gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 32 - 144 | 1.6e-06 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 104, 117, 425 |
| AcsI | RAATTY | 2 cut(s) | 37, 251 |
| AcuI | CTGAAG | 1 cut(s) | 330 |
| AfaI | GTAC | 1 cut(s) | 290 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 156, 440 |
| AgsI | TTSAA | 5 cut(s) | 20, 37, 43, 271, 406 |
| AluBI | AGCT | 2 cut(s) | 263, 308 |
| AluI | AGCT | 2 cut(s) | 263, 308 |
| Alw21I | GWGCWC | 1 cut(s) | 448 |
| Alw26I | GTCTC | 1 cut(s) | 51 |
| Alw44I | GTGCAC | 1 cut(s) | 444 |
| AlwI | GGATC | 3 cut(s) | 104, 117, 425 |
| AoxI | GGCC | 1 cut(s) | 409 |
| ApaLI | GTGCAC | 1 cut(s) | 444 |
| ApeKI | GCWGC | 1 cut(s) | 529 |
| ApoI | RAATTY | 2 cut(s) | 37, 251 |
| AseI | ATTAAT | 1 cut(s) | 9 |
| AspA2I | CCTAGG | 1 cut(s) | 73 |
| AvrII | CCTAGG | 1 cut(s) | 73 |
| BaeGI | GKGCMC | 1 cut(s) | 448 |
| BamHI | GGATCC | 1 cut(s) | 109 |
| Bbv12I | GWGCWC | 1 cut(s) | 448 |
| BbvI | GCAGC | 1 cut(s) | 516 |
| BccI | CCATC | 1 cut(s) | 181 |
| BclI | TGATCA | 1 cut(s) | 465 |
| BcoDI | GTCTC | 1 cut(s) | 51 |
| BfaI | CTAG | 3 cut(s) | 74, 83, 242 |
| BisI | GCNGC | 1 cut(s) | 530 |
| BlnI | CCTAGG | 1 cut(s) | 73 |
| BlsI | GCNGC | 1 cut(s) | 531 |
| BmiI | GGNNCC | 1 cut(s) | 111 |
| BmsI | GCATC | 1 cut(s) | 211 |
| BsaJI | CCNNGG | 1 cut(s) | 73 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 156, 440 |
| Bse1I | ACTGG | 1 cut(s) | 352 |
| Bse3DI | GCAATG | 1 cut(s) | 276 |
| BseDI | CCNNGG | 1 cut(s) | 73 |
| BseGI | GGATG | 1 cut(s) | 192 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 156, 440 |
| BseMI | GCAATG | 1 cut(s) | 276 |
| BseMII | CTCAG | 1 cut(s) | 273 |
| BseNI | ACTGG | 1 cut(s) | 352 |
| BseSI | GKGCMC | 1 cut(s) | 448 |
| BseXI | GCAGC | 1 cut(s) | 516 |
| BshFI | GGCC | 1 cut(s) | 411 |
| BsiHKAI | GWGCWC | 1 cut(s) | 448 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 156, 440 |
| BsmAI | GTCTC | 1 cut(s) | 51 |
| BsmI | GAATGC | 2 cut(s) | 237, 328 |
| BsnI | GGCC | 1 cut(s) | 411 |
| Bsp1286I | GDGCHC | 1 cut(s) | 448 |
| Bsp143I | GATC | 4 cut(s) | 109, 195, 430, 465 |
| BspANI | GGCC | 1 cut(s) | 411 |
| BspCNI | CTCAG | 1 cut(s) | 274 |
| BspLI | GGNNCC | 1 cut(s) | 111 |
| BspPI | GGATC | 3 cut(s) | 104, 117, 425 |
