gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 5 - 68 | 3.6e-07 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 20 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 281 |
| AclWI | GGATC | 1 cut(s) | 361 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 281 |
| AgsI | TTSAA | 1 cut(s) | 179 |
| AluBI | AGCT | 4 cut(s) | 16, 28, 144, 160 |
| AluI | AGCT | 4 cut(s) | 16, 28, 144, 160 |
| Alw26I | GTCTC | 1 cut(s) | 291 |
| AlwI | GGATC | 1 cut(s) | 361 |
| Ama87I | CYCGRG | 1 cut(s) | 198 |
| AoxI | GGCC | 1 cut(s) | 69 |
| ApeKI | GCWGC | 3 cut(s) | 247, 250, 271 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 192, 378 |
| AspS9I | GGNCC | 1 cut(s) | 70 |
| AsuHPI | GGTGA | 1 cut(s) | 73 |
| AvaI | CYCGRG | 1 cut(s) | 198 |
| BanI | GGYRCC | 1 cut(s) | 20 |
| BbsI | GAAGAC | 1 cut(s) | 185 |
| BbvI | GCAGC | 3 cut(s) | 259, 262, 283 |
| BccI | CCATC | 2 cut(s) | 58, 398 |
| BcoDI | GTCTC | 1 cut(s) | 291 |
| BfaI | CTAG | 3 cut(s) | 17, 38, 333 |
| BisI | GCNGC | 3 cut(s) | 248, 251, 272 |
| BlsI | GCNGC | 3 cut(s) | 249, 252, 273 |
| BmeT110I | CYCGRG | 1 cut(s) | 198 |
| BmgT120I | GGNCC | 1 cut(s) | 70 |
| BmiI | GGNNCC | 1 cut(s) | 22 |
| BmsI | GCATC | 1 cut(s) | 57 |
| BpiI | GAAGAC | 1 cut(s) | 185 |
| BpuEI | CTTGAG | 1 cut(s) | 273 |
| BsaI | GGTCTC | 1 cut(s) | 291 |
| BsaJI | CCNNGG | 1 cut(s) | 197 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 113, 143 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 281 |
| BseDI | CCNNGG | 1 cut(s) | 197 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 281 |
| BseRI | GAGGAG | 1 cut(s) | 197 |
| BseXI | GCAGC | 3 cut(s) | 259, 262, 283 |
| BshFI | GGCC | 1 cut(s) | 71 |
| BshNI | GGYRCC | 1 cut(s) | 20 |
| BsiHKCI | CYCGRG | 1 cut(s) | 198 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 281 |
| BsmAI | GTCTC | 1 cut(s) | 291 |
| BsnI | GGCC | 1 cut(s) | 71 |
| Bso31I | GGTCTC | 1 cut(s) | 291 |
| BsoBI | CYCGRG | 1 cut(s) | 198 |
| Bsp143I | GATC | 1 cut(s) | 353 |
| BspANI | GGCC | 1 cut(s) | 71 |
| BspLI | GGNNCC | 1 cut(s) | 22 |
| BspPI | GGATC | 1 cut(s) | 361 |
| BspT107I | GGYRCC | 1 cut(s) | 20 |
| BspTNI | GGTCTC | 1 cut(s) | 291 |
| BssECI | CCNNGG | 1 cut(s) | 197 |
| BssMI | GATC | 1 cut(s) | 353 |
| Bst4CI | ACNGT | 1 cut(s) | 115 |
| BstC8I | GCNNGC | 1 cut(s) | 447 |
| BstDEI | CTNAG | 1 cut(s) | 54 |
| BstKTI | GATC | 1 cut(s) | 356 |
| BstMAI | GTCTC | 1 cut(s) | 291 |
| BstMBI | GATC | 1 cut(s) | 353 |
| BstV1I | GCAGC | 3 cut(s) | 259, 262, 283 |
| BstV2I | GAAGAC | 1 cut(s) | 185 |
| BstX2I | RGATCY | 1 cut(s) | 353 |
| BstYI | RGATCY | 1 cut(s) | 353 |
| BsuRI | GGCC | 1 cut(s) | 71 |
| Cac8I | GCNNGC | 1 cut(s) | 447 |
| Cfr13I | GGNCC | 1 cut(s) | 70 |
