gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 24 - 168 | 1.5e-15 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 364, 567 |
| AclWI | GGATC | 1 cut(s) | 102 |
| AcsI | RAATTY | 1 cut(s) | 589 |
| AfaI | GTAC | 3 cut(s) | 139, 281, 548 |
| AflII | CTTAAG | 1 cut(s) | 517 |
| AgsI | TTSAA | 3 cut(s) | 58, 277, 487 |
| AluBI | AGCT | 3 cut(s) | 184, 248, 574 |
| AluI | AGCT | 3 cut(s) | 184, 248, 574 |
| Alw21I | GWGCWC | 1 cut(s) | 71 |
| AlwI | GGATC | 1 cut(s) | 102 |
| AoxI | GGCC | 1 cut(s) | 521 |
| ApeKI | GCWGC | 1 cut(s) | 245 |
| ApoI | RAATTY | 1 cut(s) | 589 |
| AsuNHI | GCTAGC | 1 cut(s) | 184 |
| BaeGI | GKGCMC | 1 cut(s) | 623 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 530, 563 |
| BbsI | GAAGAC | 1 cut(s) | 535 |
| Bbv12I | GWGCWC | 1 cut(s) | 71 |
| BbvI | GCAGC | 1 cut(s) | 257 |
| BccI | CCATC | 2 cut(s) | 349, 485 |
| BceAI | ACGGC | 1 cut(s) | 349 |
| BclI | TGATCA | 1 cut(s) | 321 |
| BfaI | CTAG | 2 cut(s) | 185, 249 |
| BfmI | CTRYAG | 1 cut(s) | 48 |
| BfrI | CTTAAG | 1 cut(s) | 517 |
| BfuAI | ACCTGC | 2 cut(s) | 364, 567 |
| BisI | GCNGC | 1 cut(s) | 246 |
| BlsI | GCNGC | 1 cut(s) | 247 |
| BmsI | GCATC | 1 cut(s) | 197 |
| BmtI | GCTAGC | 1 cut(s) | 188 |
| BpiI | GAAGAC | 1 cut(s) | 535 |
| BpmI | CTGGAG | 1 cut(s) | 475 |
| Bpu10I | CCTNAGC | 1 cut(s) | 180 |
| BsaJI | CCNNGG | 1 cut(s) | 258 |
| Bse1I | ACTGG | 2 cut(s) | 429, 458 |
| BseDI | CCNNGG | 1 cut(s) | 258 |
| BseGI | GGATG | 1 cut(s) | 373 |
| BseMII | CTCAG | 3 cut(s) | 27, 171, 355 |
| BseNI | ACTGG | 2 cut(s) | 429, 458 |
| BseSI | GKGCMC | 1 cut(s) | 623 |
| BseXI | GCAGC | 1 cut(s) | 257 |
| BshFI | GGCC | 1 cut(s) | 523 |
| BsiHKAI | GWGCWC | 1 cut(s) | 71 |
| BsmI | GAATGC | 1 cut(s) | 12 |
| BsnI | GGCC | 1 cut(s) | 523 |
| Bsp1286I | GDGCHC | 2 cut(s) | 71, 623 |
| Bsp143I | GATC | 2 cut(s) | 107, 321 |
| BspANI | GGCC | 1 cut(s) | 523 |
| BspCNI | CTCAG | 3 cut(s) | 28, 172, 354 |
| BspHI | TCATGA | 2 cut(s) | 268, 312 |
| BspMI | ACCTGC | 2 cut(s) | 364, 567 |
| BspOI | GCTAGC | 1 cut(s) | 188 |
| BspPI | GGATC | 1 cut(s) | 102 |
| BspQI | GCTCTTC | 1 cut(s) | 168 |
| BspTI | CTTAAG | 1 cut(s) | 517 |
| BsrI | ACTGG | 2 cut(s) | 429, 458 |
| BssECI | CCNNGG | 1 cut(s) | 258 |
| BssMI | GATC | 2 cut(s) | 107, 321 |
| BssT1I | CCWWGG | 1 cut(s) | 258 |
| Bst4CI | ACNGT | 1 cut(s) | 157 |
| Bst6I | CTCTTC | 1 cut(s) | 168 |
