gag-polypeptide of LTR copia-type
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Retrotran_gag_2 | PF14223 | 52 - 197 | 9.7e-20 | gag-polypeptide of LTR copia-type |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 50, 680 |
| AccIII | TCCGGA | 1 cut(s) | 8 |
| AciI | CCGC | 2 cut(s) | 177, 686 |
| AclWI | GGATC | 1 cut(s) | 225 |
| AcsI | RAATTY | 2 cut(s) | 58, 443 |
| AcuI | CTGAAG | 1 cut(s) | 351 |
| AfaI | GTAC | 3 cut(s) | 249, 398, 645 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 50, 680, 692 |
| AgsI | TTSAA | 2 cut(s) | 41, 578 |
| AluBI | AGCT | 2 cut(s) | 329, 559 |
| AluI | AGCT | 2 cut(s) | 329, 559 |
| AlwI | GGATC | 1 cut(s) | 225 |
| Aor13HI | TCCGGA | 1 cut(s) | 8 |
| AoxI | GGCC | 1 cut(s) | 683 |
| ApeKI | GCWGC | 1 cut(s) | 670 |
| ApoI | RAATTY | 2 cut(s) | 58, 443 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 770 |
| AspS9I | GGNCC | 2 cut(s) | 683, 745 |
| AsuHPI | GGTGA | 1 cut(s) | 475 |
| AsuII | TTCGAA | 2 cut(s) | 56, 566 |
| AsuNHI | GCTAGC | 1 cut(s) | 100 |
| AvaII | GGWCC | 1 cut(s) | 745 |
| BbvI | GCAGC | 1 cut(s) | 682 |
| BccI | CCATC | 8 cut(s) | 232, 305, 368, 374, 460, 505, 718, 790 |
| BceAI | ACGGC | 1 cut(s) | 230 |
| BciVI | GTATCC | 1 cut(s) | 529 |
| BclI | TGATCA | 1 cut(s) | 271 |
| BfaI | CTAG | 5 cut(s) | 21, 95, 101, 725, 740 |
| BfuI | GTATCC | 1 cut(s) | 529 |
| BisI | GCNGC | 3 cut(s) | 177, 671, 686 |
| BlsI | GCNGC | 3 cut(s) | 178, 672, 687 |
| Bme18I | GGWCC | 1 cut(s) | 745 |
| BmgT120I | GGNCC | 2 cut(s) | 683, 745 |
| BmsI | GCATC | 1 cut(s) | 14 |
| BmtI | GCTAGC | 1 cut(s) | 104 |
| Bpu14I | TTCGAA | 2 cut(s) | 56, 566 |
| BsaAI | YACGTR | 1 cut(s) | 251 |
| BsaBI | GATNNNNATC | 1 cut(s) | 270 |
| BsaWI | WCCGGW | 2 cut(s) | 8, 136 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 50, 680, 692 |
| Bse3DI | GCAATG | 1 cut(s) | 31 |
| Bse8I | GATNNNNATC | 1 cut(s) | 270 |
| BseAI | TCCGGA | 1 cut(s) | 8 |
| BseGI | GGATG | 3 cut(s) | 5, 385, 801 |
| BseJI | GATNNNNATC | 1 cut(s) | 270 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 50, 680, 692 |
| BseMI | GCAATG | 1 cut(s) | 31 |
| BseMII | CTCAG | 1 cut(s) | 312 |
| BseRI | GAGGAG | 1 cut(s) | 596 |
| BseXI | GCAGC | 1 cut(s) | 682 |
| BshFI | GGCC | 1 cut(s) | 685 |
| BsiSI | CCGG | 2 cut(s) | 9, 137 |
| BsiWI | CGTACG | 1 cut(s) | 247 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 50, 680, 692 |
| BsnI | GGCC | 1 cut(s) | 685 |
| Bsp119I | TTCGAA | 2 cut(s) | 56, 566 |
| Bsp13I | TCCGGA | 1 cut(s) | 8 |
| Bsp143I | GATC | 2 cut(s) | 230, 271 |
| BspACI | CCGC | 2 cut(s) | 177, 686 |
| BspANI | GGCC | 1 cut(s) | 685 |
| BspCNI | CTCAG | 1 cut(s) | 313 |
| BspEI | TCCGGA | 1 cut(s) | 8 |
| BspHI | TCATGA | 1 cut(s) | 402 |
| BspOI | GCTAGC | 1 cut(s) | 104 |