| CviJI | RGCY | 7 cut(s) | 16, 28, 71, 144, 160, 274, 445 |
| CviKI_1 | RGCY | 7 cut(s) | 16, 28, 71, 144, 160, 274, 445 |
| DdeI | CTNAG | 1 cut(s) | 54 |
| DpnI | GATC | 1 cut(s) | 355 |
| DpnII | GATC | 1 cut(s) | 353 |
| DraI | TTTAAA | 1 cut(s) | 327 |
| Eco31I | GGTCTC | 1 cut(s) | 291 |
| Eco88I | CYCGRG | 1 cut(s) | 198 |
| FaiI | YATR | 3 cut(s) | 77, 277, 413 |
| Fnu4HI | GCNGC | 3 cut(s) | 248, 251, 272 |
| Fsp4HI | GCNGC | 3 cut(s) | 248, 251, 272 |
| FspBI | CTAG | 3 cut(s) | 17, 38, 333 |
| GluI | GCNGC | 3 cut(s) | 248, 251, 272 |
| HaeIII | GGCC | 1 cut(s) | 71 |
| HindIII | AAGCTT | 1 cut(s) | 26 |
| HphI | GGTGA | 1 cut(s) | 73 |
| Hpy188I | TCNGA | 1 cut(s) | 373 |
| Hpy188III | TCNNGA | 3 cut(s) | 38, 179, 200 |
| HpyAV | CCTTC | 3 cut(s) | 52, 199, 478 |
| HpyCH4III | ACNGT | 1 cut(s) | 115 |
| HpyCH4IV | ACGT | 1 cut(s) | 190 |
| HpyCH4V | TGCA | 4 cut(s) | 229, 301, 426, 449 |
| HpyF3I | CTNAG | 1 cut(s) | 54 |
| HpySE526I | ACGT | 1 cut(s) | 190 |
| Kzo9I | GATC | 1 cut(s) | 353 |
| LpnPI | CCDG | 2 cut(s) | 130, 165 |
| Lsp1109I | GCAGC | 3 cut(s) | 259, 262, 283 |
| LweI | GCATC | 1 cut(s) | 57 |
| MaeI | CTAG | 3 cut(s) | 17, 38, 333 |
| MaeII | ACGT | 1 cut(s) | 190 |
| MaeIII | GTNAC | 1 cut(s) | 459 |
| MalI | GATC | 1 cut(s) | 355 |
| MboI | GATC | 1 cut(s) | 353 |
| MboII | GAAGA | 3 cut(s) | 185, 330, 348 |
| MflI | RGATCY | 1 cut(s) | 353 |
| MluCI | AATT | 4 cut(s) | 31, 169, 220, 343 |
| MmeI | TCCRAC | 1 cut(s) | 384 |
| MnlI | CCTC | 5 cut(s) | 106, 175, 178, 207, 466 |
| MroXI | GAANNNNTTC | 2 cut(s) | 192, 378 |
| MseI | TTAA | 3 cut(s) | 30, 219, 326 |
| NdeII | GATC | 1 cut(s) | 353 |
| NlaIV | GGNNCC | 1 cut(s) | 22 |
| PdmI | GAANNNNTTC | 2 cut(s) | 192, 378 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 281 |
| PkrI | GCNGC | 3 cut(s) | 249, 252, 273 |
| PspN4I | GGNNCC | 1 cut(s) | 22 |
| PspPI | GGNCC | 1 cut(s) | 70 |
| PsuI | RGATCY | 1 cut(s) | 353 |
| SaqAI | TTAA | 3 cut(s) | 30, 219, 326 |
| SatI | GCNGC | 3 cut(s) | 248, 251, 272 |
| Sau3AI | GATC | 1 cut(s) | 353 |
| Sau96I | GGNCC | 1 cut(s) | 70 |
| SetI | ASST | 9 cut(s) | 18, 22, 30, 63, 146, 154, 162, 193, 379 |
| SfaNI | GCATC | 1 cut(s) | 57 |
| SmlI | CTYRAG | 1 cut(s) | 288 |
| SmoI | CTYRAG | 1 cut(s) | 288 |
| Sse9I | AATT | 4 cut(s) | 31, 169, 220, 343 |
| SspMI | CTAG | 3 cut(s) | 17, 38, 333 |
| TaaI | ACNGT | 1 cut(s) | 115 |
| TaiI | ACGT | 1 cut(s) | 193 |
| TasI | AATT | 4 cut(s) | 31, 169, 220, 343 |
| Tru1I | TTAA | 3 cut(s) | 30, 219, 326 |
| Tru9I | TTAA | 3 cut(s) | 30, 219, 326 |
| TseI | GCWGC | 3 cut(s) | 247, 250, 271 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 281 |
| XbaI | TCTAGA | 1 cut(s) | 37 |
| XmnI | GAANNNNTTC | 2 cut(s) | 192, 378 |
| XspI | CTAG | 3 cut(s) | 17, 38, 333 |