gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 555 |
| AclWI | GGATC | 2 cut(s) | 432, 502 |
| AcoI | YGGCCR | 1 cut(s) | 60 |
| AcsI | RAATTY | 8 cut(s) | 19, 338, 724, 742, 882, 1111, 1270, 1354 |
| AcuI | CTGAAG | 2 cut(s) | 9, 381 |
| AdeI | CACNNNGTG | 1 cut(s) | 602 |
| AfaI | GTAC | 5 cut(s) | 409, 924, 957, 996, 1285 |
| AluBI | AGCT | 5 cut(s) | 197, 359, 496, 617, 832 |
| AluI | AGCT | 5 cut(s) | 197, 359, 496, 617, 832 |
| Alw21I | GWGCWC | 2 cut(s) | 191, 1158 |
| Alw26I | GTCTC | 1 cut(s) | 384 |
| AlwI | GGATC | 2 cut(s) | 432, 502 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 32 |
| AoxI | GGCC | 2 cut(s) | 60, 859 |
| ApeKI | GCWGC | 4 cut(s) | 5, 308, 449, 493 |
| ApoI | RAATTY | 8 cut(s) | 19, 338, 724, 742, 882, 1111, 1270, 1354 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 40, 72 |
| AseI | ATTAAT | 1 cut(s) | 177 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 22, 689 |
| AspS9I | GGNCC | 1 cut(s) | 859 |
| AsuHPI | GGTGA | 2 cut(s) | 497, 1055 |
| BalI | TGGCCA | 1 cut(s) | 62 |
| BbsI | GAAGAC | 1 cut(s) | 53 |
| Bbv12I | GWGCWC | 2 cut(s) | 191, 1158 |
| BbvI | GCAGC | 3 cut(s) | 295, 436, 505 |
| BccI | CCATC | 2 cut(s) | 213, 394 |
| BceAI | ACGGC | 1 cut(s) | 673 |
| BclI | TGATCA | 1 cut(s) | 181 |
| BcoDI | GTCTC | 1 cut(s) | 384 |
| BfaI | CTAG | 4 cut(s) | 254, 497, 786, 1080 |
| BfmI | CTRYAG | 1 cut(s) | 450 |
| BisI | GCNGC | 4 cut(s) | 6, 309, 450, 494 |
| BlsI | GCNGC | 4 cut(s) | 7, 310, 451, 495 |
| BmcAI | AGTACT | 1 cut(s) | 924 |
| BmgT120I | GGNCC | 1 cut(s) | 859 |
| BmiI | GGNNCC | 2 cut(s) | 415, 715 |
| BmrI | ACTGGG | 1 cut(s) | 583 |
| BmsI | GCATC | 2 cut(s) | 436, 977 |
| BmuI | ACTGGG | 1 cut(s) | 583 |
| BpiI | GAAGAC | 1 cut(s) | 53 |
| BpuEI | CTTGAG | 1 cut(s) | 546 |
| BsaWI | WCCGGW | 1 cut(s) | 716 |
| Bse1I | ACTGG | 4 cut(s) | 12, 415, 578, 988 |
| BseGI | GGATG | 3 cut(s) | 66, 583, 992 |
| BseMII | CTCAG | 1 cut(s) | 1005 |
| BseNI | ACTGG | 4 cut(s) | 12, 415, 578, 988 |
| BseRI | GAGGAG | 1 cut(s) | 297 |
| BseXI | GCAGC | 3 cut(s) | 295, 436, 505 |
| BsgI | GTGCAG | 1 cut(s) | 686 |
| BshFI | GGCC | 2 cut(s) | 62, 861 |
| BsiHKAI | GWGCWC | 2 cut(s) | 191, 1158 |
| BsiSI | CCGG | 1 cut(s) | 717 |
| BslFI | GGGAC | 1 cut(s) | 1090 |
| BsmAI | GTCTC | 1 cut(s) | 384 |
| BsmFI | GGGAC | 1 cut(s) | 1090 |
| BsmI | GAATGC | 1 cut(s) | 328 |
| BsnI | GGCC | 2 cut(s) | 62, 861 |
| Bsp1286I | GDGCHC | 2 cut(s) | 191, 1158 |
| Bsp143I | GATC | 3 cut(s) | 181, 424, 507 |
| BspANI | GGCC | 2 cut(s) | 62, 861 |
| BspCNI | CTCAG | 1 cut(s) | 1004 |
| BspHI | TCATGA | 1 cut(s) | 504 |
| BspLI | GGNNCC | 2 cut(s) | 415, 715 |
| BspMAI | CTGCAG | 1 cut(s) | 454 |
| BspPI | GGATC | 2 cut(s) | 432, 502 |
| BsrI | ACTGG | 4 cut(s) | 12, 415, 578, 988 |
| BssMI | GATC | 3 cut(s) | 181, 424, 507 |
| Bst4CI | ACNGT | 4 cut(s) | 246, 878, 1214, 1265 |
| Bst6I | CTCTTC | 1 cut(s) | 896 |