| BspPI | GGATC | 1 cut(s) | 225 |
| BspT104I | TTCGAA | 2 cut(s) | 56, 566 |
| BsrDI | GCAATG | 1 cut(s) | 31 |
| BssMI | GATC | 2 cut(s) | 230, 271 |
| Bst4CI | ACNGT | 3 cut(s) | 206, 369, 517 |
| BstBAI | YACGTR | 1 cut(s) | 251 |
| BstBI | TTCGAA | 2 cut(s) | 56, 566 |
| BstC8I | GCNNGC | 3 cut(s) | 102, 146, 150 |
| BstDEI | CTNAG | 4 cut(s) | 122, 321, 351, 412 |
| BstF5I | GGATG | 3 cut(s) | 5, 385, 801 |
| BstKTI | GATC | 2 cut(s) | 233, 274 |
| BstMBI | GATC | 2 cut(s) | 230, 271 |
| BstNSI | RCATGY | 1 cut(s) | 152 |
| BstV1I | GCAGC | 1 cut(s) | 682 |
| BstX2I | RGATCY | 1 cut(s) | 230 |
| BstYI | RGATCY | 1 cut(s) | 230 |
| BsuI | GTATCC | 1 cut(s) | 529 |
| BsuRI | GGCC | 1 cut(s) | 685 |
| BtsCI | GGATG | 3 cut(s) | 5, 385, 801 |
| Cac8I | GCNNGC | 3 cut(s) | 102, 146, 150 |
| CciI | TCATGA | 1 cut(s) | 402 |
| Cfr13I | GGNCC | 2 cut(s) | 683, 745 |
| Csp6I | GTAC | 3 cut(s) | 248, 397, 644 |
| CviAII | CATG | 5 cut(s) | 149, 156, 235, 275, 403 |
| CviJI | RGCY | 8 cut(s) | 100, 176, 245, 329, 473, 559, 673, 685 |
| CviKI_1 | RGCY | 8 cut(s) | 100, 176, 245, 329, 473, 559, 673, 685 |
| CviQI | GTAC | 3 cut(s) | 248, 397, 644 |
| DdeI | CTNAG | 4 cut(s) | 122, 321, 351, 412 |
| DpnI | GATC | 2 cut(s) | 232, 273 |
| DpnII | GATC | 2 cut(s) | 230, 271 |
| Eco47I | GGWCC | 1 cut(s) | 745 |
| Eco57I | CTGAAG | 1 cut(s) | 351 |
| EcoO109I | RGGNCCY | 1 cut(s) | 745 |
| FaeI | CATG | 5 cut(s) | 152, 159, 238, 278, 406 |
| FatI | CATG | 5 cut(s) | 148, 155, 234, 274, 402 |
| FauNDI | CATATG | 2 cut(s) | 181, 803 |
| FbaI | TGATCA | 1 cut(s) | 271 |
| Fnu4HI | GCNGC | 3 cut(s) | 177, 671, 686 |
| FokI | GGATG | 1 cut(s) | 392 |
| Fsp4HI | GCNGC | 3 cut(s) | 177, 671, 686 |
| FspBI | CTAG | 5 cut(s) | 21, 95, 101, 725, 740 |
| GluI | GCNGC | 3 cut(s) | 177, 671, 686 |
| HaeIII | GGCC | 1 cut(s) | 685 |
| HapII | CCGG | 2 cut(s) | 9, 137 |
| Hin1II | CATG | 5 cut(s) | 152, 159, 238, 278, 406 |
| HinfI | GANTC | 2 cut(s) | 127, 317 |
| HpaII | CCGG | 2 cut(s) | 9, 137 |
| HphI | GGTGA | 1 cut(s) | 475 |
| Hpy188I | TCNGA | 1 cut(s) | 322 |
| Hpy188III | TCNNGA | 4 cut(s) | 9, 403, 578, 740 |
| HpyAV | CCTTC | 3 cut(s) | 67, 326, 758 |
| HpyCH4III | ACNGT | 3 cut(s) | 206, 369, 517 |
| HpyCH4IV | ACGT | 2 cut(s) | 250, 589 |
| HpyCH4V | TGCA | 2 cut(s) | 628, 700 |
| HpyF3I | CTNAG | 4 cut(s) | 122, 321, 351, 412 |
| HpySE526I | ACGT | 2 cut(s) | 250, 589 |
| Hsp92II | CATG | 5 cut(s) | 152, 159, 238, 278, 406 |
| Kpn2I | TCCGGA | 1 cut(s) | 8 |
| Ksp22I | TGATCA | 1 cut(s) | 271 |
| Kzo9I | GATC | 2 cut(s) | 230, 271 |
| LpnPI | CCDG | 4 cut(s) | 22, 150, 564, 769 |
| Lsp1109I | GCAGC | 1 cut(s) | 682 |
| LweI | GCATC | 1 cut(s) | 14 |
| MaeI | CTAG | 5 cut(s) | 21, 95, 101, 725, 740 |