| BsrDI | GCAATG | 1 cut(s) | 276 |
| BsrI | ACTGG | 1 cut(s) | 352 |
| BssECI | CCNNGG | 1 cut(s) | 73 |
| BssMI | GATC | 4 cut(s) | 109, 195, 430, 465 |
| BssT1I | CCWWGG | 1 cut(s) | 73 |
| Bst4CI | ACNGT | 2 cut(s) | 168, 484 |
| BstDEI | CTNAG | 2 cut(s) | 141, 282 |
| BstF5I | GGATG | 1 cut(s) | 192 |
| BstKTI | GATC | 4 cut(s) | 112, 198, 433, 468 |
| BstMAI | GTCTC | 1 cut(s) | 51 |
| BstMBI | GATC | 4 cut(s) | 109, 195, 430, 465 |
| BstSLI | GKGCMC | 1 cut(s) | 448 |
| BstV1I | GCAGC | 1 cut(s) | 516 |
| BstX2I | RGATCY | 1 cut(s) | 109 |
| BstYI | RGATCY | 1 cut(s) | 109 |
| BsuRI | GGCC | 1 cut(s) | 411 |
| BtsCI | GGATG | 1 cut(s) | 192 |
| BtsIMutI | CAGTG | 4 cut(s) | 173, 191, 326, 345 |
| Csp6I | GTAC | 1 cut(s) | 289 |
| CviAII | CATG | 5 cut(s) | 95, 214, 353, 418, 449 |
| CviJI | RGCY | 6 cut(s) | 149, 263, 308, 314, 411, 508 |
| CviKI_1 | RGCY | 6 cut(s) | 149, 263, 308, 314, 411, 508 |
| CviQI | GTAC | 1 cut(s) | 289 |
| DdeI | CTNAG | 2 cut(s) | 141, 282 |
| DpnI | GATC | 4 cut(s) | 111, 197, 432, 467 |
| DpnII | GATC | 4 cut(s) | 109, 195, 430, 465 |
| Eco130I | CCWWGG | 1 cut(s) | 73 |
| Eco147I | AGGCCT | 1 cut(s) | 411 |
| Eco57I | CTGAAG | 1 cut(s) | 330 |
| EcoT14I | CCWWGG | 1 cut(s) | 73 |
| ErhI | CCWWGG | 1 cut(s) | 73 |
| FaeI | CATG | 5 cut(s) | 98, 217, 356, 421, 452 |
| FatI | CATG | 5 cut(s) | 94, 213, 352, 417, 448 |
| FbaI | TGATCA | 1 cut(s) | 465 |
| Fnu4HI | GCNGC | 1 cut(s) | 530 |
| FokI | GGATG | 1 cut(s) | 199 |
| Fsp4HI | GCNGC | 1 cut(s) | 530 |
| FspBI | CTAG | 3 cut(s) | 74, 83, 242 |
| GluI | GCNGC | 1 cut(s) | 530 |
| HaeIII | GGCC | 1 cut(s) | 411 |
| Hin1II | CATG | 5 cut(s) | 98, 217, 356, 421, 452 |
| HincII | GTYRAC | 1 cut(s) | 487 |
| HindII | GTYRAC | 1 cut(s) | 487 |
| HindIII | AAGCTT | 1 cut(s) | 261 |
| HinfI | GANTC | 1 cut(s) | 245 |
| Hpy166II | GTNNAC | 3 cut(s) | 345, 446, 487 |
| Hpy188I | TCNGA | 2 cut(s) | 250, 301 |
| Hpy188III | TCNNGA | 3 cut(s) | 43, 242, 469 |
| Hpy8I | GTNNAC | 3 cut(s) | 345, 446, 487 |
| HpyAV | CCTTC | 2 cut(s) | 46, 223 |
| HpyCH4III | ACNGT | 2 cut(s) | 168, 484 |
| HpyCH4V | TGCA | 4 cut(s) | 257, 326, 446, 503 |
| HpyF3I | CTNAG | 2 cut(s) | 141, 282 |
| Hsp92II | CATG | 5 cut(s) | 98, 217, 356, 421, 452 |
