s) 522
BsnI GGCC 1 cut(s) 837
Bsp119I TTCGAA 1 cut(s) 718
Bsp1286I GDGCHC 2 cut(s) 418, 745
Bsp143I GATC 8 cut(s) 468, 538, 549, 566, 654, 681, 921, 961
BspACI CCGC 1 cut(s) 474
BspANI GGCC 1 cut(s) 837
BspCNI CTCAG 1 cut(s) 831
BspDI ATCGAT 1 cut(s) 38
BspFNI CGCG 1 cut(s) 99
BspHI TCATGA 2 cut(s) 246, 588
BspLI GGNNCC 2 cut(s) 178, 744
BspMAI CTGCAG 1 cut(s) 1012
BspMI ACCTGC 1 cut(s) 1015
BspPI GGATC 3 cut(s) 544, 561, 956
BspT104I TTCGAA 1 cut(s) 718
BsrDI GCAATG 1 cut(s) 942
BsrI ACTGG 2 cut(s) 44, 713
BssECI CCNNGG 2 cut(s) 73, 168
BssMI GATC 8 cut(s) 468, 538, 549, 566, 654, 681, 921, 961
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 6 cut(s) 140, 209, 328, 617, 769, 1027
BstBI TTCGAA 1 cut(s) 718
BstC8I GCNNGC 1 cut(s) 913
BstDEI CTNAG 2 cut(s) 839, 949
BstENI CCTNNNNNAGG 1 cut(s) 909
BstF5I GGATG 4 cut(s) 281, 285, 573, 705
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 1106
BstHHI GCGC 1 cut(s) 1105
BstKTI GATC 8 cut(s) 471, 541, 552, 569, 657, 684, 924, 964
BstMAI GTCTC 1 cut(s) 522
BstMBI GATC 8 cut(s) 468, 538, 549, 566, 654, 681, 921, 961
BstMCI CGRYCG 1 cut(s) 684
BstMWI GCNNNNNNNGC 4 cut(s) 19, 473, 797, 1100
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 3 cut(s) 168, 598, 795
BstSFI CTRYAG 1 cut(s) 1008
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 328, 689
BstV2I GAAGAC 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 566
BstYI RGATCY 1 cut(s) 566
Bsu15I ATCGAT 1 cut(s) 38
BsuI GTATCC 2 cut(s) 273, 846
BsuRI GGCC 1 cut(s) 837
BsuTUI ATCGAT 1 cut(s) 38
BtrI CACGTC 1 cut(s) 311
BtsCI GGATG 4 cut(s) 281, 285, 573, 705
BtsI GCAGTG 2 cut(s) 30, 1017
BtsIMutI CAGTG 3 cut(s) 30, 765, 1017
BveI ACCTGC 1 cut(s) 1015
Cac8I GCNNGC 1 cut(s) 913
CciI TCATGA 2 cut(s) 246, 588
CfoI GCGC 1 cut(s) 1105
Cfr13I GGNCC 1 cut(s) 489
ClaI ATCGAT 1 cut(s) 38
CseI GACGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 953
CviAII CATG 7 cut(s) 229, 247, 361, 589, 1018, 1072, 1129
CviQI GTAC 1 cut(s) 953
DdeI CTNAG 2 cut(s) 839, 949
DpnI GATC 8 cut(s) 470, 540, 551, 568, 656, 683, 923, 963
DpnII GATC 8 cut(s) 468, 538, 549, 566, 654, 681, 921, 961
Ecl136II GAGCTC 1 cut(s) 416
Eco130I CCWWGG 1 cut(s) 73
Eco147I AGGCCT 1 cut(s) 837
Eco24I GRGCYC 2 cut(s) 418, 745
Eco32I GATATC 1 cut(s) 516
Eco47I GGWCC 1 cut(s) 489
Eco47III AGCGCT 1 cut(s) 1104
Eco53kI GAGCTC 1 cut(s) 416
EcoICRI GAGCTC 1 cut(s) 416
EcoNI CCTNNNNNAGG 1 cut(s) 909
EcoRII CCWGG 1 cut(s) 168
EcoRV GATATC 1 cut(s) 516
