No description available
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 2 - 128 | 2.7e-09 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 412, 508 |
| AcsI | RAATTY | 1 cut(s) | 146 |
| AcuI | CTGAAG | 2 cut(s) | 144, 280 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 394 |
| AflIII | ACRYGT | 1 cut(s) | 562 |
| AjnI | CCWGG | 1 cut(s) | 580 |
| AluBI | AGCT | 5 cut(s) | 131, 211, 259, 352, 630 |
| AluI | AGCT | 5 cut(s) | 131, 211, 259, 352, 630 |
| Alw21I | GWGCWC | 2 cut(s) | 192, 632 |
| ApeKI | GCWGC | 1 cut(s) | 128 |
| ApoI | RAATTY | 1 cut(s) | 146 |
| AseI | ATTAAT | 1 cut(s) | 345 |
| AxyI | CCTNAGG | 1 cut(s) | 63 |
| BanII | GRGCYC | 1 cut(s) | 632 |
| Bbv12I | GWGCWC | 2 cut(s) | 192, 632 |
| BbvI | GCAGC | 1 cut(s) | 140 |
| BccI | CCATC | 4 cut(s) | 161, 232, 295, 550 |
| BciT130I | CCWGG | 1 cut(s) | 582 |
| BciVI | GTATCC | 1 cut(s) | 499 |
| BclI | TGATCA | 1 cut(s) | 15 |
| BfaI | CTAG | 2 cut(s) | 132, 326 |
| BfmI | CTRYAG | 3 cut(s) | 72, 411, 501 |
| BfuAI | ACCTGC | 2 cut(s) | 412, 508 |
| BfuI | GTATCC | 1 cut(s) | 499 |
| BglII | AGATCT | 1 cut(s) | 308 |
| BisI | GCNGC | 1 cut(s) | 129 |
| BlpI | GCTNAGC | 1 cut(s) | 465 |
| BlsI | GCNGC | 1 cut(s) | 130 |
| Bme1390I | CCNGG | 1 cut(s) | 582 |
| BmiI | GGNNCC | 2 cut(s) | 60, 137 |
| BmrFI | CCNGG | 1 cut(s) | 582 |
| BmsI | GCATC | 3 cut(s) | 58, 241, 259 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 614 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 465 |
| BsaJI | CCNNGG | 3 cut(s) | 388, 580, 633 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 394 |
| Bse21I | CCTNAGG | 1 cut(s) | 63 |
| BseBI | CCWGG | 1 cut(s) | 582 |
| BseDI | CCNNGG | 3 cut(s) | 388, 580, 633 |
| BseGI | GGATG | 4 cut(s) | 73, 243, 376, 603 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 394 |
| BseMII | CTCAG | 5 cut(s) | 24, 54, 87, 238, 296 |
| BseRI | GAGGAG | 2 cut(s) | 389, 638 |
| BseXI | GCAGC | 1 cut(s) | 140 |
| BsiHKAI | GWGCWC | 2 cut(s) | 192, 632 |
| BsiSI | CCGG | 1 cut(s) | 492 |
| BslFI | GGGAC | 1 cut(s) | 573 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 394 |
| BsmFI | GGGAC | 1 cut(s) | 573 |
| Bsp1286I | GDGCHC | 2 cut(s) | 192, 632 |
| Bsp143I | GATC | 2 cut(s) | 15, 308 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 465 |
| BspCNI | CTCAG | 5 cut(s) | 25, 55, 88, 237, 297 |
| BspLI | GGNNCC | 2 cut(s) | 60, 137 |
| BspMAI | CTGCAG | 2 cut(s) | 415, 505 |
| BspMI | ACCTGC | 2 cut(s) | 412, 508 |
| BssECI | CCNNGG | 3 cut(s) | 388, 580, 633 |
| BssMI | GATC | 2 cut(s) | 15, 308 |
| BssT1I | CCWWGG | 1 cut(s) | 633 |