| MaeII | ACGT | 2 cut(s) | 250, 589 |
| MalI | GATC | 2 cut(s) | 232, 273 |
| MboI | GATC | 2 cut(s) | 230, 271 |
| MboII | GAAGA | 1 cut(s) | 722 |
| MflI | RGATCY | 1 cut(s) | 230 |
| MluCI | AATT | 8 cut(s) | 58, 358, 416, 433, 443, 568, 619, 735 |
| MlyI | GAGTC | 2 cut(s) | 121, 326 |
| MmeI | TCCRAC | 2 cut(s) | 524, 776 |
| MnlI | CCTC | 8 cut(s) | 70, 189, 256, 304, 574, 577, 660, 736 |
| MroI | TCCGGA | 1 cut(s) | 8 |
| MroXI | GAANNNNTTC | 1 cut(s) | 770 |
| MseI | TTAA | 5 cut(s) | 47, 63, 357, 432, 618 |
| MspI | CCGG | 2 cut(s) | 9, 137 |
| NdeI | CATATG | 2 cut(s) | 181, 803 |
| NdeII | GATC | 2 cut(s) | 230, 271 |
| NheI | GCTAGC | 1 cut(s) | 100 |
| NlaIII | CATG | 5 cut(s) | 152, 159, 238, 278, 406 |
| NspI | RCATGY | 1 cut(s) | 152 |
| NspV | TTCGAA | 2 cut(s) | 56, 566 |
| PaeI | GCATGC | 1 cut(s) | 152 |
| PagI | TCATGA | 1 cut(s) | 402 |
| PdmI | GAANNNNTTC | 1 cut(s) | 770 |
| Pfl23II | CGTACG | 1 cut(s) | 247 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 50, 680 |
| PkrI | GCNGC | 3 cut(s) | 178, 672, 687 |
| PleI | GAGTC | 2 cut(s) | 121, 325 |
| PpsI | GAGTC | 2 cut(s) | 121, 325 |
| Ppu21I | YACGTR | 1 cut(s) | 251 |
| PpuMI | RGGWCCY | 1 cut(s) | 745 |
| Psp5II | RGGWCCY | 1 cut(s) | 745 |
| PspLI | CGTACG | 1 cut(s) | 247 |
| PspPI | GGNCC | 2 cut(s) | 683, 745 |
| PspPPI | RGGWCCY | 1 cut(s) | 745 |
| PsuI | RGATCY | 1 cut(s) | 230 |
| RsaI | GTAC | 3 cut(s) | 249, 398, 645 |
| RsaNI | GTAC | 3 cut(s) | 248, 397, 644 |
| SaqAI | TTAA | 5 cut(s) | 47, 63, 357, 432, 618 |
| SatI | GCNGC | 3 cut(s) | 177, 671, 686 |
| Sau3AI | GATC | 2 cut(s) | 230, 271 |
| Sau96I | GGNCC | 2 cut(s) | 683, 745 |
| SchI | GAGTC | 2 cut(s) | 121, 326 |
| SfaNI | GCATC | 1 cut(s) | 14 |
| SfuI | TTCGAA | 2 cut(s) | 56, 566 |
| SinI | GGWCC | 1 cut(s) | 745 |
| SphI | GCATGC | 1 cut(s) | 152 |
| Sse9I | AATT | 8 cut(s) | 58, 358, 416, 433, 443, 568, 619, 735 |
| SsiI | CCGC | 2 cut(s) | 177, 686 |
| SspI | AATATT | 1 cut(s) | 388 |
| SspMI | CTAG | 5 cut(s) | 21, 95, 101, 725, 740 |
| TaaI | ACNGT | 3 cut(s) | 206, 369, 517 |
| TaiI | ACGT | 2 cut(s) | 253, 592 |
| TaqI | TCGA | 2 cut(s) | 56, 566 |
| TasI | AATT | 8 cut(s) | 58, 358, 416, 433, 443, 568, 619, 735 |
| TatI | WGTACW | 2 cut(s) | 396, 643 |
| TauI | GCSGC | 2 cut(s) | 179, 688 |
| Tru1I | TTAA | 5 cut(s) | 47, 63, 357, 432, 618 |
| Tru9I | TTAA | 5 cut(s) | 47, 63, 357, 432, 618 |
| TseI | GCWGC | 1 cut(s) | 670 |
| TspDTI | ATGAA | 2 cut(s) | 239, 351 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 50, 680 |
| VpaK11BI | GGWCC | 1 cut(s) | 745 |
| XapI | RAATTY | 2 cut(s) | 58, 443 |
| XbaI | TCTAGA | 1 cut(s) | 739 |
| XceI | RCATGY | 1 cut(s) | 152 |
| XmnI | GAANNNNTTC | 1 cut(s) | 770 |
| XspI | CTAG | 5 cut(s) | 21, 95, 101, 725, 740 |