gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 53 - 204 | 9e-20 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 195 |
| Acc36I | ACCTGC | 1 cut(s) | 466 |
| AclWI | GGATC | 1 cut(s) | 132 |
| AcsI | RAATTY | 1 cut(s) | 95 |
| AcuI | CTGAAG | 1 cut(s) | 363 |
| AfaI | GTAC | 2 cut(s) | 172, 244 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 139, 457 |
| AgsI | TTSAA | 1 cut(s) | 370 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 39 |
| AluBI | AGCT | 3 cut(s) | 350, 376, 571 |
| AluI | AGCT | 3 cut(s) | 350, 376, 571 |
| Alw21I | GWGCWC | 1 cut(s) | 411 |
| Alw26I | GTCTC | 3 cut(s) | 181, 441, 542 |
| AlwI | GGATC | 1 cut(s) | 132 |
| Ama87I | CYCGRG | 1 cut(s) | 281 |
| ApeKI | GCWGC | 2 cut(s) | 210, 347 |
| ApoI | RAATTY | 1 cut(s) | 95 |
| AseI | ATTAAT | 1 cut(s) | 432 |
| AspS9I | GGNCC | 1 cut(s) | 142 |
| AvaI | CYCGRG | 1 cut(s) | 281 |
| AvaII | GGWCC | 1 cut(s) | 142 |
| AxyI | CCTNAGG | 1 cut(s) | 37 |
| BanII | GRGCYC | 1 cut(s) | 282 |
| Bbv12I | GWGCWC | 1 cut(s) | 411 |
| BbvI | GCAGC | 2 cut(s) | 222, 359 |
| BcoDI | GTCTC | 3 cut(s) | 181, 441, 542 |
| BfaI | CTAG | 6 cut(s) | 158, 351, 360, 438, 452, 545 |
| BfmI | CTRYAG | 1 cut(s) | 514 |
| BfuAI | ACCTGC | 1 cut(s) | 466 |
| BisI | GCNGC | 2 cut(s) | 211, 348 |
| BlsI | GCNGC | 2 cut(s) | 212, 349 |
| Bme18I | GGWCC | 1 cut(s) | 142 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 39 |
| BmeT110I | CYCGRG | 1 cut(s) | 281 |
| BmgT120I | GGNCC | 1 cut(s) | 142 |
| BmiI | GGNNCC | 2 cut(s) | 279, 560 |
| BmsI | GCATC | 1 cut(s) | 42 |
| BpuEI | CTTGAG | 1 cut(s) | 158 |
| BsaI | GGTCTC | 2 cut(s) | 441, 542 |
| BsaJI | CCNNGG | 1 cut(s) | 291 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 269, 299 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 139, 457 |
| Bse21I | CCTNAGG | 1 cut(s) | 37 |
| BseDI | CCNNGG | 1 cut(s) | 291 |
| BseGI | GGATG | 1 cut(s) | 595 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 139, 457 |
| BseMII | CTCAG | 3 cut(s) | 368, 457, 515 |
| BseRI | GAGGAG | 1 cut(s) | 608 |
| BseXI | GCAGC | 2 cut(s) | 222, 359 |
| BsiHKAI | GWGCWC | 1 cut(s) | 411 |
| BsiHKCI | CYCGRG | 1 cut(s) | 281 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 139, 457 |
| BsmAI | GTCTC | 3 cut(s) | 181, 441, 542 |
| Bso31I | GGTCTC | 2 cut(s) | 441, 542 |
| BsoBI | CYCGRG | 1 cut(s) | 281 |
| Bsp1286I | GDGCHC | 2 cut(s) | 282, 411 |
| Bsp143I | GATC | 1 cut(s) | 124 |
| Bsp19I | CCATGG | 1 cut(s) | 291 |
| BspCNI | CTCAG | 3 cut(s) | 369, 456, 516 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 2 cut(s) | 279, 560 |
| BspMI | ACCTGC | 1 cut(s) | 466 |
| BspPI | GGATC | 1 cut(s) | 132 |
| BspTNI | GGTCTC | 2 cut(s) | 441, 542 |
| BssECI | CCNNGG | 1 cut(s) | 291 |
| BssMI | GATC | 1 cut(s) | 124 |
| BssT1I | CCWWGG | 1 cut(s) | 291 |
