gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 19 - 119 | 3.4e-11 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 87 |
| AclWI | GGATC | 1 cut(s) | 24 |
| AcuI | CTGAAG | 1 cut(s) | 363 |
| AfaI | GTAC | 1 cut(s) | 395 |
| AgsI | TTSAA | 1 cut(s) | 162 |
| AluBI | AGCT | 7 cut(s) | 49, 102, 116, 178, 233, 268, 313 |
| AluI | AGCT | 7 cut(s) | 49, 102, 116, 178, 233, 268, 313 |
| Alw21I | GWGCWC | 2 cut(s) | 65, 303 |
| AlwI | GGATC | 1 cut(s) | 24 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 386 |
| ApeKI | GCWGC | 2 cut(s) | 102, 239 |
| Bbv12I | GWGCWC | 2 cut(s) | 65, 303 |
| BbvCI | CCTCAGC | 2 cut(s) | 234, 335 |
| BbvI | GCAGC | 2 cut(s) | 89, 226 |
| BfaI | CTAG | 3 cut(s) | 50, 194, 243 |
| BfmI | CTRYAG | 1 cut(s) | 398 |
| BisI | GCNGC | 2 cut(s) | 103, 240 |
| BlsI | GCNGC | 2 cut(s) | 104, 241 |
| BmsI | GCATC | 1 cut(s) | 13 |
| BpmI | CTGGAG | 1 cut(s) | 290 |
| Bpu10I | CCTNAGC | 2 cut(s) | 234, 335 |
| BpuEI | CTTGAG | 1 cut(s) | 349 |
| BsaBI | GATNNNNATC | 1 cut(s) | 213 |
| BsaJI | CCNNGG | 1 cut(s) | 183 |
| Bse8I | GATNNNNATC | 1 cut(s) | 213 |
| BseDI | CCNNGG | 1 cut(s) | 183 |
| BseJI | GATNNNNATC | 1 cut(s) | 213 |
| BseMII | CTCAG | 4 cut(s) | 48, 225, 326, 372 |
| BseXI | GCAGC | 2 cut(s) | 89, 226 |
| BsiHKAI | GWGCWC | 2 cut(s) | 65, 303 |
| BslFI | GGGAC | 1 cut(s) | 366 |
| BsmFI | GGGAC | 1 cut(s) | 366 |
| Bsp1286I | GDGCHC | 2 cut(s) | 65, 303 |
| Bsp143I | GATC | 1 cut(s) | 16 |
| BspCNI | CTCAG | 4 cut(s) | 49, 226, 327, 371 |
| BspPI | GGATC | 1 cut(s) | 24 |
| BssECI | CCNNGG | 1 cut(s) | 183 |
| BssMI | GATC | 1 cut(s) | 16 |
| Bst4CI | ACNGT | 1 cut(s) | 151 |
| BstC8I | GCNNGC | 1 cut(s) | 180 |
| BstDEI | CTNAG | 4 cut(s) | 57, 234, 335, 358 |
| BstDSI | CCRYGG | 1 cut(s) | 183 |
| BstKTI | GATC | 1 cut(s) | 19 |
| BstMBI | GATC | 1 cut(s) | 16 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 239 |
| BstNSI | RCATGY | 1 cut(s) | 372 |
| BstSFI | CTRYAG | 1 cut(s) | 398 |
| BstV1I | GCAGC | 2 cut(s) | 89, 226 |
| BstX2I | RGATCY | 1 cut(s) | 16 |
| BstYI | RGATCY | 1 cut(s) | 16 |
| BtgI | CCRYGG | 1 cut(s) | 183 |
| BtsI | GCAGTG | 1 cut(s) | 384 |
| BtsIMutI | CAGTG | 2 cut(s) | 147, 384 |
| Cac8I | GCNNGC | 1 cut(s) | 180 |
| CaiI | CAGNNNCTG | 1 cut(s) | 386 |
| Csp6I | GTAC | 1 cut(s) | 394 |
| CviAII | CATG | 3 cut(s) | 139, 349, 369 |
| CviQI | GTAC | 1 cut(s) | 394 |
| DdeI | CTNAG | 4 cut(s) | 57, 234, 335, 358 |
| DpnI | GATC | 1 cut(s) | 18 |
| DpnII | GATC | 1 cut(s) | 16 |
| Eco57I | CTGAAG | 1 cut(s) | 363 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaeI | CATG | 3 cut(s) | 142, 352, 372 |
| FaqI | GGGAC | 1 cut(s) | 366 |