| Bst2UI | CCWGG | 1 cut(s) | 582 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 196 |
| BstDEI | CTNAG | 9 cut(s) | 6, 33, 63, 96, 224, 305, 435, 465, 510 |
| BstDSI | CCRYGG | 1 cut(s) | 388 |
| BstF5I | GGATG | 4 cut(s) | 73, 243, 376, 603 |
| BstKTI | GATC | 2 cut(s) | 18, 311 |
| BstMBI | GATC | 2 cut(s) | 15, 308 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 92, 128, 196, 404 |
| BstNI | CCWGG | 1 cut(s) | 582 |
| BstSCI | CCNGG | 1 cut(s) | 580 |
| BstSFI | CTRYAG | 3 cut(s) | 72, 411, 501 |
| BstV1I | GCAGC | 1 cut(s) | 140 |
| BstX2I | RGATCY | 1 cut(s) | 308 |
| BstYI | RGATCY | 1 cut(s) | 308 |
| Bsu36I | CCTNAGG | 1 cut(s) | 63 |
| BsuI | GTATCC | 1 cut(s) | 499 |
| BtgI | CCRYGG | 1 cut(s) | 388 |
| BtsCI | GGATG | 4 cut(s) | 73, 243, 376, 603 |
| BtsIMutI | CAGTG | 1 cut(s) | 366 |
| BveI | ACCTGC | 2 cut(s) | 412, 508 |
| CviAII | CATG | 3 cut(s) | 152, 266, 594 |
| DdeI | CTNAG | 9 cut(s) | 6, 33, 63, 96, 224, 305, 435, 465, 510 |
| DpnI | GATC | 2 cut(s) | 17, 310 |
| DpnII | GATC | 2 cut(s) | 15, 308 |
| Ecl136II | GAGCTC | 1 cut(s) | 630 |
| Eco130I | CCWWGG | 1 cut(s) | 633 |
| Eco24I | GRGCYC | 1 cut(s) | 632 |
| Eco53kI | GAGCTC | 1 cut(s) | 630 |
| Eco57I | CTGAAG | 2 cut(s) | 144, 280 |
| Eco81I | CCTNAGG | 1 cut(s) | 63 |
| EcoICRI | GAGCTC | 1 cut(s) | 630 |
| EcoRI | GAATTC | 1 cut(s) | 146 |
| EcoRII | CCWGG | 1 cut(s) | 580 |
| EcoT14I | CCWWGG | 1 cut(s) | 633 |
| EcoT22I | ATGCAT | 1 cut(s) | 201 |
| EcoT38I | GRGCYC | 1 cut(s) | 632 |
| ErhI | CCWWGG | 1 cut(s) | 633 |
| FaeI | CATG | 3 cut(s) | 155, 269, 597 |
| FaqI | GGGAC | 1 cut(s) | 573 |
| FatI | CATG | 3 cut(s) | 151, 265, 593 |
| FbaI | TGATCA | 1 cut(s) | 15 |
| Fnu4HI | GCNGC | 1 cut(s) | 129 |
| FokI | GGATG | 4 cut(s) | 80, 250, 383, 610 |
| FriOI | GRGCYC | 1 cut(s) | 632 |
| Fsp4HI | GCNGC | 1 cut(s) | 129 |
| FspBI | CTAG | 2 cut(s) | 132, 326 |
| GluI | GCNGC | 1 cut(s) | 129 |
| HapII | CCGG | 1 cut(s) | 492 |
| Hin1II | CATG | 3 cut(s) | 155, 269, 597 |
| HinfI | GANTC | 1 cut(s) | 506 |
| HpaII | CCGG | 1 cut(s) | 492 |
| Hpy166II | GTNNAC | 1 cut(s) | 339 |
| Hpy188I | TCNGA | 2 cut(s) | 34, 227 |
| Hpy188III | TCNNGA | 2 cut(s) | 19, 326 |
| Hpy8I | GTNNAC | 1 cut(s) | 339 |
| HpyAV | CCTTC | 2 cut(s) | 304, 565 |
| HpyCH4IV | ACGT | 1 cut(s) | 564 |
| HpyCH4V | TGCA | 8 cut(s) | 199, 248, 254, 265, 272, 407, 413, 503 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 92, 128, 196, 404 |
| HpyF3I | CTNAG | 9 cut(s) | 6, 33, 63, 96, 224, 305, 435, 465, 510 |
| HpySE526I | ACGT | 1 cut(s) | 564 |
| Hsp92II | CATG | 3 cut(s) | 155, 269, 597 |
| Ksp22I | TGATCA | 1 cut(s) | 15 |
| Kzo9I | GATC | 2 cut(s) | 15, 308 |