| BstDEI | CTNAG | 3 cut(s) | 828, 855, 991 |
| BstF5I | GGATG | 3 cut(s) | 66, 583, 992 |
| BstKTI | GATC | 3 cut(s) | 184, 427, 510 |
| BstMAI | GTCTC | 1 cut(s) | 384 |
| BstMBI | GATC | 3 cut(s) | 181, 424, 507 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 203, 1162, 1226 |
| BstSFI | CTRYAG | 1 cut(s) | 450 |
| BstV1I | GCAGC | 3 cut(s) | 295, 436, 505 |
| BstV2I | GAAGAC | 1 cut(s) | 53 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 238 |
| BsuRI | GGCC | 2 cut(s) | 62, 861 |
| BtsCI | GGATG | 3 cut(s) | 66, 583, 992 |
| BtsIMutI | CAGTG | 3 cut(s) | 19, 33, 242 |
| CaiI | CAGNNNCTG | 1 cut(s) | 32 |
| CciI | TCATGA | 1 cut(s) | 504 |
| Cfr13I | GGNCC | 1 cut(s) | 859 |
| Csp6I | GTAC | 5 cut(s) | 408, 923, 956, 995, 1284 |
| CviAII | CATG | 3 cut(s) | 265, 299, 505 |
| CviQI | GTAC | 5 cut(s) | 408, 923, 956, 995, 1284 |
| DdeI | CTNAG | 3 cut(s) | 828, 855, 991 |
| DpnI | GATC | 3 cut(s) | 183, 426, 509 |
| DpnII | GATC | 3 cut(s) | 181, 424, 507 |
| DraI | TTTAAA | 5 cut(s) | 867, 1014, 1116, 1140, 1255 |
| DraIII | CACNNNGTG | 1 cut(s) | 602 |
| EaeI | YGGCCR | 1 cut(s) | 60 |
| Eam1104I | CTCTTC | 1 cut(s) | 896 |
| EarI | CTCTTC | 1 cut(s) | 896 |
| Eco32I | GATATC | 1 cut(s) | 655 |
| Eco57I | CTGAAG | 2 cut(s) | 9, 381 |
| EcoRI | GAATTC | 3 cut(s) | 724, 742, 1354 |
| EcoRV | GATATC | 1 cut(s) | 655 |
| FaeI | CATG | 3 cut(s) | 268, 302, 508 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1200, 1232 |
| FaqI | GGGAC | 1 cut(s) | 1090 |
| FatI | CATG | 3 cut(s) | 264, 298, 504 |
| FbaI | TGATCA | 1 cut(s) | 181 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 309, 450, 494 |
| FokI | GGATG | 3 cut(s) | 53, 590, 999 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 309, 450, 494 |
| FspBI | CTAG | 4 cut(s) | 254, 497, 786, 1080 |
| GluI | GCNGC | 4 cut(s) | 6, 309, 450, 494 |
| HaeIII | GGCC | 2 cut(s) | 62, 861 |
| HapII | CCGG | 1 cut(s) | 717 |
| Hin1II | CATG | 3 cut(s) | 268, 302, 508 |
| HincII | GTYRAC | 4 cut(s) | 583, 778, 874, 1122 |
| HindII | GTYRAC | 4 cut(s) | 583, 778, 874, 1122 |
| HindIII | AAGCTT | 1 cut(s) | 830 |
| HinfI | GANTC | 8 cut(s) | 49, 130, 347, 459, 779, 938, 965, 1331 |
| HpaI | GTTAAC | 1 cut(s) | 1122 |
| HpaII | CCGG | 1 cut(s) | 717 |
| HphI | GGTGA | 2 cut(s) | 497, 1055 |
| Hpy166II | GTNNAC | 4 cut(s) | 583, 778, 874, 1122 |
| Hpy188I | TCNGA | 3 cut(s) | 135, 186, 321 |
| Hpy188III | TCNNGA | 4 cut(s) | 254, 344, 505, 563 |
| Hpy8I | GTNNAC | 4 cut(s) | 583, 778, 874, 1122 |
| HpyAV | CCTTC | 3 cut(s) | 102, 1067, 1301 |
| HpyCH4III | ACNGT | 4 cut(s) | 246, 878, 1214, 1265 |
| HpyCH4V | TGCA | 7 cut(s) | 35, 452, 596, 607, 667, 849, 1088 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 203, 1162, 1226 |
| HpyF3I | CTNAG | 3 cut(s) | 828, 855, 991 |
| Hsp92II | CATG | 3 cut(s) | 268, 302, 508 |
| Ksp22I | TGATCA | 1 cut(s) | 181 |
| KspAI | GTTAAC | 1 cut(s) | 1122 |