| Bst4CI | ACNGT | 1 cut(s) | 259 |
| Bst6I | CTCTTC | 1 cut(s) | 607 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 415, 481 |
| BstDEI | CTNAG | 4 cut(s) | 37, 377, 443, 524 |
| BstDSI | CCRYGG | 1 cut(s) | 291 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 137 |
| BstF5I | GGATG | 1 cut(s) | 595 |
| BstKTI | GATC | 1 cut(s) | 127 |
| BstMAI | GTCTC | 3 cut(s) | 181, 441, 542 |
| BstMBI | GATC | 1 cut(s) | 124 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 347, 415, 481 |
| BstNSI | RCATGY | 1 cut(s) | 488 |
| BstSFI | CTRYAG | 1 cut(s) | 514 |
| BstV1I | GCAGC | 2 cut(s) | 222, 359 |
| BstX2I | RGATCY | 1 cut(s) | 124 |
| BstYI | RGATCY | 1 cut(s) | 124 |
| Bsu36I | CCTNAGG | 1 cut(s) | 37 |
| BtgI | CCRYGG | 1 cut(s) | 291 |
| BtsCI | GGATG | 1 cut(s) | 595 |
| BtsI | GCAGTG | 1 cut(s) | 403 |
| BtsIMutI | CAGTG | 2 cut(s) | 264, 403 |
| BveI | ACCTGC | 1 cut(s) | 466 |
| CciI | TCATGA | 1 cut(s) | 301 |
| Cfr13I | GGNCC | 1 cut(s) | 142 |
| Csp6I | GTAC | 2 cut(s) | 171, 243 |
| CviAII | CATG | 5 cut(s) | 109, 121, 292, 302, 485 |
| CviJI | RGCY | 8 cut(s) | 224, 280, 290, 341, 350, 376, 442, 571 |
| CviKI_1 | RGCY | 8 cut(s) | 224, 280, 290, 341, 350, 376, 442, 571 |
| CviQI | GTAC | 2 cut(s) | 171, 243 |
| DdeI | CTNAG | 4 cut(s) | 37, 377, 443, 524 |
| DpnI | GATC | 1 cut(s) | 126 |
| DpnII | GATC | 1 cut(s) | 124 |
| DriI | GACNNNNNGTC | 1 cut(s) | 39 |
| Eam1104I | CTCTTC | 1 cut(s) | 607 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 39 |
| EarI | CTCTTC | 1 cut(s) | 607 |
| Eco130I | CCWWGG | 1 cut(s) | 291 |
| Eco24I | GRGCYC | 1 cut(s) | 282 |
| Eco31I | GGTCTC | 2 cut(s) | 441, 542 |
| Eco47I | GGWCC | 1 cut(s) | 142 |
| Eco57I | CTGAAG | 1 cut(s) | 363 |
| Eco81I | CCTNAGG | 1 cut(s) | 37 |
| Eco88I | CYCGRG | 1 cut(s) | 281 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 137 |
| EcoT14I | CCWWGG | 1 cut(s) | 291 |
| EcoT38I | GRGCYC | 1 cut(s) | 282 |
| ErhI | CCWWGG | 1 cut(s) | 291 |
| FaeI | CATG | 5 cut(s) | 112, 124, 295, 305, 488 |
| FatI | CATG | 5 cut(s) | 108, 120, 291, 301, 484 |
| Fnu4HI | GCNGC | 2 cut(s) | 211, 348 |
| FokI | GGATG | 1 cut(s) | 602 |
| FriOI | GRGCYC | 1 cut(s) | 282 |
| Fsp4HI | GCNGC | 2 cut(s) | 211, 348 |
| FspBI | CTAG | 6 cut(s) | 158, 351, 360, 438, 452, 545 |
| GluI | GCNGC | 2 cut(s) | 211, 348 |
| Hin1II | CATG | 5 cut(s) | 112, 124, 295, 305, 488 |
| HinfI | GANTC | 1 cut(s) | 21 |
| Hpy166II | GTNNAC | 1 cut(s) | 243 |
| Hpy188I | TCNGA | 4 cut(s) | 154, 253, 277, 446 |
| Hpy188III | TCNNGA | 3 cut(s) | 302, 326, 360 |
| Hpy8I | GTNNAC | 1 cut(s) | 243 |
| HpyAV | CCTTC | 2 cut(s) | 159, 385 |
| HpyCH4III | ACNGT | 1 cut(s) | 259 |
| HpyCH4V | TGCA | 3 cut(s) | 314, 418, 484 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 347, 415, 481 |