| Ksp22I | TGATCA | 1 cut(s) | 465 |
| Kzo9I | GATC | 4 cut(s) | 109, 195, 430, 465 |
| LpnPI | CCDG | 7 cut(s) | 129, 142, 169, 329, 333, 381, 426 |
| Lsp1109I | GCAGC | 1 cut(s) | 516 |
| LweI | GCATC | 1 cut(s) | 211 |
| MaeI | CTAG | 3 cut(s) | 74, 83, 242 |
| MalI | GATC | 4 cut(s) | 111, 197, 432, 467 |
| MboI | GATC | 4 cut(s) | 109, 195, 430, 465 |
| MboII | GAAGA | 1 cut(s) | 467 |
| MflI | RGATCY | 1 cut(s) | 109 |
| MhlI | GDGCHC | 1 cut(s) | 448 |
| MluCI | AATT | 7 cut(s) | 15, 20, 37, 251, 271, 401, 493 |
| MnlI | CCTC | 3 cut(s) | 100, 227, 465 |
| MseI | TTAA | 1 cut(s) | 9 |
| Mva1269I | GAATGC | 2 cut(s) | 237, 328 |
| NdeII | GATC | 4 cut(s) | 109, 195, 430, 465 |
| NlaIII | CATG | 5 cut(s) | 98, 217, 356, 421, 452 |
| NlaIV | GGNNCC | 1 cut(s) | 111 |
| PceI | AGGCCT | 1 cut(s) | 411 |
| PctI | GAATGC | 2 cut(s) | 237, 328 |
| PfeI | GAWTC | 1 cut(s) | 245 |
| PkrI | GCNGC | 1 cut(s) | 531 |
| PshBI | ATTAAT | 1 cut(s) | 9 |
| PspN4I | GGNNCC | 1 cut(s) | 111 |
| PsuI | RGATCY | 1 cut(s) | 109 |
| RsaI | GTAC | 1 cut(s) | 290 |
| RsaNI | GTAC | 1 cut(s) | 289 |
| SaqAI | TTAA | 1 cut(s) | 9 |
| SatI | GCNGC | 1 cut(s) | 530 |
| Sau3AI | GATC | 4 cut(s) | 109, 195, 430, 465 |
| SduI | GDGCHC | 1 cut(s) | 448 |
| SetI | ASST | 4 cut(s) | 75, 161, 265, 310 |
| SfaNI | GCATC | 1 cut(s) | 211 |
| Sse9I | AATT | 7 cut(s) | 15, 20, 37, 251, 271, 401, 493 |
| SseBI | AGGCCT | 1 cut(s) | 411 |
| SspI | AATATT | 1 cut(s) | 424 |
| SspMI | CTAG | 3 cut(s) | 74, 83, 242 |
| StuI | AGGCCT | 1 cut(s) | 411 |
| StyI | CCWWGG | 1 cut(s) | 73 |
| TaaI | ACNGT | 2 cut(s) | 168, 484 |
| TasI | AATT | 7 cut(s) | 15, 20, 37, 251, 271, 401, 493 |
| TatI | WGTACW | 1 cut(s) | 288 |
| TfiI | GAWTC | 1 cut(s) | 245 |
| Tru1I | TTAA | 1 cut(s) | 9 |
| Tru9I | TTAA | 1 cut(s) | 9 |
| TscAI | CASTG | 4 cut(s) | 173, 198, 333, 352 |
| TseI | GCWGC | 1 cut(s) | 529 |
| TspDTI | ATGAA | 7 cut(s) | 218, 335, 353, 392, 434, 474, 506 |
| TspRI | CASTG | 4 cut(s) | 173, 198, 333, 352 |
| VneI | GTGCAC | 1 cut(s) | 444 |
| VspI | ATTAAT | 1 cut(s) | 9 |
| XapI | RAATTY | 2 cut(s) | 37, 251 |
| XbaI | TCTAGA | 1 cut(s) | 241 |
| XmaJI | CCTAGG | 1 cut(s) | 73 |
| XspI | CTAG | 3 cut(s) | 74, 83, 242 |