| Kzo9I | GATC | 3 cut(s) | 181, 424, 507 |
| LmnI | GCTCC | 1 cut(s) | 419 |
| Lsp1109I | GCAGC | 3 cut(s) | 295, 436, 505 |
| LweI | GCATC | 2 cut(s) | 436, 977 |
| MaeI | CTAG | 4 cut(s) | 254, 497, 786, 1080 |
| MalI | GATC | 3 cut(s) | 183, 426, 509 |
| MboI | GATC | 3 cut(s) | 181, 424, 507 |
| MboII | GAAGA | 9 cut(s) | 15, 58, 346, 448, 556, 623, 694, 913, 1188 |
| MfeI | CAATTG | 3 cut(s) | 153, 539, 587 |
| MhlI | GDGCHC | 2 cut(s) | 191, 1158 |
| MlsI | TGGCCA | 1 cut(s) | 62 |
| MluNI | TGGCCA | 1 cut(s) | 62 |
| MlyI | GAGTC | 5 cut(s) | 43, 124, 453, 773, 1340 |
| MnlI | CCTC | 8 cut(s) | 86, 275, 278, 397, 521, 643, 695, 1204 |
| Mox20I | TGGCCA | 1 cut(s) | 62 |
| MroXI | GAANNNNTTC | 2 cut(s) | 22, 689 |
| MscI | TGGCCA | 1 cut(s) | 62 |
| Msp20I | TGGCCA | 1 cut(s) | 62 |
| MspI | CCGG | 1 cut(s) | 717 |
| MunI | CAATTG | 3 cut(s) | 153, 539, 587 |
| Mva1269I | GAATGC | 1 cut(s) | 328 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 203, 1162, 1226 |
| NdeII | GATC | 3 cut(s) | 181, 424, 507 |
| NlaIII | CATG | 3 cut(s) | 268, 302, 508 |
| NlaIV | GGNNCC | 2 cut(s) | 415, 715 |
| PagI | TCATGA | 1 cut(s) | 504 |
| PctI | GAATGC | 1 cut(s) | 328 |
| PdmI | GAANNNNTTC | 2 cut(s) | 22, 689 |
| PfeI | GAWTC | 3 cut(s) | 347, 938, 965 |
| PkrI | GCNGC | 4 cut(s) | 7, 310, 451, 495 |
| PleI | GAGTC | 5 cut(s) | 43, 124, 453, 773, 1339 |
| PpsI | GAGTC | 5 cut(s) | 43, 124, 453, 773, 1339 |
| PshBI | ATTAAT | 1 cut(s) | 177 |
| PsiI | TTATAA | 1 cut(s) | 555 |
| PspN4I | GGNNCC | 2 cut(s) | 415, 715 |
| PspPI | GGNCC | 1 cut(s) | 859 |
| PstI | CTGCAG | 1 cut(s) | 454 |
| PstNI | CAGNNNCTG | 1 cut(s) | 32 |
| RsaI | GTAC | 5 cut(s) | 409, 924, 957, 996, 1285 |
| RsaNI | GTAC | 5 cut(s) | 408, 923, 956, 995, 1284 |
| SatI | GCNGC | 4 cut(s) | 6, 309, 450, 494 |
| Sau3AI | GATC | 3 cut(s) | 181, 424, 507 |
| Sau96I | GGNCC | 1 cut(s) | 859 |
| ScaI | AGTACT | 1 cut(s) | 924 |
| SchI | GAGTC | 5 cut(s) | 43, 124, 453, 773, 1340 |
| SduI | GDGCHC | 2 cut(s) | 191, 1158 |
| SfaNI | GCATC | 2 cut(s) | 436, 977 |
| SfcI | CTRYAG | 1 cut(s) | 450 |
| SmlI | CTYRAG | 1 cut(s) | 561 |
| SmoI | CTYRAG | 1 cut(s) | 561 |
| SspI | AATATT | 1 cut(s) | 481 |
| SspMI | CTAG | 4 cut(s) | 254, 497, 786, 1080 |
| TaaI | ACNGT | 4 cut(s) | 246, 878, 1214, 1265 |
| TaqI | TCGA | 1 cut(s) | 280 |
| TaqII | GACCGA | 1 cut(s) | 458 |
| TatI | WGTACW | 2 cut(s) | 922, 994 |
| TfiI | GAWTC | 3 cut(s) | 347, 938, 965 |
| TscAI | CASTG | 3 cut(s) | 19, 33, 249 |
| TseI | GCWGC | 4 cut(s) | 5, 308, 449, 493 |
| TspDTI | ATGAA | 4 cut(s) | 59, 449, 493, 1082 |
| TspRI | CASTG | 3 cut(s) | 19, 33, 249 |
| VspI | ATTAAT | 1 cut(s) | 177 |
| XapI | RAATTY | 8 cut(s) | 19, 338, 724, 742, 882, 1111, 1270, 1354 |
| XbaI | TCTAGA | 1 cut(s) | 253 |
| XmnI | GAANNNNTTC | 2 cut(s) | 22, 689 |
| XspI | CTAG | 4 cut(s) | 254, 497, 786, 1080 |
| ZrmI | AGTACT | 1 cut(s) | 924 |