| FatI | CATG | 3 cut(s) | 138, 348, 368 |
| Fnu4HI | GCNGC | 2 cut(s) | 103, 240 |
| Fsp4HI | GCNGC | 2 cut(s) | 103, 240 |
| FspBI | CTAG | 3 cut(s) | 50, 194, 243 |
| GluI | GCNGC | 2 cut(s) | 103, 240 |
| GsuI | CTGGAG | 1 cut(s) | 290 |
| Hin1II | CATG | 3 cut(s) | 142, 352, 372 |
| HinfI | GANTC | 1 cut(s) | 354 |
| Hpy188I | TCNGA | 1 cut(s) | 145 |
| Hpy188III | TCNNGA | 2 cut(s) | 218, 279 |
| HpyCH4III | ACNGT | 1 cut(s) | 151 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 105, 368 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 239 |
| HpyF3I | CTNAG | 4 cut(s) | 57, 234, 335, 358 |
| Hsp92II | CATG | 3 cut(s) | 142, 352, 372 |
| Kzo9I | GATC | 1 cut(s) | 16 |
| LmnI | GCTCC | 2 cut(s) | 298, 310 |
| LpnPI | CCDG | 6 cut(s) | 94, 186, 203, 254, 264, 345 |
| Lsp1109I | GCAGC | 2 cut(s) | 89, 226 |
| LweI | GCATC | 1 cut(s) | 13 |
| MaeI | CTAG | 3 cut(s) | 50, 194, 243 |
| MaeIII | GTNAC | 2 cut(s) | 224, 382 |
| MalI | GATC | 1 cut(s) | 18 |
| MboI | GATC | 1 cut(s) | 16 |
| MboII | GAAGA | 1 cut(s) | 80 |
| MflI | RGATCY | 1 cut(s) | 16 |
| MhlI | GDGCHC | 2 cut(s) | 65, 303 |
| MlyI | GAGTC | 1 cut(s) | 348 |
| MnlI | CCTC | 7 cut(s) | 25, 145, 229, 288, 324, 330, 332 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 1 cut(s) | 261 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 239 |
| NdeII | GATC | 1 cut(s) | 16 |
| NlaIII | CATG | 3 cut(s) | 142, 352, 372 |
| NmuCI | GTSAC | 2 cut(s) | 224, 382 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 372 |
| PkrI | GCNGC | 2 cut(s) | 104, 241 |
| PleI | GAGTC | 1 cut(s) | 348 |
| PpsI | GAGTC | 1 cut(s) | 348 |
| PsiI | TTATAA | 1 cut(s) | 87 |
| PstNI | CAGNNNCTG | 1 cut(s) | 386 |
| PsuI | RGATCY | 1 cut(s) | 16 |
| RsaI | GTAC | 1 cut(s) | 395 |
| RsaNI | GTAC | 1 cut(s) | 394 |
| SaqAI | TTAA | 1 cut(s) | 261 |
| SatI | GCNGC | 2 cut(s) | 103, 240 |
| Sau3AI | GATC | 1 cut(s) | 16 |
| SchI | GAGTC | 1 cut(s) | 348 |
| SduI | GDGCHC | 2 cut(s) | 65, 303 |
| SfaNI | GCATC | 1 cut(s) | 13 |
| SfcI | CTRYAG | 1 cut(s) | 398 |
| SmlI | CTYRAG | 1 cut(s) | 328 |
| SmoI | CTYRAG | 1 cut(s) | 328 |
| SspI | AATATT | 1 cut(s) | 83 |
| SspMI | CTAG | 3 cut(s) | 50, 194, 243 |
| TaaI | ACNGT | 1 cut(s) | 151 |
| Tru1I | TTAA | 1 cut(s) | 261 |
| Tru9I | TTAA | 1 cut(s) | 261 |
| TscAI | CASTG | 2 cut(s) | 154, 391 |
| TseFI | GTSAC | 2 cut(s) | 224, 382 |
| TseI | GCWGC | 2 cut(s) | 102, 239 |
| Tsp45I | GTSAC | 2 cut(s) | 224, 382 |
| TspGWI | ACGGA | 1 cut(s) | 200 |
| TspRI | CASTG | 2 cut(s) | 154, 391 |
| XceI | RCATGY | 1 cut(s) | 372 |
| XspI | CTAG | 3 cut(s) | 50, 194, 243 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |