gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 7 - 107 | 9.5e-13 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 92 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 102 |
| AflII | CTTAAG | 1 cut(s) | 86 |
| AflIII | ACRYGT | 1 cut(s) | 27 |
| AgsI | TTSAA | 1 cut(s) | 356 |
| AleI | CACNNNNGTG | 2 cut(s) | 200, 341 |
| AluBI | AGCT | 6 cut(s) | 59, 130, 222, 232, 243, 280 |
| AluI | AGCT | 6 cut(s) | 59, 130, 222, 232, 243, 280 |
| Alw21I | GWGCWC | 1 cut(s) | 195 |
| Alw26I | GTCTC | 1 cut(s) | 164 |
| Alw44I | GTGCAC | 1 cut(s) | 191 |
| Ama87I | CYCGRG | 1 cut(s) | 233 |
| ApaLI | GTGCAC | 1 cut(s) | 191 |
| ApeKI | GCWGC | 1 cut(s) | 56 |
| AseI | ATTAAT | 1 cut(s) | 141 |
| AsuHPI | GGTGA | 2 cut(s) | 166, 334 |
| AvaI | CYCGRG | 1 cut(s) | 233 |
| BaeGI | GKGCMC | 1 cut(s) | 195 |
| BbsI | GAAGAC | 1 cut(s) | 312 |
| Bbv12I | GWGCWC | 1 cut(s) | 195 |
| BbvI | GCAGC | 1 cut(s) | 68 |
| BccI | CCATC | 1 cut(s) | 296 |
| BcoDI | GTCTC | 1 cut(s) | 164 |
| BfaI | CTAG | 2 cut(s) | 60, 240 |
| BfrI | CTTAAG | 1 cut(s) | 86 |
| BisI | GCNGC | 1 cut(s) | 57 |
| BlsI | GCNGC | 1 cut(s) | 58 |
| BmeT110I | CYCGRG | 1 cut(s) | 233 |
| BpiI | GAAGAC | 1 cut(s) | 312 |
| Bpu10I | CCTNAGC | 1 cut(s) | 51 |
| BsaBI | GATNNNNATC | 1 cut(s) | 287 |
| BsaI | GGTCTC | 1 cut(s) | 164 |
| BsaWI | WCCGGW | 1 cut(s) | 95 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 102 |
| Bse8I | GATNNNNATC | 1 cut(s) | 287 |
| BseJI | GATNNNNATC | 1 cut(s) | 287 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 102 |
| BseSI | GKGCMC | 1 cut(s) | 195 |
| BseXI | GCAGC | 1 cut(s) | 68 |
| BsiHKAI | GWGCWC | 1 cut(s) | 195 |
| BsiHKCI | CYCGRG | 1 cut(s) | 233 |
| BsiSI | CCGG | 1 cut(s) | 96 |
| BslFI | GGGAC | 1 cut(s) | 250 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 102 |
| BsmAI | GTCTC | 1 cut(s) | 164 |
| BsmFI | GGGAC | 1 cut(s) | 250 |
| BsmI | GAATGC | 1 cut(s) | 205 |
| Bso31I | GGTCTC | 1 cut(s) | 164 |
| BsoBI | CYCGRG | 1 cut(s) | 233 |
| Bsp1286I | GDGCHC | 1 cut(s) | 195 |
| BspHI | TCATGA | 2 cut(s) | 22, 123 |
| BspTI | CTTAAG | 1 cut(s) | 86 |
| BspTNI | GGTCTC | 1 cut(s) | 164 |
| Bst4CI | ACNGT | 2 cut(s) | 199, 382 |
| BstAFI | CTTAAG | 1 cut(s) | 86 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 211 |
| BstC8I | GCNNGC | 2 cut(s) | 66, 230 |
| BstDEI | CTNAG | 2 cut(s) | 51, 363 |
| BstEII | GGTNACC | 1 cut(s) | 172 |
| BstMAI | GTCTC | 1 cut(s) | 164 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 56, 65, 211 |
| BstNSI | RCATGY | 1 cut(s) | 31 |
| BstPI | GGTNACC | 1 cut(s) | 172 |
| BstSLI | GKGCMC | 1 cut(s) | 195 |
| BstV1I | GCAGC | 1 cut(s) | 68 |
| BstV2I | GAAGAC | 1 cut(s) | 312 |
| Cac8I | GCNNGC | 2 cut(s) | 66, 230 |
| CciI | TCATGA | 2 cut(s) | 22, 123 |
| Csp6I | GTAC | 1 cut(s) | 91 |
| CviAII | CATG | 3 cut(s) | 23, 28, 124 |
| CviQI | GTAC | 1 cut(s) | 91 |
| DdeI | CTNAG | 2 cut(s) | 51, 363 |
| Eco31I | GGTCTC | 1 cut(s) | 164 |
| Eco88I | CYCGRG | 1 cut(s) | 233 |
| Eco91I | GGTNACC | 1 cut(s) | 172 |
| EcoO65I | GGTNACC | 1 cut(s) | 172 |
| FaeI | CATG | 3 cut(s) | 26, 31, 127 |
| FaiI | YATR | 8 cut(s) | 15, 24, 29, 33, 120, 125, 167, 186 |
| FaqI | GGGAC | 1 cut(s) | 250 |
| FatI | CATG | 3 cut(s) | 22, 27, 123 |
| Fnu4HI | GCNGC | 1 cut(s) | 57 |
| Fsp4HI | GCNGC | 1 cut(s) | 57 |
| FspBI | CTAG | 2 cut(s) | 60, 240 |
| GluI | GCNGC | 1 cut(s) | 57 |
| HapII | CCGG | 1 cut(s) | 96 |
| Hin1II | CATG | 3 cut(s) | 26, 31, 127 |
| HindIII | AAGCTT | 1 cut(s) | 128 |
| HinfI | GANTC | 1 cut(s) | 268 |
| HpaII | CCGG | 1 cut(s) | 96 |
| HphI | GGTGA | 2 cut(s) | 166, 334 |
| Hpy166II | GTNNAC | 3 cut(s) | 93, 193, 346 |
| Hpy188I | TCNGA | 1 cut(s) | 255 |
| Hpy188III | TCNNGA | 3 cut(s) | 23, 124, 235 |
| Hpy8I | GTNNAC | 3 cut(s) | 93, 193, 346 |
| HpyAV | CCTTC | 2 cut(s) | 250, 313 |
| HpyCH4III | ACNGT | 2 cut(s) | 199, 382 |
| HpyCH4V | TGCA | 3 cut(s) | 68, 193, 205 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 56, 65, 211 |
| HpyF3I | CTNAG | 2 cut(s) | 51, 363 |
| Hsp92II | CATG | 3 cut(s) | 26, 31, 127 |
| LpnPI | CCDG | 3 cut(s) | 87, 109, 242 |
| Lsp1109I | GCAGC | 1 cut(s) | 68 |
| MaeI | CTAG | 2 cut(s) | 60, 240 |
| MaeIII | GTNAC | 2 cut(s) | 41, 172 |
| MboII | GAAGA | 2 cut(s) | 317, 379 |
| MhlI | GDGCHC | 1 cut(s) | 195 |
| MlyI | GAGTC | 1 cut(s) | 277 |
| MnlI | CCTC | 3 cut(s) | 162, 295, 349 |
| MseI | TTAA | 5 cut(s) | 78, 87, 141, 152, 273 |
| MslI | CAYNNNNRTG | 2 cut(s) | 200, 341 |
| MspCI | CTTAAG | 1 cut(s) | 86 |
| MspI | CCGG | 1 cut(s) | 96 |
| Mva1269I | GAATGC | 1 cut(s) | 205 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 56, 65, 211 |
| NlaIII | CATG | 3 cut(s) | 26, 31, 127 |
| NmuCI | GTSAC | 2 cut(s) | 41, 172 |
| NspI | RCATGY | 1 cut(s) | 31 |
| OliI | CACNNNNGTG | 2 cut(s) | 200, 341 |
| PagI | TCATGA | 2 cut(s) | 22, 123 |
| PciI | ACATGT | 1 cut(s) | 27 |
| PctI | GAATGC | 1 cut(s) | 205 |
| PkrI | GCNGC | 1 cut(s) | 58 |
| PleI | GAGTC | 1 cut(s) | 276 |
| PpsI | GAGTC | 1 cut(s) | 276 |
| PscI | ACATGT | 1 cut(s) | 27 |
| PshBI | ATTAAT | 1 cut(s) | 141 |
| PspEI | GGTNACC | 1 cut(s) | 172 |
| RsaI | GTAC | 1 cut(s) | 92 |
| RsaNI | GTAC | 1 cut(s) | 91 |
| RseI | CAYNNNNRTG | 2 cut(s) | 200, 341 |
| SaqAI | TTAA | 5 cut(s) | 78, 87, 141, 152, 273 |
| SatI | GCNGC | 1 cut(s) | 57 |
| SchI | GAGTC | 1 cut(s) | 277 |
| SduI | GDGCHC | 1 cut(s) | 195 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 200, 341 |
| SmlI | CTYRAG | 1 cut(s) | 86 |
| SmoI | CTYRAG | 1 cut(s) | 86 |
| SspMI | CTAG | 2 cut(s) | 60, 240 |
| TaaI | ACNGT | 2 cut(s) | 199, 382 |
| TatI | WGTACW | 1 cut(s) | 90 |
| Tru1I | TTAA | 5 cut(s) | 78, 87, 141, 152, 273 |
| Tru9I | TTAA | 5 cut(s) | 78, 87, 141, 152, 273 |
| TseFI | GTSAC | 2 cut(s) | 41, 172 |
| TseI | GCWGC | 1 cut(s) | 56 |
| Tsp45I | GTSAC | 2 cut(s) | 41, 172 |
| TspDTI | ATGAA | 2 cut(s) | 11, 140 |
| Vha464I | CTTAAG | 1 cut(s) | 86 |
| VneI | GTGCAC | 1 cut(s) | 191 |
| VspI | ATTAAT | 1 cut(s) | 141 |
| XceI | RCATGY | 1 cut(s) | 31 |
| XspI | CTAG | 2 cut(s) | 60, 240 |