EcoT14I CCWWGG 1 cut(s) 73
EcoT38I GRGCYC 2 cut(s) 418, 745
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 7 cut(s) 232, 250, 364, 592, 1021, 1075, 1132
FatI CATG 7 cut(s) 228, 246, 360, 588, 1017, 1071, 1128
FauNDI CATATG 1 cut(s) 448
FbaI TGATCA 1 cut(s) 538
Fnu4HI GCNGC 2 cut(s) 342, 678
FokI GGATG 4 cut(s) 272, 288, 560, 692
FriOI GRGCYC 2 cut(s) 418, 745
Fsp4HI GCNGC 2 cut(s) 342, 678
FspBI CTAG 1 cut(s) 647
GlaI GCGC 1 cut(s) 1104
GluI GCNGC 2 cut(s) 342, 678
GsaI CCCAGC 1 cut(s) 383
GsuI CTGGAG 1 cut(s) 696
HaeII RGCGCY 1 cut(s) 1106
HaeIII GGCC 1 cut(s) 837
HapII CCGG 2 cut(s) 599, 797
HgaI GACGC 1 cut(s) 88
HhaI GCGC 1 cut(s) 1105
Hin1II CATG 7 cut(s) 232, 250, 364, 592, 1021, 1075, 1132
Hin6I GCGC 1 cut(s) 1103
HinP1I GCGC 1 cut(s) 1103
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 3 cut(s) 40, 403, 702
HpaII CCGG 2 cut(s) 599, 797
HphI GGTGA 1 cut(s) 766
Hpy166II GTNNAC 3 cut(s) 238, 955, 1080
Hpy188I TCNGA 4 cut(s) 701, 810, 961, 1043
Hpy188III TCNNGA 7 cut(s) 49, 247, 419, 536, 542, 589, 647
Hpy8I GTNNAC 3 cut(s) 238, 955, 1080
HpyAV CCTTC 3 cut(s) 619, 998, 1132
HpyCH4III ACNGT 6 cut(s) 140, 209, 328, 617, 769, 1027
HpyCH4IV ACGT 2 cut(s) 240, 310
HpyCH4V TGCA 6 cut(s) 35, 89, 677, 911, 998, 1010
HpyF10VI GCNNNNNNNGC 4 cut(s) 19, 473, 797, 1100
HpyF3I CTNAG 2 cut(s) 839, 949
HpySE526I ACGT 2 cut(s) 240, 310
Hsp92II CATG 7 cut(s) 232, 250, 364, 592, 1021, 1075, 1132
HspAI GCGC 1 cut(s) 1103
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 8 cut(s) 468, 538, 549, 566, 654, 681, 921, 961
LmnI GCTCC 6 cut(s) 369, 413, 421, 748, 788, 1043
Lsp1109I GCAGC 2 cut(s) 328, 689
LweI GCATC 2 cut(s) 44, 885
MaeI CTAG 1 cut(s) 647
MaeII ACGT 2 cut(s) 240, 310
MaeIII GTNAC 2 cut(s) 802, 1027
MalI GATC 8 cut(s) 470, 540, 551, 568, 656, 683, 923, 963
MboI GATC 8 cut(s) 468, 538, 549, 566, 654, 681, 921, 961
MboII GAAGA 8 cut(s) 16, 128, 305, 404, 510, 746, 974, 1117
MfeI CAATTG 1 cut(s) 1034
MflI RGATCY 1 cut(s) 566
MhlI GDGCHC 2 cut(s) 418, 745
MluCI AATT 4 cut(s) 349, 941, 992, 1034
MluI ACGCGT 1 cut(s) 97
MlyI GAGTC 2 cut(s) 412, 711
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 7 cut(s) 134, 216, 293, 633, 759, 831, 927
MslI CAYNNNNRTG 1 cut(s) 233
MspA1I CMGCKG 2 cut(s) 383, 476
MspI CCGG 2 cut(s) 599, 797
MspR9I CCNGG 3 cut(s) 170, 600, 797
MunI CAATTG 1 cut(s) 1034
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 4 cut(s) 19, 473, 797, 1100
NciI CCSGG 2 cut(s) 600, 797
NdeI CATATG 1 cut(s) 448