| LmnI | GCTCC | 3 cut(s) | 141, 187, 635 |
| LpnPI | CCDG | 7 cut(s) | 4, 75, 417, 505, 513, 567, 594 |
| Lsp1109I | GCAGC | 1 cut(s) | 140 |
| LweI | GCATC | 3 cut(s) | 58, 241, 259 |
| MaeI | CTAG | 2 cut(s) | 132, 326 |
| MaeII | ACGT | 1 cut(s) | 564 |
| MaeIII | GTNAC | 1 cut(s) | 279 |
| MalI | GATC | 2 cut(s) | 17, 310 |
| MboI | GATC | 2 cut(s) | 15, 308 |
| MboII | GAAGA | 2 cut(s) | 460, 535 |
| MflI | RGATCY | 1 cut(s) | 308 |
| MhlI | GDGCHC | 2 cut(s) | 192, 632 |
| MluCI | AATT | 3 cut(s) | 146, 354, 478 |
| MnlI | CCTC | 9 cut(s) | 28, 49, 58, 100, 322, 367, 388, 535, 616 |
| Mph1103I | ATGCAT | 1 cut(s) | 201 |
| MseI | TTAA | 5 cut(s) | 233, 345, 483, 567, 588 |
| MspA1I | CMGCKG | 1 cut(s) | 211 |
| MspI | CCGG | 1 cut(s) | 492 |
| MspR9I | CCNGG | 1 cut(s) | 582 |
| MvaI | CCWGG | 1 cut(s) | 582 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 92, 128, 196, 404 |
| NdeII | GATC | 2 cut(s) | 15, 308 |
| NlaIII | CATG | 3 cut(s) | 155, 269, 597 |
| NlaIV | GGNNCC | 2 cut(s) | 60, 137 |
| NmuCI | GTSAC | 1 cut(s) | 279 |
| NsiI | ATGCAT | 1 cut(s) | 201 |
| PfeI | GAWTC | 1 cut(s) | 506 |
| PkrI | GCNGC | 1 cut(s) | 130 |
| PshBI | ATTAAT | 1 cut(s) | 345 |
| Psp124BI | GAGCTC | 1 cut(s) | 632 |
| Psp6I | CCWGG | 1 cut(s) | 580 |
| PspGI | CCWGG | 1 cut(s) | 580 |
| PspN4I | GGNNCC | 2 cut(s) | 60, 137 |
| PstI | CTGCAG | 2 cut(s) | 415, 505 |
| PsuI | RGATCY | 1 cut(s) | 308 |
| PvuII | CAGCTG | 1 cut(s) | 211 |
| SacI | GAGCTC | 1 cut(s) | 632 |
| SaqAI | TTAA | 5 cut(s) | 233, 345, 483, 567, 588 |
| SatI | GCNGC | 1 cut(s) | 129 |
| Sau3AI | GATC | 2 cut(s) | 15, 308 |
| ScrFI | CCNGG | 1 cut(s) | 582 |
| SduI | GDGCHC | 2 cut(s) | 192, 632 |
| SfaNI | GCATC | 3 cut(s) | 58, 241, 259 |
| SfcI | CTRYAG | 3 cut(s) | 72, 411, 501 |
| Sse9I | AATT | 3 cut(s) | 146, 354, 478 |
| SspI | AATATT | 1 cut(s) | 91 |
| SspMI | CTAG | 2 cut(s) | 132, 326 |
| SstI | GAGCTC | 1 cut(s) | 632 |
| StyD4I | CCNGG | 1 cut(s) | 580 |
| StyI | CCWWGG | 1 cut(s) | 633 |
| TaiI | ACGT | 1 cut(s) | 567 |
| TasI | AATT | 3 cut(s) | 146, 354, 478 |
| TfiI | GAWTC | 1 cut(s) | 506 |
| Tru1I | TTAA | 5 cut(s) | 233, 345, 483, 567, 588 |
| Tru9I | TTAA | 5 cut(s) | 233, 345, 483, 567, 588 |
| TscAI | CASTG | 1 cut(s) | 366 |
| TseFI | GTSAC | 1 cut(s) | 279 |
| TseI | GCWGC | 1 cut(s) | 128 |
| Tsp45I | GTSAC | 1 cut(s) | 279 |
| TspDTI | ATGAA | 1 cut(s) | 168 |
| TspGWI | ACGGA | 1 cut(s) | 377 |
| TspRI | CASTG | 1 cut(s) | 366 |
| VspI | ATTAAT | 1 cut(s) | 345 |
| XapI | RAATTY | 1 cut(s) | 146 |
| XbaI | TCTAGA | 1 cut(s) | 325 |
| XspI | CTAG | 2 cut(s) | 132, 326 |
| Zsp2I | ATGCAT | 1 cut(s) | 201 |