| HpyF3I | CTNAG | 4 cut(s) | 37, 377, 443, 524 |
| Hsp92II | CATG | 5 cut(s) | 112, 124, 295, 305, 488 |
| Kzo9I | GATC | 1 cut(s) | 124 |
| LmnI | GCTCC | 2 cut(s) | 277, 406 |
| LpnPI | CCDG | 6 cut(s) | 29, 74, 202, 372, 461, 536 |
| Lsp1109I | GCAGC | 2 cut(s) | 222, 359 |
| LweI | GCATC | 1 cut(s) | 42 |
| MaeI | CTAG | 6 cut(s) | 158, 351, 360, 438, 452, 545 |
| MaeIII | GTNAC | 1 cut(s) | 332 |
| MalI | GATC | 1 cut(s) | 126 |
| MboI | GATC | 1 cut(s) | 124 |
| MflI | RGATCY | 1 cut(s) | 124 |
| MhlI | GDGCHC | 2 cut(s) | 282, 411 |
| MluCI | AATT | 5 cut(s) | 95, 309, 423, 433, 603 |
| MlyI | GAGTC | 1 cut(s) | 15 |
| MnlI | CCTC | 9 cut(s) | 19, 133, 172, 298, 396, 572, 586, 589, 608 |
| MseI | TTAA | 4 cut(s) | 57, 432, 465, 606 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 347, 415, 481 |
| NcoI | CCATGG | 1 cut(s) | 291 |
| NdeII | GATC | 1 cut(s) | 124 |
| NlaIII | CATG | 5 cut(s) | 112, 124, 295, 305, 488 |
| NlaIV | GGNNCC | 2 cut(s) | 279, 560 |
| NmuCI | GTSAC | 1 cut(s) | 332 |
| NspI | RCATGY | 1 cut(s) | 488 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PkrI | GCNGC | 2 cut(s) | 212, 349 |
| PleI | GAGTC | 1 cut(s) | 15 |
| PpsI | GAGTC | 1 cut(s) | 15 |
| PshBI | ATTAAT | 1 cut(s) | 432 |
| PsiI | TTATAA | 1 cut(s) | 195 |
| PspN4I | GGNNCC | 2 cut(s) | 279, 560 |
| PspPI | GGNCC | 1 cut(s) | 142 |
| PsuI | RGATCY | 1 cut(s) | 124 |
| RsaI | GTAC | 2 cut(s) | 172, 244 |
| RsaNI | GTAC | 2 cut(s) | 171, 243 |
| SaqAI | TTAA | 4 cut(s) | 57, 432, 465, 606 |
| SatI | GCNGC | 2 cut(s) | 211, 348 |
| Sau3AI | GATC | 1 cut(s) | 124 |
| Sau96I | GGNCC | 1 cut(s) | 142 |
| SchI | GAGTC | 1 cut(s) | 15 |
| SduI | GDGCHC | 2 cut(s) | 282, 411 |
| SfaNI | GCATC | 1 cut(s) | 42 |
| SfcI | CTRYAG | 1 cut(s) | 514 |
| SinI | GGWCC | 1 cut(s) | 142 |
| SmlI | CTYRAG | 1 cut(s) | 137 |
| SmoI | CTYRAG | 1 cut(s) | 137 |
| Sse9I | AATT | 5 cut(s) | 95, 309, 423, 433, 603 |
| SspMI | CTAG | 6 cut(s) | 158, 351, 360, 438, 452, 545 |
| StyI | CCWWGG | 1 cut(s) | 291 |
| TaaI | ACNGT | 1 cut(s) | 259 |
| TaqI | TCGA | 2 cut(s) | 11, 325 |
| TasI | AATT | 5 cut(s) | 95, 309, 423, 433, 603 |
| TatI | WGTACW | 2 cut(s) | 170, 242 |
| Tru1I | TTAA | 4 cut(s) | 57, 432, 465, 606 |
| Tru9I | TTAA | 4 cut(s) | 57, 432, 465, 606 |
| TscAI | CASTG | 2 cut(s) | 264, 403 |
| TseFI | GTSAC | 1 cut(s) | 332 |
| TseI | GCWGC | 2 cut(s) | 210, 347 |
| Tsp45I | GTSAC | 1 cut(s) | 332 |
| TspDTI | ATGAA | 4 cut(s) | 29, 290, 485, 522 |
| TspRI | CASTG | 2 cut(s) | 264, 403 |
| VpaK11BI | GGWCC | 1 cut(s) | 142 |
| VspI | ATTAAT | 1 cut(s) | 432 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 137 |
| XapI | RAATTY | 1 cut(s) | 95 |
| XbaI | TCTAGA | 1 cut(s) | 359 |
| XceI | RCATGY | 1 cut(s) | 488 |
| XspI | CTAG | 6 cut(s) | 158, 351, 360, 438, 452, 545 |