gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 13 - 130 | 2.8e-16 | gag-polypeptide of LTR copia-type |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 496 |
| AcsI | RAATTY | 4 cut(s) | 68, 152, 394, 431 |
| AcuI | CTGAAG | 1 cut(s) | 542 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 452, 515 |
| AflII | CTTAAG | 1 cut(s) | 377 |
| AgsI | TTSAA | 8 cut(s) | 76, 97, 191, 217, 257, 268, 362, 425 |
| AjnI | CCWGG | 1 cut(s) | 445 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 417, 449 |
| AluBI | AGCT | 1 cut(s) | 53 |
| AluI | AGCT | 1 cut(s) | 53 |
| Alw26I | GTCTC | 1 cut(s) | 117 |
| AoxI | GGCC | 1 cut(s) | 219 |
| ApeKI | GCWGC | 2 cut(s) | 206, 497 |
| ApoI | RAATTY | 4 cut(s) | 68, 152, 394, 431 |
| AseI | ATTAAT | 1 cut(s) | 128 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 294 |
| AspS9I | GGNCC | 2 cut(s) | 467, 485 |
| AsuII | TTCGAA | 1 cut(s) | 594 |
| AvaII | GGWCC | 2 cut(s) | 467, 485 |
| BbvI | GCAGC | 2 cut(s) | 218, 484 |
| BccI | CCATC | 1 cut(s) | 152 |
| BciT130I | CCWGG | 1 cut(s) | 447 |
| BcoDI | GTCTC | 1 cut(s) | 117 |
| BfmI | CTRYAG | 2 cut(s) | 18, 541 |
| BfrI | CTTAAG | 1 cut(s) | 377 |
| BfuAI | ACCTGC | 1 cut(s) | 496 |
| BisI | GCNGC | 2 cut(s) | 207, 498 |
| BlsI | GCNGC | 2 cut(s) | 208, 499 |
| Bme1390I | CCNGG | 1 cut(s) | 447 |
| Bme18I | GGWCC | 2 cut(s) | 467, 485 |
| BmgT120I | GGNCC | 2 cut(s) | 467, 485 |
| BmiI | GGNNCC | 1 cut(s) | 507 |
| BmrFI | CCNGG | 1 cut(s) | 447 |
| BmsI | GCATC | 1 cut(s) | 484 |
| Bpu10I | CCTNAGC | 2 cut(s) | 63, 501 |
| Bpu14I | TTCGAA | 1 cut(s) | 594 |
| BsaJI | CCNNGG | 1 cut(s) | 222 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 452, 515 |
| Bse1I | ACTGG | 1 cut(s) | 348 |
| BseBI | CCWGG | 1 cut(s) | 447 |
| BseDI | CCNNGG | 1 cut(s) | 222 |
| BseGI | GGATG | 1 cut(s) | 244 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 452, 515 |
| BseMII | CTCAG | 2 cut(s) | 296, 515 |
| BseNI | ACTGG | 1 cut(s) | 348 |
| BseRI | GAGGAG | 1 cut(s) | 270 |
| BseXI | GCAGC | 2 cut(s) | 218, 484 |
| BshFI | GGCC | 1 cut(s) | 221 |
| BslFI | GGGAC | 2 cut(s) | 136, 531 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 452, 515 |
| BsmAI | GTCTC | 1 cut(s) | 117 |
| BsmFI | GGGAC | 2 cut(s) | 136, 531 |
| BsnI | GGCC | 1 cut(s) | 221 |
| Bsp119I | TTCGAA | 1 cut(s) | 594 |
| BspANI | GGCC | 1 cut(s) | 221 |
| BspCNI | CTCAG | 2 cut(s) | 295, 514 |
| BspLI | GGNNCC | 1 cut(s) | 507 |
| BspMI | ACCTGC | 1 cut(s) | 496 |
| BspT104I | TTCGAA | 1 cut(s) | 594 |
| BspTI | CTTAAG | 1 cut(s) | 377 |
| BsrI | ACTGG | 1 cut(s) | 348 |