| BstAFI | CTTAAG | 1 cut(s) | 517 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 379 |
| BstC8I | GCNNGC | 1 cut(s) | 186 |
| BstDEI | CTNAG | 7 cut(s) | 36, 123, 180, 216, 341, 422, 494 |
| BstF5I | GGATG | 1 cut(s) | 373 |
| BstKTI | GATC | 2 cut(s) | 110, 324 |
| BstMBI | GATC | 2 cut(s) | 107, 321 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 245, 379, 605 |
| BstSFI | CTRYAG | 1 cut(s) | 48 |
| BstSLI | GKGCMC | 1 cut(s) | 623 |
| BstV1I | GCAGC | 1 cut(s) | 257 |
| BstV2I | GAAGAC | 1 cut(s) | 535 |
| BstX2I | RGATCY | 1 cut(s) | 107 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 118 |
| BstYI | RGATCY | 1 cut(s) | 107 |
| BsuRI | GGCC | 1 cut(s) | 523 |
| BtsCI | GGATG | 1 cut(s) | 373 |
| BveI | ACCTGC | 2 cut(s) | 364, 567 |
| Cac8I | GCNNGC | 1 cut(s) | 186 |
| CciI | TCATGA | 2 cut(s) | 268, 312 |
| Csp6I | GTAC | 3 cut(s) | 138, 280, 547 |
| CviAII | CATG | 5 cut(s) | 11, 269, 283, 313, 624 |
| CviJI | RGCY | 9 cut(s) | 46, 122, 178, 184, 248, 492, 516, 523, 574 |
| CviKI_1 | RGCY | 9 cut(s) | 46, 122, 178, 184, 248, 492, 516, 523, 574 |
| CviQI | GTAC | 3 cut(s) | 138, 280, 547 |
| DdeI | CTNAG | 7 cut(s) | 36, 123, 180, 216, 341, 422, 494 |
| DpnI | GATC | 2 cut(s) | 109, 323 |
| DpnII | GATC | 2 cut(s) | 107, 321 |
| DraI | TTTAAA | 2 cut(s) | 223, 588 |
| Eam1104I | CTCTTC | 1 cut(s) | 168 |
| EarI | CTCTTC | 1 cut(s) | 168 |
| Eco130I | CCWWGG | 1 cut(s) | 258 |
| EcoT14I | CCWWGG | 1 cut(s) | 258 |
| EcoT22I | ATGCAT | 1 cut(s) | 12 |
| ErhI | CCWWGG | 1 cut(s) | 258 |
| FaeI | CATG | 5 cut(s) | 14, 272, 286, 316, 627 |
| FatI | CATG | 5 cut(s) | 10, 268, 282, 312, 623 |
| FbaI | TGATCA | 1 cut(s) | 321 |
| Fnu4HI | GCNGC | 1 cut(s) | 246 |
| FokI | GGATG | 1 cut(s) | 380 |
| Fsp4HI | GCNGC | 1 cut(s) | 246 |
| FspBI | CTAG | 2 cut(s) | 185, 249 |
| GluI | GCNGC | 1 cut(s) | 246 |
| GsuI | CTGGAG | 1 cut(s) | 475 |
| HaeIII | GGCC | 1 cut(s) | 523 |
| Hin1II | CATG | 5 cut(s) | 14, 272, 286, 316, 627 |
| HinfI | GANTC | 2 cut(s) | 127, 339 |
| Hpy188I | TCNGA | 1 cut(s) | 193 |
| Hpy188III | TCNNGA | 3 cut(s) | 200, 269, 313 |
| HpyCH4III | ACNGT | 1 cut(s) | 157 |
| HpyCH4V | TGCA | 5 cut(s) | 10, 382, 389, 562, 608 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 245, 379, 605 |
| HpyF3I | CTNAG | 7 cut(s) | 36, 123, 180, 216, 341, 422, 494 |
| Hsp92II | CATG | 5 cut(s) | 14, 272, 286, 316, 627 |
| Ksp22I | TGATCA | 1 cut(s) | 321 |
| Kzo9I | GATC | 2 cut(s) | 107, 321 |