NdeII GATC 8 cut(s) 468, 538, 549, 566, 654, 681, 921, 961
NlaIII CATG 7 cut(s) 232, 250, 364, 592, 1021, 1075, 1132
NlaIV GGNNCC 2 cut(s) 178, 744
NmuCI GTSAC 2 cut(s) 802, 1027
NspI RCATGY 1 cut(s) 364
NspV TTCGAA 1 cut(s) 718
PagI TCATGA 2 cut(s) 246, 588
PaqCI CACCTGC 1 cut(s) 1015
PceI AGGCCT 1 cut(s) 837
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 1 cut(s) 40
PflMI CCANNNNNTGG 1 cut(s) 559
PkrI GCNGC 2 cut(s) 343, 679
Ple19I CGATCG 1 cut(s) 684
PleI GAGTC 2 cut(s) 411, 710
PpsI GAGTC 2 cut(s) 411, 710
PshBI ATTAAT 1 cut(s) 759
PsiI TTATAA 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 168
PspFI CCCAGC 1 cut(s) 379
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 2 cut(s) 178, 744
PspPI GGNCC 1 cut(s) 489
PstI CTGCAG 1 cut(s) 1012
PsuI RGATCY 1 cut(s) 566
PvuI CGATCG 1 cut(s) 684
PvuII CAGCTG 1 cut(s) 383
RsaI GTAC 1 cut(s) 954
RsaNI GTAC 1 cut(s) 953
RseI CAYNNNNRTG 1 cut(s) 233
SacI GAGCTC 1 cut(s) 418
SaqAI TTAA 7 cut(s) 134, 216, 293, 633, 759, 831, 927
SatI GCNGC 2 cut(s) 342, 678
Sau3AI GATC 8 cut(s) 468, 538, 549, 566, 654, 681, 921, 961
Sau96I GGNCC 1 cut(s) 489
SchI GAGTC 2 cut(s) 412, 711
ScrFI CCNGG 3 cut(s) 170, 600, 797
SduI GDGCHC 2 cut(s) 418, 745
SfaNI GCATC 2 cut(s) 44, 885
SfcI CTRYAG 1 cut(s) 1008
SfuI TTCGAA 1 cut(s) 718
SinI GGWCC 1 cut(s) 489
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 4 cut(s) 349, 941, 992, 1034
SseBI AGGCCT 1 cut(s) 837
SsiI CCGC 1 cut(s) 474
SspI AATATT 1 cut(s) 106
SspMI CTAG 1 cut(s) 647
SstI GAGCTC 1 cut(s) 418
StuI AGGCCT 1 cut(s) 837
StyD4I CCNGG 3 cut(s) 168, 598, 795
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 6 cut(s) 140, 209, 328, 617, 769, 1027
TaiI ACGT 2 cut(s) 243, 313
TaqI TCGA 3 cut(s) 38, 316, 718
TasI AATT 4 cut(s) 349, 941, 992, 1034
TatI WGTACW 1 cut(s) 952
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 7 cut(s) 134, 216, 293, 633, 759, 831, 927
Tru9I TTAA 7 cut(s) 134, 216, 293, 633, 759, 831, 927
TscAI CASTG 3 cut(s) 37, 772, 1017
TseFI GTSAC 2 cut(s) 802, 1027
TseI GCWGC 2 cut(s) 341, 677
Tsp45I GTSAC 2 cut(s) 802, 1027
TspDTI ATGAA 8 cut(s) 17, 23, 217, 626, 638, 718, 953, 1117
TspGWI ACGGA 1 cut(s) 453
TspRI CASTG 3 cut(s) 37, 772, 1017
Van91I CCANNNNNTGG 1 cut(s) 559
VpaK11BI GGWCC 1 cut(s) 489
VspI ATTAAT 1 cut(s) 759
XagI CCTNNNNNAGG 1 cut(s) 909
XapI RAATTY 2 cut(s) 349, 941
XbaI TCTAGA 1 cut(s) 646
XceI RCATGY 1 cut(s) 364
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.