| BssECI | CCNNGG | 1 cut(s) | 222 |
| BssT1I | CCWWGG | 1 cut(s) | 222 |
| Bst2UI | CCWGG | 1 cut(s) | 447 |
| BstAFI | CTTAAG | 1 cut(s) | 377 |
| BstBI | TTCGAA | 1 cut(s) | 594 |
| BstC8I | GCNNGC | 1 cut(s) | 173 |
| BstDEI | CTNAG | 3 cut(s) | 63, 282, 501 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 450 |
| BstF5I | GGATG | 1 cut(s) | 244 |
| BstMAI | GTCTC | 1 cut(s) | 117 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 59, 497, 503 |
| BstNI | CCWGG | 1 cut(s) | 447 |
| BstNSI | RCATGY | 2 cut(s) | 175, 185 |
| BstSCI | CCNGG | 1 cut(s) | 445 |
| BstSFI | CTRYAG | 2 cut(s) | 18, 541 |
| BstV1I | GCAGC | 2 cut(s) | 218, 484 |
| BsuRI | GGCC | 1 cut(s) | 221 |
| BtsCI | GGATG | 1 cut(s) | 244 |
| BveI | ACCTGC | 1 cut(s) | 496 |
| Cac8I | GCNNGC | 1 cut(s) | 173 |
| Cfr13I | GGNCC | 2 cut(s) | 467, 485 |
| CviAII | CATG | 5 cut(s) | 172, 176, 182, 416, 588 |
| CviJI | RGCY | 7 cut(s) | 53, 89, 134, 221, 376, 506, 625 |
| CviKI_1 | RGCY | 7 cut(s) | 53, 89, 134, 221, 376, 506, 625 |
| DdeI | CTNAG | 3 cut(s) | 63, 282, 501 |
| Eco130I | CCWWGG | 1 cut(s) | 222 |
| Eco147I | AGGCCT | 1 cut(s) | 221 |
| Eco47I | GGWCC | 2 cut(s) | 467, 485 |
| Eco57I | CTGAAG | 1 cut(s) | 542 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 450 |
| EcoRI | GAATTC | 1 cut(s) | 68 |
| EcoRII | CCWGG | 1 cut(s) | 445 |
| EcoT14I | CCWWGG | 1 cut(s) | 222 |
| EcoT22I | ATGCAT | 1 cut(s) | 177 |
| ErhI | CCWWGG | 1 cut(s) | 222 |
| FaeI | CATG | 5 cut(s) | 175, 179, 185, 419, 591 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 56, 88, 360, 392 |
| FaqI | GGGAC | 2 cut(s) | 136, 531 |
| FatI | CATG | 5 cut(s) | 171, 175, 181, 415, 587 |
| Fnu4HI | GCNGC | 2 cut(s) | 207, 498 |
| FokI | GGATG | 1 cut(s) | 251 |
| Fsp4HI | GCNGC | 2 cut(s) | 207, 498 |
| GluI | GCNGC | 2 cut(s) | 207, 498 |
| HaeIII | GGCC | 1 cut(s) | 221 |
| Hin1II | CATG | 5 cut(s) | 175, 179, 185, 419, 591 |
| HinfI | GANTC | 1 cut(s) | 607 |
| Hpy188I | TCNGA | 1 cut(s) | 300 |
| Hpy188III | TCNNGA | 4 cut(s) | 73, 97, 188, 362 |
| HpyAV | CCTTC | 5 cut(s) | 211, 362, 366, 517, 545 |
| HpyCH4IV | ACGT | 1 cut(s) | 580 |
| HpyCH4V | TGCA | 3 cut(s) | 119, 175, 458 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 59, 497, 503 |
| HpyF3I | CTNAG | 3 cut(s) | 63, 282, 501 |
| HpySE526I | ACGT | 1 cut(s) | 580 |
| Hsp92II | CATG | 5 cut(s) | 175, 179, 185, 419, 591 |
| LmnI | GCTCC | 1 cut(s) | 511 |
| LpnPI | CCDG | 7 cut(s) | 105, 188, 361, 432, 459, 488, 501 |
| Lsp1109I | GCAGC | 2 cut(s) | 218, 484 |
| LweI | GCATC | 1 cut(s) | 484 |