| LguI | GCTCTTC | 1 cut(s) | 168 |
| LpnPI | CCDG | 9 cut(s) | 145, 185, 192, 276, 328, 359, 439, 442, 572 |
| Lsp1109I | GCAGC | 1 cut(s) | 257 |
| LweI | GCATC | 1 cut(s) | 197 |
| MaeI | CTAG | 2 cut(s) | 185, 249 |
| MaeIII | GTNAC | 1 cut(s) | 431 |
| MalI | GATC | 2 cut(s) | 109, 323 |
| MboI | GATC | 2 cut(s) | 107, 321 |
| MboII | GAAGA | 3 cut(s) | 185, 328, 540 |
| MflI | RGATCY | 1 cut(s) | 107 |
| MhlI | GDGCHC | 2 cut(s) | 71, 623 |
| MluCI | AATT | 4 cut(s) | 53, 436, 589, 614 |
| MlyI | GAGTC | 1 cut(s) | 333 |
| MnlI | CCTC | 2 cut(s) | 31, 151 |
| Mph1103I | ATGCAT | 1 cut(s) | 12 |
| MseI | TTAA | 4 cut(s) | 222, 518, 587, 593 |
| MslI | CAYNNNNRTG | 1 cut(s) | 317 |
| MspCI | CTTAAG | 1 cut(s) | 517 |
| Mva1269I | GAATGC | 1 cut(s) | 12 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 245, 379, 605 |
| NdeII | GATC | 2 cut(s) | 107, 321 |
| NheI | GCTAGC | 1 cut(s) | 184 |
| NlaIII | CATG | 5 cut(s) | 14, 272, 286, 316, 627 |
| NsiI | ATGCAT | 1 cut(s) | 12 |
| PagI | TCATGA | 2 cut(s) | 268, 312 |
| PciSI | GCTCTTC | 1 cut(s) | 168 |
| PctI | GAATGC | 1 cut(s) | 12 |
| PfeI | GAWTC | 1 cut(s) | 127 |
| PkrI | GCNGC | 1 cut(s) | 247 |
| PleI | GAGTC | 1 cut(s) | 333 |
| PpsI | GAGTC | 1 cut(s) | 333 |
| PsuI | RGATCY | 1 cut(s) | 107 |
| RsaI | GTAC | 3 cut(s) | 139, 281, 548 |
| RsaNI | GTAC | 3 cut(s) | 138, 280, 547 |
| RseI | CAYNNNNRTG | 1 cut(s) | 317 |
| SapI | GCTCTTC | 1 cut(s) | 168 |
| SaqAI | TTAA | 4 cut(s) | 222, 518, 587, 593 |
| SatI | GCNGC | 1 cut(s) | 246 |
| Sau3AI | GATC | 2 cut(s) | 107, 321 |
| SchI | GAGTC | 1 cut(s) | 333 |
| SduI | GDGCHC | 2 cut(s) | 71, 623 |
| SfaNI | GCATC | 1 cut(s) | 197 |
| SfcI | CTRYAG | 1 cut(s) | 48 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 317 |
| SmlI | CTYRAG | 1 cut(s) | 517 |
| SmoI | CTYRAG | 1 cut(s) | 517 |
| Sse9I | AATT | 4 cut(s) | 53, 436, 589, 614 |
| SspMI | CTAG | 2 cut(s) | 185, 249 |
| StyI | CCWWGG | 1 cut(s) | 258 |
| TaaI | ACNGT | 1 cut(s) | 157 |
| TasI | AATT | 4 cut(s) | 53, 436, 589, 614 |
| TatI | WGTACW | 1 cut(s) | 279 |
| TfiI | GAWTC | 1 cut(s) | 127 |
| Tru1I | TTAA | 4 cut(s) | 222, 518, 587, 593 |
| Tru9I | TTAA | 4 cut(s) | 222, 518, 587, 593 |
| TseI | GCWGC | 1 cut(s) | 245 |
| TspDTI | ATGAA | 4 cut(s) | 75, 257, 329, 480 |
| Vha464I | CTTAAG | 1 cut(s) | 517 |
| XapI | RAATTY | 1 cut(s) | 589 |
| XspI | CTAG | 2 cut(s) | 185, 249 |
| Zsp2I | ATGCAT | 1 cut(s) | 12 |