| MaeII | ACGT | 1 cut(s) | 580 |
| MboII | GAAGA | 2 cut(s) | 88, 450 |
| MluCI | AATT | 8 cut(s) | 57, 68, 152, 212, 257, 341, 394, 431 |
| MnlI | CCTC | 4 cut(s) | 79, 288, 291, 358 |
| Mph1103I | ATGCAT | 1 cut(s) | 177 |
| MroXI | GAANNNNTTC | 1 cut(s) | 294 |
| MseI | TTAA | 5 cut(s) | 128, 303, 318, 336, 378 |
| MslI | CAYNNNNRTG | 1 cut(s) | 180 |
| MspCI | CTTAAG | 1 cut(s) | 377 |
| MspR9I | CCNGG | 1 cut(s) | 447 |
| MvaI | CCWGG | 1 cut(s) | 447 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 59, 497, 503 |
| NlaIII | CATG | 5 cut(s) | 175, 179, 185, 419, 591 |
| NlaIV | GGNNCC | 1 cut(s) | 507 |
| NsiI | ATGCAT | 1 cut(s) | 177 |
| NspI | RCATGY | 2 cut(s) | 175, 185 |
| NspV | TTCGAA | 1 cut(s) | 594 |
| PaeI | GCATGC | 1 cut(s) | 175 |
| PceI | AGGCCT | 1 cut(s) | 221 |
| PdmI | GAANNNNTTC | 1 cut(s) | 294 |
| PfeI | GAWTC | 1 cut(s) | 607 |
| PkrI | GCNGC | 2 cut(s) | 208, 499 |
| PshBI | ATTAAT | 1 cut(s) | 128 |
| Psp6I | CCWGG | 1 cut(s) | 445 |
| PspGI | CCWGG | 1 cut(s) | 445 |
| PspN4I | GGNNCC | 1 cut(s) | 507 |
| PspPI | GGNCC | 2 cut(s) | 467, 485 |
| RseI | CAYNNNNRTG | 1 cut(s) | 180 |
| SaqAI | TTAA | 5 cut(s) | 128, 303, 318, 336, 378 |
| SatI | GCNGC | 2 cut(s) | 207, 498 |
| Sau96I | GGNCC | 2 cut(s) | 467, 485 |
| ScrFI | CCNGG | 1 cut(s) | 447 |
| SetI | ASST | 6 cut(s) | 55, 415, 448, 457, 490, 583 |
| SfaNI | GCATC | 1 cut(s) | 484 |
| SfcI | CTRYAG | 2 cut(s) | 18, 541 |
| SfuI | TTCGAA | 1 cut(s) | 594 |
| SinI | GGWCC | 2 cut(s) | 467, 485 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 180 |
| SmlI | CTYRAG | 1 cut(s) | 377 |
| SmoI | CTYRAG | 1 cut(s) | 377 |
| SphI | GCATGC | 1 cut(s) | 175 |
| Sse9I | AATT | 8 cut(s) | 57, 68, 152, 212, 257, 341, 394, 431 |
| SseBI | AGGCCT | 1 cut(s) | 221 |
| StuI | AGGCCT | 1 cut(s) | 221 |
| StyD4I | CCNGG | 1 cut(s) | 445 |
| StyI | CCWWGG | 1 cut(s) | 222 |
| TaiI | ACGT | 1 cut(s) | 583 |
| TaqI | TCGA | 1 cut(s) | 594 |
| TasI | AATT | 8 cut(s) | 57, 68, 152, 212, 257, 341, 394, 431 |
| TfiI | GAWTC | 1 cut(s) | 607 |
| Tru1I | TTAA | 5 cut(s) | 128, 303, 318, 336, 378 |
| Tru9I | TTAA | 5 cut(s) | 128, 303, 318, 336, 378 |
| TseI | GCWGC | 2 cut(s) | 206, 497 |
| TspDTI | ATGAA | 4 cut(s) | 245, 303, 354, 392 |
| Vha464I | CTTAAG | 1 cut(s) | 377 |
| VpaK11BI | GGWCC | 2 cut(s) | 467, 485 |
| VspI | ATTAAT | 1 cut(s) | 128 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 450 |
| XapI | RAATTY | 4 cut(s) | 68, 152, 394, 431 |
| XceI | RCATGY | 2 cut(s) | 175, 185 |
| XmnI | GAANNNNTTC | 1 cut(s) | 294 |
| Zsp2I | ATGCAT | 1 cut(s) | 177 |